Wall clock time and date at job start Tue Mar 31 2020 06:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08990 * 109.29680 * 2 1 4 4 C 1.52901 * 109.13906 * 119.46960 * 2 1 3 5 5 C 1.53350 * 108.68374 * 170.93564 * 4 2 1 6 6 H 1.09001 * 109.70306 * 52.22966 * 5 4 2 7 7 C 1.50697 * 109.67404 * 172.74885 * 5 4 2 8 8 O 1.21280 * 120.00225 * 23.74749 * 7 5 4 9 9 N 1.34782 * 119.99913 * 203.47220 * 7 5 4 10 10 C 1.46923 * 120.63254 * 174.79332 * 9 7 5 11 11 C 1.52755 * 109.01141 * 233.58528 * 10 9 7 12 12 C 1.53045 * 109.38029 * 305.58832 * 11 10 9 13 13 C 1.50699 * 109.45876 * 181.25969 * 12 11 10 14 14 H 1.07997 * 120.00224 * 239.92885 * 13 12 11 15 15 C 1.37880 * 120.00216 * 59.93237 * 13 12 11 16 16 N 1.31519 * 119.99664 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00444 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46656 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47028 * 119.99479 * 17 15 13 20 20 H 1.48498 * 109.47295 * 240.00230 * 17 15 13 21 21 C 1.53035 * 109.53816 * 61.23841 * 12 11 10 22 22 C 1.46928 * 120.62811 * 355.07062 * 9 7 5 23 23 C 1.53073 * 108.42740 * 292.48177 * 5 4 2 24 24 C 1.50181 * 109.88872 * 48.90048 * 23 5 4 25 25 O 1.21274 * 118.24652 * 162.39814 * 24 23 5 26 26 N 1.33360 * 123.50866 * 342.41361 * 24 23 5 27 27 H 1.09000 * 109.46898 * 179.58533 * 1 2 3 28 28 H 1.09003 * 109.46665 * 299.58356 * 1 2 3 29 29 H 1.08997 * 109.46909 * 59.57788 * 1 2 3 30 30 H 1.09005 * 109.58701 * 51.18648 * 4 2 1 31 31 H 1.08997 * 109.61094 * 290.69879 * 4 2 1 32 32 H 1.09006 * 109.58608 * 353.42221 * 10 9 7 33 33 H 1.09005 * 109.58790 * 113.83902 * 10 9 7 34 34 H 1.08996 * 109.56700 * 185.55123 * 11 10 9 35 35 H 1.08999 * 109.38997 * 65.51307 * 11 10 9 36 36 H 1.09003 * 109.44797 * 301.22252 * 12 11 10 37 37 H 0.97004 * 119.99918 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.49651 * 178.68151 * 21 12 11 39 39 H 1.08998 * 109.52270 * 58.60788 * 21 12 11 40 40 H 1.08999 * 109.58377 * 246.15604 * 22 9 7 41 41 H 1.08999 * 109.58625 * 6.44447 * 22 9 7 42 42 H 1.08993 * 109.40166 * 169.02446 * 23 5 4 43 43 H 1.08997 * 109.39935 * 288.85910 * 23 5 4 44 44 H 0.97000 * 117.94256 * 182.22191 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0314 -0.7106 1.2576 5 6 3.5477 -0.9068 1.1396 6 1 4.0245 0.0454 0.9068 7 6 4.0925 -1.4429 2.4383 8 8 3.3647 -2.0456 3.1985 9 7 5.3900 -1.2574 2.7525 10 6 5.9099 -1.6729 4.0624 11 6 6.6107 -0.4850 4.7191 12 6 7.6740 0.0672 3.7669 13 6 8.3877 1.2196 4.4252 14 1 8.3666 2.1988 3.9702 15 6 9.0678 1.0240 5.6086 16 7 9.0932 -0.1683 6.1630 17 14 9.9530 2.4524 6.4244 18 1 9.7738 3.6783 5.6056 19 1 9.3891 2.6750 7.7799 20 1 11.4004 2.1392 6.5355 21 6 7.0053 0.5508 2.4781 22 6 6.3101 -0.6304 1.7938 23 6 3.8199 -1.9081 0.0142 24 6 3.0473 -1.5193 -1.2135 25 8 3.3832 -1.9945 -2.2775 26 7 2.0117 -0.6792 -1.1963 27 1 -0.3633 -1.0276 -0.0074 28 1 -0.3633 0.5074 0.8937 29 1 -0.3633 0.5204 -0.8862 30 1 1.5431 -1.6810 1.3482 31 1 1.8085 -0.1030 2.1346 32 1 5.0857 -2.0041 4.6943 33 1 6.6225 -2.4872 3.9312 34 1 7.0848 -0.8078 5.6460 35 1 5.8782 0.2923 4.9366 36 1 8.3926 -0.7177 3.5307 37 1 9.5719 -0.3061 6.9953 38 1 7.7603 0.9654 1.8099 39 1 6.2689 1.3184 2.7157 40 1 7.0560 -1.3580 1.4739 41 1 5.7503 -0.2762 0.9283 42 1 4.8854 -1.9139 -0.2154 43 1 3.5128 -2.9039 0.3335 44 1 1.5500 -0.5097 -2.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542680456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:57 Heat of formation + Delta-G solvation = -111.592967 kcal Electronic energy + Delta-G solvation = -24617.956660 eV Core-core repulsion = 21147.224276 eV Total energy + Delta-G solvation = -3470.732384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93894 -40.67912 -38.57617 -37.69803 -35.42950 -34.51178 -32.82162 -32.07913 -31.72681 -28.30166 -28.05389 -25.86579 -24.43454 -23.59551 -23.24061 -21.42667 -20.23415 -19.72063 -18.61003 -18.27863 -17.98818 -17.30289 -16.85921 -16.51502 -16.17174 -16.02125 -15.52714 -15.06729 -14.89151 -14.73423 -14.55620 -14.32526 -14.14408 -13.77093 -13.59980 -13.32423 -13.09624 -13.03148 -12.83400 -12.58336 -12.45320 -12.40111 -12.18071 -12.06317 -11.95208 -11.82608 -11.41714 -11.32225 -11.01937 -10.81137 -10.53705 -10.38165 -10.10201 -9.54825 -8.07103 -6.20743 1.40811 1.44172 1.50615 1.53751 1.60560 2.03580 2.27777 2.44544 3.20088 3.27192 3.54645 3.61179 3.70824 3.90430 4.05235 4.19350 4.28172 4.32599 4.34906 4.44168 4.51309 4.56647 4.61724 4.68428 4.73312 4.85728 4.93146 4.94674 5.00089 5.04670 5.17093 5.20475 5.26784 5.36568 5.47127 5.53858 5.68158 5.83012 5.99575 6.13565 6.29317 6.39236 6.52491 6.91653 7.15390 7.16866 7.47840 8.96454 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.003497 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.135724 B = 8005.809185 C = 8071.953988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.100 0.900 4 C -0.111 4.111 5 C -0.103 4.103 6 H 0.122 0.878 7 C 0.516 3.484 8 O -0.583 6.583 9 N -0.601 5.601 10 C 0.120 3.880 11 C -0.111 4.111 12 C 0.043 3.957 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.117 4.117 22 C 0.107 3.893 23 C -0.121 4.121 24 C 0.529 3.471 25 O -0.600 6.600 26 N -0.703 5.703 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.001 0.999 37 H 0.259 0.741 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 1.675 -12.611 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.124 4.124 6 H 0.140 0.860 7 C 0.306 3.694 8 O -0.464 6.464 9 N -0.332 5.332 10 C -0.002 4.002 11 C -0.150 4.150 12 C 0.025 3.975 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.155 4.155 22 C -0.015 4.015 23 C -0.161 4.161 24 C 0.317 3.683 25 O -0.482 6.482 26 N -0.354 5.354 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.019 0.981 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -15.233 1.007 -12.376 19.653 hybrid contribution 0.771 0.498 0.861 1.258 sum -14.463 1.505 -11.515 18.548 Atomic orbital electron populations 1.22142 0.92322 1.03092 1.04266 1.21159 0.96024 0.96534 0.82753 0.88245 1.21812 0.91927 1.02676 0.98478 1.21465 0.98854 1.00999 0.91079 0.86034 1.20923 0.81055 0.79019 0.88444 1.90649 1.58468 1.43576 1.53688 1.48298 1.09087 1.59297 1.16501 1.21453 0.97465 0.97315 0.83980 1.21684 0.96784 0.95225 1.01286 1.18627 0.92435 0.94636 0.91832 1.21627 1.31542 0.96378 1.07249 0.92767 1.25703 0.97204 0.97723 0.97956 1.69990 1.43367 1.22736 1.19527 0.85639 0.78240 0.80251 0.78309 1.19051 1.21060 1.20906 1.21880 0.99188 0.96883 0.97583 1.22038 0.92815 0.95304 0.91330 1.21586 1.02681 1.00563 0.91254 1.20025 0.80409 0.77894 0.90011 1.90757 1.68884 1.55837 1.32771 1.45639 1.31554 1.45058 1.13154 0.92433 0.89681 0.90367 0.90844 0.88933 0.91267 0.92411 0.91102 0.95569 0.98084 0.93143 0.90977 0.92827 0.90800 0.87126 0.86832 0.88016 0.75678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.39 71.99 0.68 -0.60 16 2 C 0.14 1.55 3.68 45.10 0.17 1.72 16 3 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.11 -1.85 3.99 30.68 0.12 -1.73 16 5 C -0.10 -2.06 1.71 -11.40 -0.02 -2.08 16 6 H 0.12 2.01 6.54 -2.39 -0.02 1.99 16 7 C 0.52 15.29 6.80 87.66 0.60 15.89 16 8 O -0.58 -21.31 15.68 -3.03 -0.05 -21.36 16 9 N -0.60 -19.21 2.98 -819.73 -2.44 -21.65 16 10 C 0.12 4.65 6.39 86.22 0.55 5.20 16 11 C -0.11 -5.06 5.14 30.53 0.16 -4.90 16 12 C 0.04 2.00 2.07 -11.51 -0.02 1.97 16 13 C -0.53 -27.65 8.56 25.60 0.22 -27.43 16 14 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 15 C 0.01 0.68 5.30 84.65 0.45 1.12 16 16 N -0.92 -51.34 11.30 21.45 0.24 -51.10 16 17 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 C -0.12 -4.10 5.30 30.67 0.16 -3.93 16 22 C 0.11 2.95 5.96 86.36 0.51 3.46 16 23 C -0.12 -2.43 5.19 29.71 0.15 -2.27 16 24 C 0.53 11.38 7.71 87.71 0.68 12.05 16 25 O -0.60 -17.97 17.78 -3.01 -0.05 -18.02 16 26 N -0.70 -10.37 5.12 -446.66 -2.29 -12.66 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 1.41 8.07 -2.38 -0.02 1.39 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 2.75 7.04 -2.38 -0.02 2.73 16 33 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.07 3.71 6.03 -2.39 -0.01 3.70 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.11 2.20 4.96 -2.39 -0.01 2.19 16 42 H 0.11 2.17 7.28 -2.39 -0.02 2.16 16 43 H 0.10 2.19 8.09 -2.39 -0.02 2.17 16 44 H 0.41 5.06 8.67 -92.71 -0.80 4.26 16 Total: -1.00 -68.45 343.20 2.03 -66.42 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.20 Total: 15.47 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 4.40 Total: -1.51 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.49 Total: -85.41 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.10 Total: -39.39 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -68.45 2.03 -66.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542680456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.176 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds