Wall clock time and date at job start Tue Mar 31 2020 07:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47294 * 2 1 4 4 C 1.46906 * 111.00261 * 157.68765 * 3 2 1 5 5 C 1.52993 * 109.47323 * 287.99212 * 4 3 2 6 6 C 1.46902 * 111.00285 * 281.64782 * 3 2 1 7 7 C 1.50708 * 109.47105 * 169.99822 * 6 3 2 8 8 C 1.35127 * 125.61801 * 89.99830 * 7 6 3 9 9 C 1.40356 * 107.11789 * 180.02562 * 8 7 6 10 10 C 1.36542 * 106.70726 * 0.24509 * 9 8 7 11 11 C 1.46658 * 125.99087 * 179.74370 * 10 9 8 12 12 O 1.21698 * 119.99610 * 354.11026 * 11 10 9 13 13 N 1.34779 * 120.00235 * 174.11312 * 11 10 9 14 14 C 1.46499 * 119.99909 * 1.35003 * 13 11 10 15 15 C 1.46499 * 120.00013 * 181.35050 * 13 11 10 16 16 C 1.50697 * 109.47153 * 90.00149 * 15 13 11 17 17 H 1.08002 * 119.99901 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00258 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99665 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00185 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47221 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47253 * 119.99721 * 20 18 16 23 23 H 1.48497 * 109.47296 * 239.99621 * 20 18 16 24 24 O 1.33923 * 125.61298 * 270.02193 * 7 6 3 25 25 H 1.09000 * 109.46904 * 306.30823 * 1 2 3 26 26 H 1.08999 * 109.47038 * 66.30635 * 1 2 3 27 27 H 1.08993 * 109.47032 * 186.30781 * 1 2 3 28 28 H 1.09005 * 109.47253 * 240.00737 * 2 1 3 29 29 H 1.08997 * 109.47525 * 120.00645 * 2 1 3 30 30 H 1.08998 * 109.46451 * 47.99231 * 4 3 2 31 31 H 1.08998 * 109.47185 * 167.98916 * 4 3 2 32 32 H 1.08994 * 109.47185 * 185.69721 * 5 4 3 33 33 H 1.09006 * 109.47328 * 305.69413 * 5 4 3 34 34 H 1.09001 * 109.47514 * 65.69350 * 5 4 3 35 35 H 1.08995 * 109.47376 * 49.99988 * 6 3 2 36 36 H 1.09001 * 109.46959 * 289.99313 * 6 3 2 37 37 H 1.08001 * 126.44039 * 0.02562 * 8 7 6 38 38 H 1.07998 * 126.64770 * 179.97438 * 9 8 7 39 39 H 1.09003 * 109.46932 * 84.18624 * 14 13 11 40 40 H 1.08998 * 109.47361 * 204.18706 * 14 13 11 41 41 H 1.09002 * 109.47439 * 324.19016 * 14 13 11 42 42 H 1.08998 * 109.47340 * 209.99812 * 15 13 11 43 43 H 1.09003 * 109.47212 * 330.00107 * 15 13 11 44 44 H 0.97007 * 119.99688 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.3914 1.4584 0.5207 5 6 3.3772 1.2161 2.0312 6 6 1.9342 1.9736 -1.3432 7 6 2.2080 3.4534 -1.2615 8 6 3.4223 4.0362 -1.3702 9 6 3.2298 5.4200 -1.2361 10 6 1.8919 5.6135 -1.0444 11 6 1.2272 6.9063 -0.8498 12 8 1.8901 7.9212 -0.7430 13 7 -0.1177 6.9702 -0.7892 14 6 -0.9145 5.7448 -0.8880 15 6 -0.7828 8.2651 -0.6244 16 6 -1.0674 8.8596 -1.9796 17 1 -0.7811 8.3265 -2.8741 18 6 -1.6923 10.0847 -2.0775 19 7 -2.0405 10.7342 -0.9882 20 14 -2.0444 10.8220 -3.7573 21 1 -1.5568 9.9003 -4.8146 22 1 -3.5075 11.0241 -3.9124 23 1 -1.3486 12.1281 -3.8804 24 8 1.2879 4.4072 -1.0687 25 1 -0.3633 0.6085 0.8281 26 1 -0.3633 0.4130 -0.9410 27 1 -0.3633 -1.0214 0.1129 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 4.0049 0.6985 0.0366 31 1 3.8058 2.4453 0.3149 32 1 4.3785 1.3702 2.4333 33 1 2.6846 1.9123 2.5044 34 1 3.0583 0.1934 2.2323 35 1 0.9355 1.8108 -1.7484 36 1 2.6714 1.5031 -1.9937 37 1 4.3638 3.5319 -1.5303 38 1 3.9928 6.1835 -1.2726 39 1 -0.9842 5.2766 0.0939 40 1 -1.9146 5.9895 -1.2456 41 1 -0.4375 5.0565 -1.5857 42 1 -1.7195 8.1264 -0.0846 43 1 -0.1351 8.9372 -0.0615 44 1 -2.4806 11.5960 -1.0571 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592518992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:22 Heat of formation + Delta-G solvation = -32.887596 kcal Electronic energy + Delta-G solvation = -23989.705402 eV Core-core repulsion = 20522.385939 eV Total energy + Delta-G solvation = -3467.319463 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.75188 -40.45670 -39.00596 -36.83848 -34.81998 -34.10002 -32.67446 -32.63133 -30.45605 -29.29051 -27.61655 -26.69601 -25.05531 -23.89893 -22.83919 -22.35754 -21.32452 -20.85659 -18.76006 -18.48664 -17.62454 -17.41172 -17.17213 -16.43077 -16.31030 -15.89838 -15.63828 -15.35643 -14.84906 -14.67899 -14.36465 -14.32039 -14.21451 -14.07154 -13.84195 -13.46255 -13.13217 -13.08740 -13.06361 -12.84846 -12.68871 -12.52289 -12.40853 -12.38265 -12.24927 -11.81724 -11.73165 -11.52976 -11.17740 -10.96791 -10.67150 -9.76454 -9.46413 -9.24020 -8.25364 -6.40901 0.05202 1.31493 1.36521 1.38940 1.51026 1.60878 2.14747 2.31122 2.41357 2.99113 3.04313 3.47133 3.82018 3.93762 4.06386 4.13117 4.29859 4.33596 4.37414 4.43738 4.57282 4.61091 4.64927 4.65955 4.74250 4.76732 4.82421 4.88637 4.93145 5.02203 5.05840 5.15262 5.15953 5.17156 5.37104 5.42242 5.46669 5.47896 5.72292 5.92322 5.99719 6.06639 6.17032 6.53747 6.66532 7.10065 7.31247 8.82432 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.003354 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.965788 B = 8347.161115 C = 8722.915851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.554 5.554 4 C 0.040 3.960 5 C -0.144 4.144 6 C 0.132 3.868 7 C 0.025 3.975 8 C -0.208 4.208 9 C -0.127 4.127 10 C -0.089 4.089 11 C 0.578 3.422 12 O -0.575 6.575 13 N -0.597 5.597 14 C 0.084 3.916 15 C 0.258 3.742 16 C -0.548 4.548 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.972 3.028 21 H -0.268 1.268 22 H -0.266 1.266 23 H -0.279 1.279 24 O -0.152 6.152 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.185 0.815 38 H 0.157 0.843 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.031 0.969 43 H 0.005 0.995 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.896 -26.886 0.269 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.280 5.280 4 C -0.088 4.088 5 C -0.202 4.202 6 C 0.005 3.995 7 C -0.029 4.029 8 C -0.227 4.227 9 C -0.148 4.148 10 C -0.141 4.141 11 C 0.367 3.633 12 O -0.458 6.458 13 N -0.326 5.326 14 C -0.057 4.057 15 C 0.138 3.862 16 C -0.586 4.586 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.796 3.204 21 H -0.193 1.193 22 H -0.191 1.191 23 H -0.205 1.205 24 O -0.048 6.048 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.203 0.797 38 H 0.174 0.826 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.049 0.951 43 H 0.023 0.977 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.449 -25.986 0.759 27.336 hybrid contribution 0.308 0.757 -0.948 1.252 sum 8.757 -25.229 -0.189 26.706 Atomic orbital electron populations 1.21788 0.94854 1.02050 1.01919 1.22172 0.96231 0.86936 1.02139 1.61952 1.23652 1.20335 1.22102 1.22264 0.88226 1.01981 0.96281 1.21750 1.01841 1.01760 0.94854 1.20702 1.04744 0.82731 0.91335 1.23297 0.87310 0.91836 1.00411 1.21790 0.99473 0.92094 1.09354 1.22107 0.94103 0.98346 1.00203 1.21795 0.93262 0.83795 1.15274 1.17176 0.82392 0.86058 0.77664 1.90788 1.65418 1.35558 1.54028 1.48122 1.05382 1.10243 1.68842 1.21979 0.96447 0.84885 1.02428 1.18926 0.91476 0.79360 0.96487 1.21683 1.39164 1.04954 0.92808 0.92927 1.25878 0.94968 0.96818 1.01320 1.70058 1.41221 1.15459 1.29801 0.85305 0.78346 0.78058 0.78705 1.19256 1.19139 1.20478 1.84249 1.37037 1.14092 1.69437 0.93297 0.92881 0.90942 0.92868 0.89802 0.92816 0.91026 0.91430 0.93799 0.91898 0.87946 0.88620 0.79738 0.82564 0.91555 0.90294 0.89712 0.95075 0.97684 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.97 71.98 0.72 -1.07 16 2 C 0.05 0.58 5.56 86.30 0.48 1.06 16 3 N -0.55 -8.57 4.37 -900.79 -3.93 -12.50 16 4 C 0.04 0.55 5.54 86.30 0.48 1.03 16 5 C -0.14 -2.01 9.89 71.98 0.71 -1.30 16 6 C 0.13 2.00 5.31 85.56 0.45 2.46 16 7 C 0.02 0.57 6.27 24.97 0.16 0.72 16 8 C -0.21 -4.68 9.07 22.07 0.20 -4.48 16 9 C -0.13 -3.97 10.63 22.39 0.24 -3.73 16 10 C -0.09 -3.34 6.76 24.07 0.16 -3.18 16 11 C 0.58 27.79 7.64 86.44 0.66 28.46 16 12 O -0.58 -32.34 16.44 -4.34 -0.07 -32.41 16 13 N -0.60 -28.48 2.86 -855.91 -2.45 -30.92 16 14 C 0.08 3.06 9.57 127.77 1.22 4.28 16 15 C 0.26 14.66 5.14 85.63 0.44 15.10 16 16 C -0.55 -32.71 9.39 25.60 0.24 -32.47 16 17 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 18 C 0.01 0.56 5.46 84.65 0.46 1.02 16 19 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 20 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 O -0.15 -4.72 7.31 -5.05 -0.04 -4.75 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.65 7.12 -2.39 -0.02 0.63 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.44 7.96 -2.38 -0.02 0.42 16 29 H 0.08 0.84 6.30 -2.39 -0.02 0.82 16 30 H 0.05 0.55 8.05 -2.39 -0.02 0.53 16 31 H 0.07 1.17 5.49 -2.39 -0.01 1.16 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.06 0.72 6.72 -2.39 -0.02 0.71 16 35 H 0.10 1.46 6.90 -2.39 -0.02 1.44 16 36 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.19 2.73 7.94 -2.91 -0.02 2.71 16 38 H 0.16 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.08 2.81 8.03 -2.39 -0.02 2.79 16 41 H 0.08 2.79 5.50 -2.39 -0.01 2.77 16 42 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 43 H 0.01 0.32 7.40 -2.39 -0.02 0.31 16 44 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -75.21 359.80 3.43 -71.78 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.98 Total: 9.68 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.62 Total: 7.90 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -6.09 Total: -99.87 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.11 Total: -37.16 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.21 3.43 -71.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592518992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.889 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds