Wall clock time and date at job start Tue Mar 31 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32994 * 1 3 3 C 1.47099 * 120.00143 * 2 1 4 4 O 1.21617 * 120.00074 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00164 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00215 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47123 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.46931 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47337 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47119 * 120.00221 * 19 17 15 22 22 H 1.48507 * 109.47266 * 240.00028 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.07998 * 119.99697 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00200 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99697 * 180.02562 * 2 1 3 28 28 H 0.97003 * 119.99376 * 0.02562 * 5 3 2 29 29 H 1.08996 * 109.47101 * 60.00019 * 6 5 3 30 30 H 1.09001 * 109.47107 * 300.00020 * 6 5 3 31 31 H 1.09001 * 109.46646 * 59.99879 * 7 6 5 32 32 H 1.09001 * 109.47188 * 300.00022 * 7 6 5 33 33 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 34 34 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 35 35 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 36 36 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 37 37 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 38 38 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 39 39 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 40 40 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 43 43 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 44 44 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4574 2.3272 0.0005 5 7 3.4133 1.2739 -0.0005 6 6 4.1458 2.5426 0.0000 7 6 5.6500 2.2630 -0.0001 8 6 6.4035 3.5680 -0.0001 9 8 5.7971 4.6183 0.0004 10 7 7.7513 3.5681 -0.0008 11 6 8.4999 4.8322 -0.0014 12 6 9.4923 4.8216 1.1656 13 6 10.3699 3.5679 1.0683 14 6 11.3857 3.5679 2.2125 15 6 12.3281 4.7323 2.0477 16 1 12.2143 5.4048 1.2103 17 6 13.3356 4.9389 2.9659 18 7 13.4746 4.1198 3.9853 19 14 14.5043 6.3818 2.7611 20 1 14.1379 7.1464 1.5420 21 1 14.4087 7.2686 3.9484 22 1 15.8951 5.8777 2.6306 23 6 9.4925 2.3179 1.1655 24 6 8.4999 2.3037 -0.0020 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8699 -0.9353 -0.0004 28 1 3.8982 0.4338 -0.0013 29 1 3.8828 3.1136 0.8905 30 1 3.8821 3.1148 -0.8895 31 1 5.9133 1.6918 -0.8903 32 1 5.9134 1.6910 0.8896 33 1 9.0422 4.9353 -0.9413 34 1 7.8082 5.6665 0.1147 35 1 10.1183 5.7127 1.1189 36 1 8.9451 4.8099 2.1083 37 1 10.8975 3.5680 0.1145 38 1 10.8611 3.6569 3.1639 39 1 11.9520 2.6368 2.1956 40 1 14.1836 4.2650 4.6311 41 1 8.9455 2.3296 2.1082 42 1 10.1200 1.4278 1.1200 43 1 7.8083 1.4696 0.1162 44 1 9.0401 2.2000 -0.9430 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490735824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:37 Heat of formation + Delta-G solvation = -97.529149 kcal Electronic energy + Delta-G solvation = -23078.844792 eV Core-core repulsion = 19608.722261 eV Total energy + Delta-G solvation = -3470.122531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33918 -40.60830 -38.77275 -36.32059 -35.71461 -34.03312 -33.86520 -32.53638 -31.39931 -29.78605 -26.64838 -25.78508 -24.04153 -23.56059 -22.92939 -21.34815 -20.77974 -19.73990 -18.53807 -18.32497 -18.17671 -17.09384 -16.80960 -16.56279 -16.48404 -16.05110 -15.34116 -15.16776 -15.00237 -14.90289 -14.55989 -14.43979 -14.10560 -14.03950 -13.88435 -13.44280 -13.02583 -12.81769 -12.77992 -12.70608 -12.55150 -12.46447 -12.31845 -12.07446 -11.76541 -11.31662 -11.16394 -11.03605 -10.97687 -10.75793 -10.68805 -10.52568 -10.12775 -9.60049 -8.17826 -6.26319 0.49439 1.38440 1.40224 1.51788 1.59555 1.85308 2.34846 2.38709 2.41384 3.15973 3.52129 3.73535 3.94783 3.98597 4.03963 4.08000 4.15911 4.24602 4.31605 4.42466 4.45163 4.62480 4.72603 4.79322 4.81270 4.85515 4.90250 4.92360 5.02349 5.13216 5.31544 5.33073 5.36239 5.38320 5.39723 5.52286 5.56393 5.61867 5.82141 5.91123 6.29954 6.44840 6.58817 6.90917 7.14149 7.25931 7.42199 8.93883 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038962 B = 0.002363 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.474339 B =11848.512083 C =12151.080088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.220 4.220 3 C 0.528 3.472 4 O -0.602 6.602 5 N -0.708 5.708 6 C 0.140 3.860 7 C -0.137 4.137 8 C 0.510 3.490 9 O -0.593 6.593 10 N -0.606 5.606 11 C 0.117 3.883 12 C -0.110 4.110 13 C -0.075 4.075 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.061 0.939 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.956 3.044 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.279 1.279 23 C -0.126 4.126 24 C 0.110 3.890 25 H 0.090 0.910 26 H 0.152 0.848 27 H 0.168 0.832 28 H 0.423 0.577 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.063 0.937 38 H -0.017 1.017 39 H -0.006 1.006 40 H 0.261 0.739 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.861 -14.612 -11.137 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.241 4.241 3 C 0.319 3.681 4 O -0.484 6.484 5 N -0.361 5.361 6 C 0.015 3.985 7 C -0.176 4.176 8 C 0.300 3.700 9 O -0.475 6.475 10 N -0.338 5.338 11 C -0.006 4.006 12 C -0.149 4.149 13 C -0.094 4.094 14 C -0.005 4.005 15 C -0.566 4.566 16 H 0.079 0.921 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.782 3.218 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.205 1.205 23 C -0.164 4.164 24 C -0.011 4.011 25 H 0.108 0.892 26 H 0.170 0.830 27 H 0.185 0.815 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.012 0.988 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.443 -13.360 -11.003 26.031 hybrid contribution 1.331 0.944 0.648 1.756 sum -18.112 -12.416 -10.355 24.278 Atomic orbital electron populations 1.25016 0.95468 1.04006 0.88187 1.22914 0.96624 0.96215 1.08303 1.19526 0.82648 0.90730 0.75203 1.90799 1.69435 1.35746 1.52456 1.45700 1.05973 1.09911 1.74479 1.20778 0.90396 0.85771 1.01561 1.21808 0.92502 0.95090 1.08245 1.21056 0.82083 0.91831 0.75072 1.90708 1.68515 1.35782 1.52463 1.48267 1.05309 1.08386 1.71870 1.21534 0.93786 0.86551 0.98728 1.21798 0.96605 0.99388 0.97064 1.21113 0.95114 0.94230 0.98913 1.19030 0.93157 0.95147 0.93168 1.21722 1.13352 1.12145 1.09362 0.92067 1.25914 0.99714 0.99176 0.95179 1.70087 1.33752 1.39226 1.14465 0.85525 0.78705 0.79356 0.78234 1.18581 1.21005 1.20498 1.21963 0.97636 0.98254 0.98592 1.22060 0.95038 0.84945 0.99071 0.89205 0.82999 0.81506 0.73851 0.93581 0.92928 0.84204 0.85147 0.90275 0.90991 0.91809 0.94280 0.91880 0.99830 0.98759 0.93032 0.92914 0.89795 0.85866 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 14.31 66.65 0.95 0.09 16 2 C -0.22 -2.35 10.03 23.43 0.23 -2.12 16 3 C 0.53 10.55 7.76 86.57 0.67 11.22 16 4 O -0.60 -18.86 16.22 -4.08 -0.07 -18.92 16 5 N -0.71 -10.07 5.55 -466.71 -2.59 -12.66 16 6 C 0.14 2.83 4.96 86.38 0.43 3.26 16 7 C -0.14 -1.91 4.16 29.85 0.12 -1.79 16 8 C 0.51 12.90 7.70 87.66 0.67 13.58 16 9 O -0.59 -20.96 15.39 -3.03 -0.05 -21.01 16 10 N -0.61 -14.90 2.97 -818.81 -2.43 -17.33 16 11 C 0.12 3.46 6.42 86.36 0.55 4.02 16 12 C -0.11 -3.96 5.21 30.78 0.16 -3.80 16 13 C -0.08 -2.74 2.10 -10.66 -0.02 -2.77 16 14 C 0.03 1.59 4.45 29.85 0.13 1.73 16 15 C -0.53 -28.86 8.39 25.60 0.21 -28.64 16 16 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 17 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 18 N -0.93 -56.20 13.28 21.45 0.28 -55.92 16 19 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.13 -3.37 5.37 30.69 0.16 -3.21 16 24 C 0.11 1.98 6.34 86.38 0.55 2.53 16 25 H 0.09 1.34 7.49 -2.91 -0.02 1.32 16 26 H 0.15 0.34 8.06 -2.91 -0.02 0.32 16 27 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 28 H 0.42 2.10 8.46 -92.71 -0.78 1.32 16 29 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 30 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 31 H 0.14 0.92 7.94 -2.39 -0.02 0.90 16 32 H 0.13 1.17 7.69 -2.39 -0.02 1.15 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.35 7.00 -2.39 -0.02 2.33 16 35 H 0.06 2.52 6.93 -2.39 -0.02 2.50 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.12 1.15 5.93 -2.39 -0.01 1.13 16 44 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -82.38 361.21 2.67 -79.70 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.20 Total: 5.70 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.30 Total: -5.59 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -4.74 Total: -85.91 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.11 Total: -39.93 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -82.38 2.67 -79.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490735824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.827 kcal (2) G-P(sol) polarization free energy of solvation -82.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds