Wall clock time and date at job start Tue Mar 31 2020 07:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47462 * 2 1 4 4 C 1.50706 * 109.46830 * 240.00412 * 2 1 3 5 5 H 1.07998 * 119.99501 * 240.00068 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.99971 * 4 2 1 7 7 N 1.31514 * 120.00481 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99886 * 359.72901 * 6 4 2 9 9 H 1.48502 * 109.46964 * 270.27509 * 8 6 4 10 10 H 1.48505 * 109.47036 * 30.26897 * 8 6 4 11 11 H 1.48490 * 109.47395 * 150.27411 * 8 6 4 12 12 N 1.46500 * 109.46962 * 120.00472 * 2 1 3 13 13 C 1.34774 * 119.99776 * 274.99709 * 12 2 1 14 14 O 1.21280 * 120.00100 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99626 * 180.02562 * 13 12 2 16 16 H 1.09004 * 109.70992 * 60.00463 * 15 13 12 17 17 C 1.53059 * 109.70908 * 299.41165 * 15 13 12 18 18 C 1.50184 * 110.12946 * 191.72502 * 17 15 13 19 19 O 1.21273 * 118.24768 * 197.23606 * 18 17 15 20 20 N 1.33532 * 123.48313 * 17.18753 * 18 17 15 21 21 C 1.45459 * 123.68985 * 357.44183 * 20 18 17 22 22 H 1.08999 * 107.69881 * 262.15782 * 21 20 18 23 23 C 1.52475 * 111.03846 * 143.83500 * 21 20 18 24 24 C 1.52971 * 109.95697 * 294.60008 * 23 21 20 25 25 C 1.53070 * 109.15341 * 300.39465 * 24 23 21 26 26 C 1.52901 * 109.24893 * 60.92962 * 25 24 23 27 27 C 1.52696 * 110.79919 * 20.34413 * 21 20 18 28 28 H 1.08999 * 110.42417 * 187.70162 * 27 21 20 29 29 H 1.08994 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47175 * 300.00195 * 1 2 3 31 31 H 1.09001 * 109.47158 * 59.99494 * 1 2 3 32 32 H 0.96999 * 120.00235 * 179.72806 * 7 6 4 33 33 H 0.96997 * 120.00139 * 95.00080 * 12 2 1 34 34 H 1.09000 * 109.36352 * 311.90705 * 17 15 13 35 35 H 1.09006 * 109.35577 * 71.49989 * 17 15 13 36 36 H 0.96998 * 118.14831 * 177.46039 * 20 18 17 37 37 H 1.09006 * 109.38728 * 174.45381 * 23 21 20 38 38 H 1.08999 * 109.31138 * 54.70367 * 23 21 20 39 39 H 1.09000 * 109.52431 * 180.49257 * 24 23 21 40 40 H 1.09000 * 109.52597 * 60.29720 * 24 23 21 41 41 H 1.09007 * 109.50466 * 300.99912 * 25 24 23 42 42 H 1.09004 * 109.51028 * 180.86392 * 25 24 23 43 43 H 1.09001 * 109.42533 * 179.28004 * 26 25 24 44 44 H 1.09000 * 109.36635 * 59.43148 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 2.1379 -0.8589 -3.5567 8 14 0.6190 1.2751 -2.6541 9 1 -0.8072 0.8636 -2.6956 10 1 0.8409 2.1752 -1.4940 11 1 0.9646 1.9902 -3.9088 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6499 -0.7288 3.5873 16 1 3.6494 -1.1223 3.4019 17 6 1.7016 -1.8759 3.9449 18 6 2.0245 -2.4062 5.3123 19 8 1.5965 -3.4983 5.6202 20 7 2.7585 -1.7395 6.2067 21 6 3.3748 -0.4485 5.9432 22 1 4.4155 -0.6271 5.6727 23 6 3.3500 0.4338 7.1865 24 6 1.9056 0.7797 7.5525 25 6 1.2541 1.5195 6.3814 26 6 1.2515 0.6121 5.1508 27 6 2.6898 0.2501 4.7709 28 1 3.2381 1.1497 4.4912 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.9003 -0.5298 -4.4376 33 1 2.2490 -1.6318 1.1525 34 1 0.6740 -1.5126 3.9319 35 1 1.8094 -2.6755 3.2120 36 1 2.8882 -2.1388 7.0811 37 1 3.9033 1.3521 6.9896 38 1 3.8159 -0.0987 8.0157 39 1 1.8965 1.4174 8.4365 40 1 1.3522 -0.1367 7.7576 41 1 1.8191 2.4260 6.1641 42 1 0.2289 1.7824 6.6420 43 1 0.7766 1.1314 4.3185 44 1 0.6957 -0.2985 5.3744 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:24 Heat of formation + Delta-G solvation = -91.792509 kcal Electronic energy + Delta-G solvation = -25110.486600 eV Core-core repulsion = 21640.612828 eV Total energy + Delta-G solvation = -3469.873772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41622 -39.03684 -38.05724 -35.14675 -34.39485 -33.78452 -32.39436 -30.29813 -29.84236 -29.09382 -25.56853 -25.16463 -23.01509 -22.92578 -21.11415 -20.72384 -19.62757 -18.42095 -17.40831 -16.90809 -16.32054 -15.98742 -15.93123 -15.70903 -15.18512 -14.71611 -14.42265 -14.22334 -13.72180 -13.56342 -13.30682 -13.04568 -12.87996 -12.75958 -12.46962 -12.24961 -12.16186 -11.87683 -11.61285 -11.36463 -11.27064 -11.16886 -10.84598 -10.60919 -10.43466 -10.34321 -10.22429 -10.12340 -9.69508 -9.26298 -9.17273 -9.02589 -8.78556 -8.20641 -6.23170 -4.26104 2.54143 3.07214 3.15121 3.21619 3.33520 3.36886 3.75521 4.24365 4.29110 4.36556 4.51868 4.60242 4.75609 4.89158 4.89659 5.03052 5.11667 5.14967 5.27277 5.29878 5.31351 5.45882 5.50995 5.62063 5.68844 5.76155 5.81212 5.95603 6.00038 6.07962 6.27425 6.27935 6.30940 6.37833 6.53023 6.64674 6.81497 7.15083 7.19028 7.24208 7.48107 8.09768 8.10199 8.47966 8.72639 8.86066 9.37344 10.89000 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.004177 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.831414 B = 6701.790106 C = 7258.910128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.237 3.763 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.699 5.699 13 C 0.511 3.489 14 O -0.548 6.548 15 C -0.112 4.112 16 H 0.102 0.898 17 C -0.129 4.129 18 C 0.528 3.472 19 O -0.559 6.559 20 N -0.711 5.711 21 C 0.144 3.856 22 H 0.070 0.930 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.073 4.073 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.395 0.605 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.397 0.603 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 2.438 21.128 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.222 1.222 12 N -0.346 5.346 13 C 0.295 3.705 14 O -0.427 6.427 15 C -0.133 4.133 16 H 0.120 0.880 17 C -0.169 4.169 18 C 0.315 3.685 19 O -0.437 6.437 20 N -0.363 5.363 21 C 0.039 3.961 22 H 0.088 0.912 23 C -0.164 4.164 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.092 4.092 28 H 0.121 0.879 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.229 0.771 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.232 0.768 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.478 2.805 20.841 21.080 hybrid contribution -0.357 0.140 -0.054 0.387 sum 1.122 2.945 20.786 21.024 Atomic orbital electron populations 1.22452 0.99293 1.00899 0.99295 1.19108 0.90122 0.94649 0.82806 0.93335 1.21039 1.33375 1.14429 0.88555 0.90200 1.24832 0.95474 0.96688 0.95529 1.69867 1.44795 1.40139 0.98065 0.86870 0.80586 0.83549 0.77398 1.20318 1.18709 1.22189 1.46231 1.64739 1.13859 1.09788 1.20161 0.78594 0.87378 0.84349 1.90637 1.51221 1.15886 1.84998 1.21599 1.00923 0.96125 0.94701 0.88005 1.21689 1.01946 0.98823 0.94419 1.20057 0.77041 0.84439 0.86944 1.90761 1.52633 1.21080 1.79245 1.45528 1.52932 1.20847 1.16990 1.20761 0.96554 0.83029 0.95796 0.91208 1.21737 0.98001 0.99995 0.96654 1.21541 0.95492 1.00534 0.98177 1.21508 1.00646 0.98621 0.94690 1.21762 0.95635 0.99796 0.98796 1.21286 0.98215 0.98155 0.91589 0.87871 0.92780 0.94565 0.93478 0.92264 0.77127 0.87423 0.87458 0.76759 0.90021 0.91417 0.91963 0.91986 0.91653 0.92062 0.89389 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.96 37.16 0.33 -3.15 16 2 C 0.24 5.41 2.15 -69.08 -0.15 5.26 16 3 H 0.05 1.23 6.65 -51.93 -0.35 0.88 16 4 C -0.54 -14.15 9.31 -34.44 -0.32 -14.47 16 5 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 8 Si 0.89 21.43 24.37 -169.99 -4.14 17.28 16 9 H -0.28 -6.49 6.86 56.52 0.39 -6.10 16 10 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 N -0.70 -12.89 4.98 -54.93 -0.27 -13.16 16 13 C 0.51 8.52 6.82 -10.99 -0.07 8.45 16 14 O -0.55 -10.83 13.88 5.56 0.08 -10.75 16 15 C -0.11 -1.35 2.40 -91.41 -0.22 -1.57 16 16 H 0.10 1.09 8.12 -51.93 -0.42 0.67 16 17 C -0.13 -1.54 4.54 -28.10 -0.13 -1.66 16 18 C 0.53 6.59 6.84 -11.79 -0.08 6.51 16 19 O -0.56 -9.11 17.79 5.56 0.10 -9.01 16 20 N -0.71 -6.71 4.67 -55.37 -0.26 -6.97 16 21 C 0.14 1.18 2.89 -68.91 -0.20 0.98 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 23 C -0.13 -0.83 5.54 -27.01 -0.15 -0.98 16 24 C -0.12 -0.91 5.84 -26.71 -0.16 -1.06 16 25 C -0.12 -1.08 5.92 -26.75 -0.16 -1.24 16 26 C -0.12 -1.38 4.31 -26.73 -0.12 -1.50 16 27 C -0.07 -0.78 1.81 -90.39 -0.16 -0.94 16 28 H 0.10 1.17 7.87 -51.93 -0.41 0.76 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 1.06 3.25 -51.93 -0.17 0.89 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.40 6.50 8.28 -40.82 -0.34 6.16 16 34 H 0.11 1.33 6.77 -51.93 -0.35 0.98 16 35 H 0.11 1.24 7.96 -51.93 -0.41 0.82 16 36 H 0.40 3.31 8.68 -40.82 -0.35 2.96 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 41 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.24 6.29 -51.93 -0.33 0.91 16 44 H 0.06 0.66 5.45 -51.93 -0.28 0.38 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -32.03 331.54 -7.21 -39.24 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.80 Total: 7.03 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.68 Total: -3.30 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.24 Total: -45.48 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.18 Total: -19.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.03 -7.21 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.552 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds