Wall clock time and date at job start Tue Mar 31 2020 07:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47294 * 2 1 4 4 C 1.46906 * 111.00261 * 157.68765 * 3 2 1 5 5 C 1.52993 * 109.47323 * 287.99212 * 4 3 2 6 6 C 1.46902 * 111.00285 * 281.64782 * 3 2 1 7 7 C 1.50708 * 109.47105 * 169.99822 * 6 3 2 8 8 C 1.35127 * 125.61801 * 89.99830 * 7 6 3 9 9 C 1.40356 * 107.11789 * 180.02562 * 8 7 6 10 10 C 1.36542 * 106.70726 * 0.24509 * 9 8 7 11 11 C 1.46658 * 125.99087 * 179.74370 * 10 9 8 12 12 O 1.21698 * 119.99610 * 354.11026 * 11 10 9 13 13 N 1.34779 * 120.00235 * 174.11312 * 11 10 9 14 14 C 1.46499 * 119.99909 * 1.35003 * 13 11 10 15 15 C 1.46499 * 120.00013 * 181.35050 * 13 11 10 16 16 C 1.50697 * 109.47153 * 90.00149 * 15 13 11 17 17 H 1.08002 * 119.99901 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00258 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99665 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00185 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47221 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47253 * 119.99721 * 20 18 16 23 23 H 1.48497 * 109.47296 * 239.99621 * 20 18 16 24 24 O 1.33923 * 125.61298 * 270.02193 * 7 6 3 25 25 H 1.09000 * 109.46904 * 306.30823 * 1 2 3 26 26 H 1.08999 * 109.47038 * 66.30635 * 1 2 3 27 27 H 1.08993 * 109.47032 * 186.30781 * 1 2 3 28 28 H 1.09005 * 109.47253 * 240.00737 * 2 1 3 29 29 H 1.08997 * 109.47525 * 120.00645 * 2 1 3 30 30 H 1.08998 * 109.46451 * 47.99231 * 4 3 2 31 31 H 1.08998 * 109.47185 * 167.98916 * 4 3 2 32 32 H 1.08994 * 109.47185 * 185.69721 * 5 4 3 33 33 H 1.09006 * 109.47328 * 305.69413 * 5 4 3 34 34 H 1.09001 * 109.47514 * 65.69350 * 5 4 3 35 35 H 1.08995 * 109.47376 * 49.99988 * 6 3 2 36 36 H 1.09001 * 109.46959 * 289.99313 * 6 3 2 37 37 H 1.08001 * 126.44039 * 0.02562 * 8 7 6 38 38 H 1.07998 * 126.64770 * 179.97438 * 9 8 7 39 39 H 1.09003 * 109.46932 * 84.18624 * 14 13 11 40 40 H 1.08998 * 109.47361 * 204.18706 * 14 13 11 41 41 H 1.09002 * 109.47439 * 324.19016 * 14 13 11 42 42 H 1.08998 * 109.47340 * 209.99812 * 15 13 11 43 43 H 1.09003 * 109.47212 * 330.00107 * 15 13 11 44 44 H 0.97007 * 119.99688 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.3914 1.4584 0.5207 5 6 3.3772 1.2161 2.0312 6 6 1.9342 1.9736 -1.3432 7 6 2.2080 3.4534 -1.2615 8 6 3.4223 4.0362 -1.3702 9 6 3.2298 5.4200 -1.2361 10 6 1.8919 5.6135 -1.0444 11 6 1.2272 6.9063 -0.8498 12 8 1.8901 7.9212 -0.7430 13 7 -0.1177 6.9702 -0.7892 14 6 -0.9145 5.7448 -0.8880 15 6 -0.7828 8.2651 -0.6244 16 6 -1.0674 8.8596 -1.9796 17 1 -0.7811 8.3265 -2.8741 18 6 -1.6923 10.0847 -2.0775 19 7 -2.0405 10.7342 -0.9882 20 14 -2.0444 10.8220 -3.7573 21 1 -1.5568 9.9003 -4.8146 22 1 -3.5075 11.0241 -3.9124 23 1 -1.3486 12.1281 -3.8804 24 8 1.2879 4.4072 -1.0687 25 1 -0.3633 0.6085 0.8281 26 1 -0.3633 0.4130 -0.9410 27 1 -0.3633 -1.0214 0.1129 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 4.0049 0.6985 0.0366 31 1 3.8058 2.4453 0.3149 32 1 4.3785 1.3702 2.4333 33 1 2.6846 1.9123 2.5044 34 1 3.0583 0.1934 2.2323 35 1 0.9355 1.8108 -1.7484 36 1 2.6714 1.5031 -1.9937 37 1 4.3638 3.5319 -1.5303 38 1 3.9928 6.1835 -1.2726 39 1 -0.9842 5.2766 0.0939 40 1 -1.9146 5.9895 -1.2456 41 1 -0.4375 5.0565 -1.5857 42 1 -1.7195 8.1264 -0.0846 43 1 -0.1351 8.9372 -0.0615 44 1 -2.4806 11.5960 -1.0571 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592518992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:23 Heat of formation + Delta-G solvation = -11.311725 kcal Electronic energy + Delta-G solvation = -23988.769802 eV Core-core repulsion = 20522.385939 eV Total energy + Delta-G solvation = -3466.383863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.53888 -38.74180 -38.25918 -34.98760 -33.05192 -32.54611 -32.06173 -31.65496 -29.06655 -27.73624 -26.18275 -25.36475 -23.41438 -23.16058 -21.51791 -21.28815 -20.49540 -19.34188 -16.99423 -16.67712 -16.42418 -16.27649 -15.47532 -15.39824 -15.15736 -14.52840 -14.30221 -14.07555 -13.95059 -13.63887 -13.37856 -12.95762 -12.62582 -12.53458 -12.39759 -12.36115 -12.12032 -12.08696 -11.79430 -11.76526 -11.53068 -11.18506 -11.16689 -10.94002 -10.85396 -10.58366 -10.17196 -9.80287 -9.63279 -9.33090 -8.73193 -8.44039 -8.33767 -7.66522 -6.04652 -4.09687 1.37630 2.45327 2.85646 3.30734 3.38105 3.42632 3.65508 3.81108 3.96302 4.44875 4.56864 4.63682 4.76758 4.88463 4.95610 5.03538 5.10272 5.19128 5.20505 5.25186 5.30235 5.32731 5.46788 5.59802 5.71239 5.73641 5.77271 5.86207 5.95606 5.99131 6.00211 6.04191 6.07037 6.39196 6.52001 6.70019 6.74925 6.96033 7.19689 7.39787 7.49917 7.91473 8.20955 8.31338 8.82092 8.99125 9.55272 11.03471 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.003354 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.965788 B = 8347.161115 C = 8722.915851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.040 3.960 5 C -0.146 4.146 6 C 0.132 3.868 7 C 0.005 3.995 8 C -0.213 4.213 9 C -0.140 4.140 10 C -0.047 4.047 11 C 0.584 3.416 12 O -0.522 6.522 13 N -0.587 5.587 14 C 0.082 3.918 15 C 0.244 3.756 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 O -0.145 6.145 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.148 0.852 38 H 0.157 0.843 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 -23.847 1.811 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.261 5.261 4 C -0.087 4.087 5 C -0.204 4.204 6 C 0.005 3.995 7 C -0.048 4.048 8 C -0.233 4.233 9 C -0.161 4.161 10 C -0.100 4.100 11 C 0.370 3.630 12 O -0.401 6.401 13 N -0.317 5.317 14 C -0.062 4.062 15 C 0.125 3.875 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 O -0.040 6.040 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.165 0.835 38 H 0.174 0.826 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.796 -22.897 2.293 24.296 hybrid contribution 0.458 -0.019 -1.495 1.564 sum 8.254 -22.916 0.798 24.370 Atomic orbital electron populations 1.21793 0.94565 1.01516 1.02821 1.22137 0.96546 0.88013 1.01044 1.62004 1.22987 1.18881 1.22241 1.22251 0.88325 1.02053 0.96074 1.21768 1.01878 1.01731 0.95015 1.20491 1.03271 0.85300 0.90465 1.22415 0.87719 0.90830 1.03814 1.21463 0.97921 0.93967 1.09959 1.21831 0.95212 0.96417 1.02620 1.22703 0.92781 0.84382 1.10115 1.16678 0.82715 0.84684 0.78938 1.90847 1.64419 1.33109 1.51677 1.48128 1.04680 1.10250 1.68679 1.21820 0.96979 0.86528 1.00849 1.19416 0.92604 0.77827 0.97659 1.21467 1.38587 1.04148 0.92484 0.92276 1.24938 0.95516 0.96585 0.97044 1.69947 1.40894 1.14966 1.27462 0.86415 0.77753 0.79190 0.83913 1.19767 1.20917 1.20819 1.84315 1.36186 1.14491 1.68979 0.91488 0.92686 0.92374 0.94525 0.90449 0.94805 0.89799 0.92282 0.91576 0.92991 0.88648 0.91594 0.83465 0.82577 0.93373 0.90416 0.91402 0.94493 0.93484 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.97 37.16 0.37 -0.71 16 2 C 0.05 0.36 5.56 -3.83 -0.02 0.34 16 3 N -0.54 -4.99 4.37 -236.07 -1.03 -6.02 16 4 C 0.04 0.35 5.54 -3.82 -0.02 0.33 16 5 C -0.15 -1.17 9.89 37.15 0.37 -0.81 16 6 C 0.13 1.25 5.31 -4.97 -0.03 1.22 16 7 C 0.01 0.07 6.27 -35.41 -0.22 -0.16 16 8 C -0.21 -2.71 9.07 -39.89 -0.36 -3.07 16 9 C -0.14 -2.25 10.63 -39.40 -0.42 -2.66 16 10 C -0.05 -0.87 6.76 -36.80 -0.25 -1.12 16 11 C 0.58 13.39 7.64 -12.86 -0.10 13.29 16 12 O -0.52 -13.77 16.44 5.19 0.09 -13.68 16 13 N -0.59 -13.42 2.86 -184.52 -0.53 -13.95 16 14 C 0.08 1.47 9.57 59.85 0.57 2.04 16 15 C 0.24 6.55 5.14 -5.20 -0.03 6.52 16 16 C -0.53 -15.26 9.39 -34.44 -0.32 -15.58 16 17 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 20 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 O -0.14 -2.32 7.31 4.99 0.04 -2.28 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.41 7.12 -51.93 -0.37 0.04 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.23 7.96 -51.93 -0.41 -0.18 16 29 H 0.08 0.52 6.30 -51.93 -0.33 0.19 16 30 H 0.03 0.25 8.05 -51.93 -0.42 -0.17 16 31 H 0.08 0.82 5.49 -51.93 -0.29 0.53 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.36 6.72 -51.93 -0.35 0.02 16 35 H 0.10 0.85 6.90 -51.93 -0.36 0.49 16 36 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.15 1.43 7.94 -52.49 -0.42 1.01 16 38 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 41 H 0.07 1.13 5.50 -51.93 -0.29 0.85 16 42 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 43 H 0.05 1.40 7.40 -51.93 -0.38 1.02 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -33.04 359.80 -7.80 -40.84 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.95 Total: -2.69 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.56 Total: 1.32 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.82 Total: -45.96 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.12 Total: -15.97 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.04 -7.80 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592518992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.531 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds