Wall clock time and date at job start Tue Mar 31 2020 06:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08990 * 109.29680 * 2 1 4 4 C 1.52901 * 109.13906 * 119.46960 * 2 1 3 5 5 C 1.53350 * 108.68374 * 170.93564 * 4 2 1 6 6 H 1.09001 * 109.70306 * 52.22966 * 5 4 2 7 7 C 1.50697 * 109.67404 * 172.74885 * 5 4 2 8 8 O 1.21280 * 120.00225 * 23.74749 * 7 5 4 9 9 N 1.34782 * 119.99913 * 203.47220 * 7 5 4 10 10 C 1.46923 * 120.63254 * 174.79332 * 9 7 5 11 11 C 1.52755 * 109.01141 * 233.58528 * 10 9 7 12 12 C 1.53045 * 109.38029 * 305.58832 * 11 10 9 13 13 C 1.50699 * 109.45876 * 181.25969 * 12 11 10 14 14 H 1.07997 * 120.00224 * 239.92885 * 13 12 11 15 15 C 1.37880 * 120.00216 * 59.93237 * 13 12 11 16 16 N 1.31519 * 119.99664 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00444 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46656 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47028 * 119.99479 * 17 15 13 20 20 H 1.48498 * 109.47295 * 240.00230 * 17 15 13 21 21 C 1.53035 * 109.53816 * 61.23841 * 12 11 10 22 22 C 1.46928 * 120.62811 * 355.07062 * 9 7 5 23 23 C 1.53073 * 108.42740 * 292.48177 * 5 4 2 24 24 C 1.50181 * 109.88872 * 48.90048 * 23 5 4 25 25 O 1.21274 * 118.24652 * 162.39814 * 24 23 5 26 26 N 1.33360 * 123.50866 * 342.41361 * 24 23 5 27 27 H 1.09000 * 109.46898 * 179.58533 * 1 2 3 28 28 H 1.09003 * 109.46665 * 299.58356 * 1 2 3 29 29 H 1.08997 * 109.46909 * 59.57788 * 1 2 3 30 30 H 1.09005 * 109.58701 * 51.18648 * 4 2 1 31 31 H 1.08997 * 109.61094 * 290.69879 * 4 2 1 32 32 H 1.09006 * 109.58608 * 353.42221 * 10 9 7 33 33 H 1.09005 * 109.58790 * 113.83902 * 10 9 7 34 34 H 1.08996 * 109.56700 * 185.55123 * 11 10 9 35 35 H 1.08999 * 109.38997 * 65.51307 * 11 10 9 36 36 H 1.09003 * 109.44797 * 301.22252 * 12 11 10 37 37 H 0.97004 * 119.99918 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.49651 * 178.68151 * 21 12 11 39 39 H 1.08998 * 109.52270 * 58.60788 * 21 12 11 40 40 H 1.08999 * 109.58377 * 246.15604 * 22 9 7 41 41 H 1.08999 * 109.58625 * 6.44447 * 22 9 7 42 42 H 1.08993 * 109.40166 * 169.02446 * 23 5 4 43 43 H 1.08997 * 109.39935 * 288.85910 * 23 5 4 44 44 H 0.97000 * 117.94256 * 182.22191 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0314 -0.7106 1.2576 5 6 3.5477 -0.9068 1.1396 6 1 4.0245 0.0454 0.9068 7 6 4.0925 -1.4429 2.4383 8 8 3.3647 -2.0456 3.1985 9 7 5.3900 -1.2574 2.7525 10 6 5.9099 -1.6729 4.0624 11 6 6.6107 -0.4850 4.7191 12 6 7.6740 0.0672 3.7669 13 6 8.3877 1.2196 4.4252 14 1 8.3666 2.1988 3.9702 15 6 9.0678 1.0240 5.6086 16 7 9.0932 -0.1683 6.1630 17 14 9.9530 2.4524 6.4244 18 1 9.7738 3.6783 5.6056 19 1 9.3891 2.6750 7.7799 20 1 11.4004 2.1392 6.5355 21 6 7.0053 0.5508 2.4781 22 6 6.3101 -0.6304 1.7938 23 6 3.8199 -1.9081 0.0142 24 6 3.0473 -1.5193 -1.2135 25 8 3.3832 -1.9945 -2.2775 26 7 2.0117 -0.6792 -1.1963 27 1 -0.3633 -1.0276 -0.0074 28 1 -0.3633 0.5074 0.8937 29 1 -0.3633 0.5204 -0.8862 30 1 1.5431 -1.6810 1.3482 31 1 1.8085 -0.1030 2.1346 32 1 5.0857 -2.0041 4.6943 33 1 6.6225 -2.4872 3.9312 34 1 7.0848 -0.8078 5.6460 35 1 5.8782 0.2923 4.9366 36 1 8.3926 -0.7177 3.5307 37 1 9.5719 -0.3061 6.9953 38 1 7.7603 0.9654 1.8099 39 1 6.2689 1.3184 2.7157 40 1 7.0560 -1.3580 1.4739 41 1 5.7503 -0.2762 0.9283 42 1 4.8854 -1.9139 -0.2154 43 1 3.5128 -2.9039 0.3335 44 1 1.5500 -0.5097 -2.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542680456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:58 Heat of formation + Delta-G solvation = -91.522428 kcal Electronic energy + Delta-G solvation = -24617.086336 eV Core-core repulsion = 21147.224276 eV Total energy + Delta-G solvation = -3469.862060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93079 -39.48885 -37.25291 -36.63508 -33.91185 -33.30003 -31.36558 -31.07629 -30.22511 -27.48576 -26.44987 -24.60725 -22.91755 -22.59827 -22.03289 -19.99619 -19.31729 -18.33491 -17.46643 -17.12920 -16.46270 -16.25310 -15.66786 -15.12847 -14.89425 -14.68343 -14.57207 -13.89484 -13.57167 -13.46548 -13.23591 -12.99438 -12.83544 -12.71909 -12.42109 -12.26260 -11.90285 -11.78566 -11.68395 -11.30013 -11.17192 -11.08865 -10.97900 -10.67075 -10.47017 -10.22415 -10.13179 -9.62912 -9.49572 -9.34783 -9.14593 -8.97072 -8.41878 -8.07701 -6.06221 -4.13055 2.44905 2.79581 3.03904 3.24986 3.30988 3.33817 3.36759 4.23376 4.34527 4.37838 4.40015 4.58400 4.80007 4.90533 4.92063 5.08313 5.23835 5.32869 5.35256 5.37746 5.45072 5.62243 5.68576 5.70526 5.76511 5.86152 5.97446 6.00707 6.20487 6.35627 6.40349 6.53826 6.55323 6.76398 6.89646 7.09499 7.12555 7.27631 7.64910 7.81583 7.87834 8.00407 8.01568 8.35132 8.44399 8.90602 9.52505 10.99247 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.003497 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.135724 B = 8005.809185 C = 8071.953988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.114 4.114 6 H 0.102 0.898 7 C 0.517 3.483 8 O -0.551 6.551 9 N -0.596 5.596 10 C 0.109 3.891 11 C -0.123 4.123 12 C 0.048 3.952 13 C -0.514 4.514 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.125 4.125 22 C 0.102 3.898 23 C -0.125 4.125 24 C 0.527 3.473 25 O -0.558 6.558 26 N -0.716 5.716 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.028 0.972 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.025 0.153 -10.996 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.135 4.135 6 H 0.120 0.880 7 C 0.304 3.696 8 O -0.430 6.430 9 N -0.328 5.328 10 C -0.012 4.012 11 C -0.162 4.162 12 C 0.030 3.970 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.163 4.163 22 C -0.021 4.021 23 C -0.165 4.165 24 C 0.314 3.686 25 O -0.436 6.436 26 N -0.368 5.368 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.006 -0.550 -10.749 17.664 hybrid contribution 0.431 0.973 0.306 1.107 sum -13.576 0.423 -10.443 17.133 Atomic orbital electron populations 1.22159 0.93911 1.03098 1.02994 1.21040 0.94858 0.96345 0.84744 0.90312 1.21792 0.93343 1.02767 0.97050 1.21469 0.97681 1.00584 0.93791 0.87970 1.20210 0.81997 0.80002 0.87422 1.90661 1.57866 1.42276 1.52225 1.48272 1.08209 1.58962 1.17321 1.21824 0.98025 0.98849 0.82527 1.21944 0.97290 0.94544 1.02396 1.18641 0.92677 0.96186 0.89531 1.21214 1.31416 0.95558 1.06994 0.92656 1.24969 0.96252 0.95599 0.97155 1.69852 1.42640 1.21109 1.19270 0.86562 0.79478 0.82740 0.79367 1.19846 1.21044 1.21039 1.22021 0.99028 0.95648 0.99585 1.21965 0.92560 0.96488 0.91098 1.21634 1.02286 1.00887 0.91678 1.20025 0.80009 0.77863 0.90695 1.90767 1.67415 1.53964 1.31468 1.45661 1.32729 1.46319 1.12125 0.91732 0.90600 0.91967 0.89785 0.89072 0.90623 0.92236 0.87749 0.94389 0.95413 0.92970 0.91980 0.92841 0.91510 0.91132 0.87397 0.87525 0.76639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.39 37.16 0.35 -0.57 16 2 C 0.13 0.99 3.68 -68.38 -0.25 0.74 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.11 -1.07 3.99 -26.60 -0.11 -1.18 16 5 C -0.11 -1.29 1.71 -91.55 -0.16 -1.45 16 6 H 0.10 1.07 6.54 -51.93 -0.34 0.73 16 7 C 0.52 8.05 6.80 -10.98 -0.07 7.98 16 8 O -0.55 -10.26 15.68 5.56 0.09 -10.17 16 9 N -0.60 -9.91 2.98 -173.03 -0.52 -10.42 16 10 C 0.11 2.08 6.39 -3.94 -0.03 2.06 16 11 C -0.12 -2.73 5.14 -26.83 -0.14 -2.87 16 12 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 13 C -0.51 -13.31 8.56 -34.44 -0.29 -13.60 16 14 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -24.29 11.30 55.43 0.63 -23.67 16 17 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.12 -2.28 5.30 -26.61 -0.14 -2.42 16 22 C 0.10 1.52 5.96 -3.71 -0.02 1.50 16 23 C -0.12 -1.39 5.19 -28.10 -0.15 -1.54 16 24 C 0.53 6.25 7.71 -11.87 -0.09 6.16 16 25 O -0.56 -8.74 17.78 5.56 0.10 -8.64 16 26 N -0.72 -6.34 5.12 -54.86 -0.28 -6.62 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.47 7.04 -51.93 -0.37 1.11 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 2.62 6.03 -51.93 -0.31 2.30 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.85 4.96 -51.93 -0.26 0.59 16 42 H 0.11 1.18 7.28 -51.93 -0.38 0.80 16 43 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 44 H 0.40 3.07 8.67 -40.82 -0.35 2.71 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -30.94 343.20 -8.25 -39.20 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.04 Total: 2.37 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.38 Total: -2.76 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.17 Total: -40.71 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.19 Total: -18.81 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.94 -8.25 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542680456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.324 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds