Wall clock time and date at job start Tue Mar 31 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32994 * 1 3 3 C 1.47099 * 120.00143 * 2 1 4 4 O 1.21617 * 120.00074 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00164 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00215 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47123 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.46931 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47337 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47119 * 120.00221 * 19 17 15 22 22 H 1.48507 * 109.47266 * 240.00028 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.07998 * 119.99697 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00200 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99697 * 180.02562 * 2 1 3 28 28 H 0.97003 * 119.99376 * 0.02562 * 5 3 2 29 29 H 1.08996 * 109.47101 * 60.00019 * 6 5 3 30 30 H 1.09001 * 109.47107 * 300.00020 * 6 5 3 31 31 H 1.09001 * 109.46646 * 59.99879 * 7 6 5 32 32 H 1.09001 * 109.47188 * 300.00022 * 7 6 5 33 33 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 34 34 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 35 35 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 36 36 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 37 37 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 38 38 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 39 39 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 40 40 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 43 43 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 44 44 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4574 2.3272 0.0005 5 7 3.4133 1.2739 -0.0005 6 6 4.1458 2.5426 0.0000 7 6 5.6500 2.2630 -0.0001 8 6 6.4035 3.5680 -0.0001 9 8 5.7971 4.6183 0.0004 10 7 7.7513 3.5681 -0.0008 11 6 8.4999 4.8322 -0.0014 12 6 9.4923 4.8216 1.1656 13 6 10.3699 3.5679 1.0683 14 6 11.3857 3.5679 2.2125 15 6 12.3281 4.7323 2.0477 16 1 12.2143 5.4048 1.2103 17 6 13.3356 4.9389 2.9659 18 7 13.4746 4.1198 3.9853 19 14 14.5043 6.3818 2.7611 20 1 14.1379 7.1464 1.5420 21 1 14.4087 7.2686 3.9484 22 1 15.8951 5.8777 2.6306 23 6 9.4925 2.3179 1.1655 24 6 8.4999 2.3037 -0.0020 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8699 -0.9353 -0.0004 28 1 3.8982 0.4338 -0.0013 29 1 3.8828 3.1136 0.8905 30 1 3.8821 3.1148 -0.8895 31 1 5.9133 1.6918 -0.8903 32 1 5.9134 1.6910 0.8896 33 1 9.0422 4.9353 -0.9413 34 1 7.8082 5.6665 0.1147 35 1 10.1183 5.7127 1.1189 36 1 8.9451 4.8099 2.1083 37 1 10.8975 3.5680 0.1145 38 1 10.8611 3.6569 3.1639 39 1 11.9520 2.6368 2.1956 40 1 14.1836 4.2650 4.6311 41 1 8.9455 2.3296 2.1082 42 1 10.1200 1.4278 1.1200 43 1 7.8083 1.4696 0.1162 44 1 9.0401 2.2000 -0.9430 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490735824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:38 Heat of formation + Delta-G solvation = -73.083173 kcal Electronic energy + Delta-G solvation = -23077.784735 eV Core-core repulsion = 19608.722261 eV Total energy + Delta-G solvation = -3469.062474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.30305 -39.72843 -37.49241 -35.45824 -34.08752 -33.30702 -32.23616 -31.50359 -30.36989 -28.11381 -25.42031 -24.47867 -22.97431 -22.36283 -21.70757 -20.35610 -19.68293 -18.64171 -17.70430 -17.25599 -16.32314 -16.19263 -15.82289 -15.58013 -15.09030 -14.60986 -14.54909 -14.03211 -13.92369 -13.74489 -13.47161 -13.11986 -12.94176 -12.78845 -12.40299 -12.26046 -12.01498 -11.81892 -11.75084 -11.23103 -11.06188 -10.79388 -10.74015 -10.45174 -10.29118 -10.21849 -10.21816 -9.76712 -9.67350 -9.35417 -9.30879 -9.00262 -8.42906 -8.38046 -6.03328 -4.05189 1.04780 2.61889 2.72402 3.03321 3.24075 3.28575 3.36774 3.40010 4.32931 4.43017 4.54835 4.57004 4.68102 4.77707 4.94944 5.16196 5.19633 5.28192 5.31729 5.37698 5.53135 5.60885 5.63740 5.73230 5.76879 5.84531 5.91236 5.92649 6.02378 6.12239 6.28518 6.30638 6.47495 6.59466 6.93105 6.96571 7.06741 7.18858 7.48400 7.62181 7.76264 7.94005 7.95970 8.18883 8.38666 9.01415 9.59052 11.07924 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038962 B = 0.002363 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.474339 B =11848.512083 C =12151.080088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.214 4.214 3 C 0.540 3.460 4 O -0.541 6.541 5 N -0.727 5.727 6 C 0.134 3.866 7 C -0.153 4.153 8 C 0.517 3.483 9 O -0.545 6.545 10 N -0.604 5.604 11 C 0.108 3.892 12 C -0.118 4.118 13 C -0.081 4.081 14 C 0.027 3.973 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.131 4.131 24 C 0.106 3.894 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.401 0.599 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.591 -12.041 -9.434 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.235 4.235 3 C 0.329 3.671 4 O -0.420 6.420 5 N -0.379 5.379 6 C 0.010 3.990 7 C -0.193 4.193 8 C 0.304 3.696 9 O -0.423 6.423 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.156 4.156 13 C -0.100 4.100 14 C -0.010 4.010 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.169 4.169 24 C -0.017 4.017 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.235 0.765 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.209 -10.727 -9.285 23.880 hybrid contribution 1.264 0.138 0.076 1.274 sum -17.945 -10.589 -9.209 22.781 Atomic orbital electron populations 1.24765 0.95415 1.03388 0.89758 1.22772 0.96489 0.96879 1.07365 1.18714 0.82067 0.89997 0.76370 1.90825 1.68231 1.33348 1.49572 1.45904 1.06489 1.09780 1.75718 1.21057 0.88648 0.85086 1.04182 1.21833 0.95115 0.97374 1.04987 1.20222 0.82214 0.90700 0.76475 1.90719 1.67629 1.33515 1.50442 1.48171 1.05066 1.08290 1.72202 1.21793 0.94569 0.85470 0.99539 1.21951 0.96529 1.00483 0.96621 1.21253 0.95618 0.91651 1.01485 1.19127 0.92527 0.97057 0.92244 1.21273 1.13124 1.11510 1.09526 0.92520 1.25022 0.97726 0.96399 0.95365 1.69962 1.32804 1.37262 1.13469 0.86584 0.80925 0.82715 0.78060 1.19733 1.21079 1.21092 1.22040 0.97398 1.00261 0.97179 1.21871 0.94958 0.84858 0.99997 0.86757 0.86661 0.85510 0.76501 0.90379 0.90457 0.88305 0.88081 0.91821 0.89608 0.89702 0.92354 0.92315 0.96648 0.96614 0.93093 0.91953 0.90987 0.90516 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 14.31 28.91 0.41 -0.15 16 2 C -0.21 -1.42 10.03 -37.81 -0.38 -1.80 16 3 C 0.54 5.62 7.76 -12.67 -0.10 5.53 16 4 O -0.54 -8.14 16.22 5.26 0.09 -8.06 16 5 N -0.73 -5.97 5.55 -61.49 -0.34 -6.31 16 6 C 0.13 1.42 4.96 -4.04 -0.02 1.40 16 7 C -0.15 -1.35 4.16 -27.88 -0.12 -1.46 16 8 C 0.52 7.00 7.70 -10.99 -0.08 6.91 16 9 O -0.55 -9.51 15.39 5.56 0.09 -9.43 16 10 N -0.60 -8.14 2.97 -172.74 -0.51 -8.65 16 11 C 0.11 1.64 6.42 -3.71 -0.02 1.62 16 12 C -0.12 -2.09 5.21 -26.45 -0.14 -2.22 16 13 C -0.08 -1.50 2.10 -90.42 -0.19 -1.69 16 14 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 15 C -0.52 -13.86 8.39 -34.44 -0.29 -14.15 16 16 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.32 13.28 55.43 0.74 -25.58 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.13 -1.89 5.37 -26.59 -0.14 -2.03 16 24 C 0.11 1.18 6.34 -3.68 -0.02 1.16 16 25 H 0.11 0.85 7.49 -52.49 -0.39 0.45 16 26 H 0.12 0.34 8.06 -52.49 -0.42 -0.08 16 27 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 28 H 0.40 1.84 8.46 -40.82 -0.35 1.50 16 29 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.10 0.63 7.94 -51.93 -0.41 0.21 16 32 H 0.10 0.72 7.69 -51.93 -0.40 0.32 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 35 H 0.08 1.62 6.93 -51.93 -0.36 1.26 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 43 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -34.70 361.21 -7.99 -42.70 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.16 Total: -1.45 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.31 Total: -4.89 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.12 Total: -40.54 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.17 Total: -17.48 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.70 -7.99 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490735824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.387 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds