Wall clock time and date at job start Tue Mar 31 2020 07:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46731 * 2 1 4 4 C 1.50697 * 109.47013 * 119.99947 * 2 1 3 5 5 C 1.34515 * 125.79159 * 259.99739 * 4 2 1 6 6 C 1.41385 * 106.84000 * 180.02562 * 5 4 2 7 7 C 1.34507 * 106.84104 * 0.02562 * 6 5 4 8 8 O 1.34300 * 108.42410 * 359.97438 * 7 6 5 9 9 N 1.46495 * 109.46976 * 240.00244 * 2 1 3 10 10 C 1.46494 * 120.00121 * 299.99938 * 9 2 1 11 11 C 1.34786 * 119.99726 * 120.00228 * 9 2 1 12 12 O 1.21578 * 120.00185 * 359.97438 * 11 9 2 13 13 N 1.34773 * 119.99489 * 179.97438 * 11 9 2 14 14 C 1.46506 * 119.99733 * 179.97438 * 13 11 9 15 15 C 1.53005 * 109.46853 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47001 * 299.99902 * 15 14 13 17 17 C 1.52999 * 109.47236 * 60.00261 * 15 14 13 18 18 C 1.50705 * 109.46428 * 180.02562 * 15 14 13 19 19 H 1.07992 * 120.00080 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99266 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00345 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99816 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46802 * 60.00198 * 22 20 18 24 24 H 1.48500 * 109.47435 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47330 * 300.00737 * 22 20 18 26 26 H 1.09007 * 109.47114 * 300.00230 * 1 2 3 27 27 H 1.09005 * 109.47347 * 59.99581 * 1 2 3 28 28 H 1.08993 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.08001 * 126.57671 * 0.29417 * 5 4 2 30 30 H 1.08003 * 126.57418 * 180.02562 * 6 5 4 31 31 H 1.08001 * 125.78847 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.47658 * 90.00128 * 10 9 2 33 33 H 1.09002 * 109.47226 * 210.00086 * 10 9 2 34 34 H 1.09007 * 109.47140 * 329.99788 * 10 9 2 35 35 H 0.97005 * 120.00438 * 0.02562 * 13 11 9 36 36 H 1.08995 * 109.46798 * 300.00044 * 14 13 11 37 37 H 1.09001 * 109.46806 * 60.00549 * 14 13 11 38 38 H 1.08997 * 109.47194 * 60.00438 * 16 15 14 39 39 H 1.09004 * 109.46738 * 180.02562 * 16 15 14 40 40 H 1.08998 * 109.47287 * 300.00065 * 16 15 14 41 41 H 1.09003 * 109.46778 * 59.99766 * 17 15 14 42 42 H 1.08995 * 109.46852 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.47093 * 299.99644 * 17 15 14 44 44 H 0.97005 * 119.99716 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.4732 -0.1191 2.3553 6 6 2.8443 -1.1543 3.2439 7 6 2.6085 -2.3163 2.6086 8 8 2.1165 -2.0413 1.3896 9 7 2.0183 -0.6905 -1.1962 10 6 1.6644 -2.0930 -1.4281 11 6 2.7932 -0.0354 -2.0833 12 8 3.0866 1.1287 -1.8911 13 7 3.2428 -0.6709 -3.1835 14 6 4.0847 0.0413 -4.1481 15 6 4.4543 -0.9009 -5.2956 16 6 5.2198 -2.1040 -4.7412 17 6 3.1793 -1.3835 -5.9901 18 6 5.3208 -0.1684 -6.2875 19 1 5.5820 0.8654 -6.1163 20 6 5.7809 -0.8185 -7.4130 21 7 5.4632 -2.0776 -7.6211 22 14 6.8543 0.0895 -8.6429 23 1 8.0915 0.5585 -7.9686 24 1 7.2133 -0.8249 -9.7566 25 1 6.1112 1.2569 -9.1814 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.5286 0.9427 2.5451 30 1 3.2409 -1.0350 4.2413 31 1 2.7841 -3.3030 3.0110 32 1 0.7375 -2.1443 -1.9994 33 1 2.4628 -2.5817 -1.9865 34 1 1.5295 -2.5968 -0.4708 35 1 3.0084 -1.5996 -3.3371 36 1 3.5391 0.8981 -4.5433 37 1 4.9928 0.3854 -3.6532 38 1 4.5935 -2.6339 -4.0235 39 1 5.4836 -2.7750 -5.5588 40 1 6.1281 -1.7602 -4.2464 41 1 2.6340 -0.5263 -6.3851 42 1 3.4428 -2.0543 -6.8078 43 1 2.5530 -1.9134 -5.2725 44 1 5.7872 -2.5351 -8.4128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459258310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:35 Heat of formation + Delta-G solvation = -10.461754 kcal Electronic energy + Delta-G solvation = -24397.330168 eV Core-core repulsion = 20930.983163 eV Total energy + Delta-G solvation = -3466.347006 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.70530 -39.88763 -36.82465 -35.72381 -33.62380 -33.10249 -31.82368 -30.43827 -28.63143 -26.86234 -25.70732 -25.60804 -24.90598 -23.20198 -21.88423 -20.70050 -19.55491 -18.84854 -17.87577 -17.43841 -16.26777 -16.01672 -15.73575 -15.41398 -14.76821 -14.52476 -14.02818 -13.66542 -13.56065 -13.27573 -13.07974 -12.84878 -12.79698 -12.54602 -12.50369 -12.26589 -12.08049 -11.84480 -11.50289 -11.36382 -11.17286 -10.83188 -10.71117 -10.36461 -10.18744 -10.02331 -9.74455 -9.61188 -9.29033 -8.78180 -8.75548 -8.58859 -8.39169 -8.16817 -6.00306 -4.10253 1.60151 2.47841 2.79105 2.99581 3.31716 3.35746 3.39821 3.59564 4.32773 4.42453 4.52949 4.87143 4.90148 5.02029 5.14132 5.19416 5.26402 5.43992 5.49872 5.60188 5.69472 5.73397 5.82407 5.91807 6.10285 6.20667 6.35101 6.38593 6.51368 6.54096 6.80604 6.84382 6.91631 7.04406 7.05086 7.10725 7.24321 7.40077 7.57700 7.71359 8.02893 8.13870 8.37238 8.42753 8.89009 9.00215 9.55358 11.01119 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.003268 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.182095 B = 8566.246318 C = 8649.165396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.237 3.763 3 H 0.129 0.871 4 C -0.013 4.013 5 C -0.205 4.205 6 C -0.213 4.213 7 C -0.048 4.048 8 O -0.169 6.169 9 N -0.633 5.633 10 C 0.076 3.924 11 C 0.701 3.299 12 O -0.597 6.597 13 N -0.729 5.729 14 C 0.149 3.851 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.200 0.800 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.395 0.605 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.004 0.996 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.085 0.915 43 H 0.005 0.995 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 -2.698 17.592 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.132 3.868 3 H 0.147 0.853 4 C -0.065 4.065 5 C -0.225 4.225 6 C -0.232 4.232 7 C -0.116 4.116 8 O -0.065 6.065 9 N -0.371 5.371 10 C -0.067 4.067 11 C 0.403 3.597 12 O -0.477 6.477 13 N -0.385 5.385 14 C 0.026 3.974 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.217 0.783 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.232 0.768 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.024 0.976 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.453 -2.205 17.300 19.837 hybrid contribution 0.644 -0.050 -0.410 0.765 sum -8.810 -2.256 16.889 19.182 Atomic orbital electron populations 1.22183 0.93508 1.02949 1.03076 1.19439 0.93945 0.96076 0.77335 0.85331 1.22996 1.04480 0.80673 0.98317 1.21590 1.06059 1.00729 0.94077 1.21803 1.07349 0.92269 1.01783 1.24065 1.03184 1.00371 0.83940 1.84057 1.64985 1.24650 1.32837 1.47046 1.54488 1.12511 1.23016 1.21817 1.00606 0.81674 1.02639 1.15992 0.78652 0.84764 0.80314 1.90861 1.63485 1.15596 1.77710 1.45650 1.54520 1.15793 1.22504 1.21617 0.91966 0.95317 0.88540 1.18361 0.93491 0.92081 0.90520 1.21818 0.97760 0.99754 0.99368 1.21814 0.96056 1.00142 1.00681 1.20951 1.30499 0.97708 1.05274 0.92434 1.24875 0.96051 0.94876 0.97682 1.69797 1.45303 1.09762 1.27657 0.86627 0.80946 0.79562 0.80682 1.20276 1.21359 1.20274 0.91061 0.90978 0.91945 0.83409 0.83583 0.78316 0.92672 0.91305 0.90083 0.76841 0.92865 0.92930 0.97702 0.89614 0.95452 0.95425 0.89627 0.97640 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.18 37.16 0.34 -1.21 16 2 C 0.24 3.01 3.11 -69.09 -0.21 2.79 16 3 H 0.13 1.81 6.89 -51.93 -0.36 1.45 16 4 C -0.01 -0.16 6.06 -35.63 -0.22 -0.38 16 5 C -0.20 -2.35 10.80 -39.70 -0.43 -2.78 16 6 C -0.21 -2.14 10.91 -39.70 -0.43 -2.58 16 7 C -0.05 -0.46 12.09 29.41 0.36 -0.11 16 8 O -0.17 -2.00 8.03 5.71 0.05 -1.95 16 9 N -0.63 -9.21 2.75 -181.01 -0.50 -9.71 16 10 C 0.08 0.89 9.17 59.84 0.55 1.44 16 11 C 0.70 13.10 8.28 -86.91 -0.72 12.38 16 12 O -0.60 -13.12 15.67 5.30 0.08 -13.04 16 13 N -0.73 -13.73 4.82 -65.22 -0.31 -14.04 16 14 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 15 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 17 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 18 C -0.51 -13.37 8.01 -34.44 -0.28 -13.64 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.70 9.35 55.43 0.52 -23.18 16 22 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 29 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 34 H 0.08 0.87 5.41 -51.93 -0.28 0.59 16 35 H 0.39 6.77 3.89 -40.82 -0.16 6.61 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 39 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 43 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -30.19 348.71 -7.20 -37.39 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.64 Total: 6.70 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.63 Total: -3.24 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.29 Total: -46.93 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.13 Total: -14.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.19 -7.20 -37.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459258310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.927 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds