Wall clock time and date at job start Tue Mar 31 2020 07:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47462 * 2 1 4 4 C 1.50706 * 109.46830 * 240.00412 * 2 1 3 5 5 H 1.07998 * 119.99501 * 240.00068 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.99971 * 4 2 1 7 7 N 1.31514 * 120.00481 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99886 * 359.72901 * 6 4 2 9 9 H 1.48502 * 109.46964 * 270.27509 * 8 6 4 10 10 H 1.48505 * 109.47036 * 30.26897 * 8 6 4 11 11 H 1.48490 * 109.47395 * 150.27411 * 8 6 4 12 12 N 1.46500 * 109.46962 * 120.00472 * 2 1 3 13 13 C 1.34774 * 119.99776 * 274.99709 * 12 2 1 14 14 O 1.21280 * 120.00100 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99626 * 180.02562 * 13 12 2 16 16 H 1.09004 * 109.70992 * 60.00463 * 15 13 12 17 17 C 1.53059 * 109.70908 * 299.41165 * 15 13 12 18 18 C 1.50184 * 110.12946 * 191.72502 * 17 15 13 19 19 O 1.21273 * 118.24768 * 197.23606 * 18 17 15 20 20 N 1.33532 * 123.48313 * 17.18753 * 18 17 15 21 21 C 1.45459 * 123.68985 * 357.44183 * 20 18 17 22 22 H 1.08999 * 107.69881 * 262.15782 * 21 20 18 23 23 C 1.52475 * 111.03846 * 143.83500 * 21 20 18 24 24 C 1.52971 * 109.95697 * 294.60008 * 23 21 20 25 25 C 1.53070 * 109.15341 * 300.39465 * 24 23 21 26 26 C 1.52901 * 109.24893 * 60.92962 * 25 24 23 27 27 C 1.52696 * 110.79919 * 20.34413 * 21 20 18 28 28 H 1.08999 * 110.42417 * 187.70162 * 27 21 20 29 29 H 1.08994 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47175 * 300.00195 * 1 2 3 31 31 H 1.09001 * 109.47158 * 59.99494 * 1 2 3 32 32 H 0.96999 * 120.00235 * 179.72806 * 7 6 4 33 33 H 0.96997 * 120.00139 * 95.00080 * 12 2 1 34 34 H 1.09000 * 109.36352 * 311.90705 * 17 15 13 35 35 H 1.09006 * 109.35577 * 71.49989 * 17 15 13 36 36 H 0.96998 * 118.14831 * 177.46039 * 20 18 17 37 37 H 1.09006 * 109.38728 * 174.45381 * 23 21 20 38 38 H 1.08999 * 109.31138 * 54.70367 * 23 21 20 39 39 H 1.09000 * 109.52431 * 180.49257 * 24 23 21 40 40 H 1.09000 * 109.52597 * 60.29720 * 24 23 21 41 41 H 1.09007 * 109.50466 * 300.99912 * 25 24 23 42 42 H 1.09004 * 109.51028 * 180.86392 * 25 24 23 43 43 H 1.09001 * 109.42533 * 179.28004 * 26 25 24 44 44 H 1.09000 * 109.36635 * 59.43148 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 2.1379 -0.8589 -3.5567 8 14 0.6190 1.2751 -2.6541 9 1 -0.8072 0.8636 -2.6956 10 1 0.8409 2.1752 -1.4940 11 1 0.9646 1.9902 -3.9088 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6499 -0.7288 3.5873 16 1 3.6494 -1.1223 3.4019 17 6 1.7016 -1.8759 3.9449 18 6 2.0245 -2.4062 5.3123 19 8 1.5965 -3.4983 5.6202 20 7 2.7585 -1.7395 6.2067 21 6 3.3748 -0.4485 5.9432 22 1 4.4155 -0.6271 5.6727 23 6 3.3500 0.4338 7.1865 24 6 1.9056 0.7797 7.5525 25 6 1.2541 1.5195 6.3814 26 6 1.2515 0.6121 5.1508 27 6 2.6898 0.2501 4.7709 28 1 3.2381 1.1497 4.4912 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.9003 -0.5298 -4.4376 33 1 2.2490 -1.6318 1.1525 34 1 0.6740 -1.5126 3.9319 35 1 1.8094 -2.6755 3.2120 36 1 2.8882 -2.1388 7.0811 37 1 3.9033 1.3521 6.9896 38 1 3.8159 -0.0987 8.0157 39 1 1.8965 1.4174 8.4365 40 1 1.3522 -0.1367 7.7576 41 1 1.8191 2.4260 6.1641 42 1 0.2289 1.7824 6.6420 43 1 0.7766 1.1314 4.3185 44 1 0.6957 -0.2985 5.3744 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:23 Heat of formation + Delta-G solvation = -115.421217 kcal Electronic energy + Delta-G solvation = -25111.511218 eV Core-core repulsion = 21640.612828 eV Total energy + Delta-G solvation = -3470.898390 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.37823 -40.38356 -39.02173 -36.84056 -35.34017 -34.73318 -34.32229 -31.78017 -30.72056 -30.09145 -27.22850 -26.56780 -24.03005 -23.71083 -22.55728 -21.64583 -21.08266 -19.32449 -19.01220 -18.04929 -17.52706 -17.51908 -17.01390 -16.66968 -16.35504 -16.05809 -15.80922 -15.09639 -14.99849 -14.89024 -14.52621 -14.43191 -14.13487 -14.07484 -13.64507 -13.51838 -13.23541 -13.16854 -12.88058 -12.76116 -12.50544 -12.27654 -12.13462 -11.91447 -11.61435 -11.42927 -11.28992 -11.27066 -11.19194 -11.13116 -10.86110 -10.37400 -9.97523 -9.83268 -8.37149 -6.43030 1.28375 1.36136 1.45207 1.55754 1.73977 2.26649 2.29369 2.41131 2.99357 3.37654 3.53461 3.60057 3.67375 3.96282 4.04551 4.09205 4.22052 4.33577 4.39450 4.47592 4.48297 4.52917 4.58066 4.65115 4.68177 4.73710 4.81700 4.98742 4.99791 5.03704 5.15235 5.23622 5.25603 5.33296 5.35971 5.42743 5.46961 5.52987 5.67375 5.86994 6.14299 6.30683 6.59393 6.88651 7.18837 7.20358 7.45575 8.78163 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.004177 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.831414 B = 6701.790106 C = 7258.910128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H 0.026 0.974 4 C -0.533 4.533 5 H 0.056 0.944 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.940 3.060 9 H -0.263 1.263 10 H -0.260 1.260 11 H -0.294 1.294 12 N -0.701 5.701 13 C 0.512 3.488 14 O -0.577 6.577 15 C -0.099 4.099 16 H 0.124 0.876 17 C -0.126 4.126 18 C 0.531 3.469 19 O -0.601 6.601 20 N -0.695 5.695 21 C 0.146 3.854 22 H 0.092 0.908 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.072 4.072 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.270 0.730 33 H 0.405 0.595 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.406 0.594 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 3.091 23.525 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.138 3.862 3 H 0.044 0.956 4 C -0.571 4.571 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.767 3.233 9 H -0.188 1.188 10 H -0.184 1.184 11 H -0.221 1.221 12 N -0.350 5.350 13 C 0.299 3.701 14 O -0.457 6.457 15 C -0.120 4.120 16 H 0.142 0.858 17 C -0.166 4.166 18 C 0.319 3.681 19 O -0.483 6.483 20 N -0.346 5.346 21 C 0.042 3.958 22 H 0.110 0.890 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.091 4.091 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.240 0.760 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.243 0.757 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.020 3.471 23.286 23.630 hybrid contribution -0.474 -0.048 -0.766 0.902 sum 1.546 3.422 22.520 22.831 Atomic orbital electron populations 1.22349 0.98028 1.01556 0.99429 1.18738 0.91010 0.93268 0.83212 0.95607 1.21282 1.32287 1.13507 0.90015 0.92591 1.25560 0.96853 0.99323 0.95379 1.69979 1.46698 1.42031 0.98668 0.85994 0.79666 0.80392 0.77215 1.18840 1.18443 1.22130 1.46088 1.65305 1.14331 1.09280 1.20875 0.77386 0.87055 0.84808 1.90629 1.52166 1.17434 1.85510 1.21566 1.01606 0.96090 0.92781 0.85828 1.21632 1.01545 0.98699 0.94682 1.19992 0.77010 0.83933 0.87172 1.90749 1.54636 1.22936 1.79967 1.45456 1.51489 1.20913 1.16784 1.20885 0.96882 0.82297 0.95730 0.89021 1.21759 0.97519 1.00355 0.96277 1.21518 0.95903 1.00183 0.97799 1.21501 1.00922 0.98443 0.94505 1.21675 0.95823 0.99580 0.98643 1.21304 0.97990 0.97905 0.91922 0.88166 0.91885 0.93392 0.94268 0.92113 0.75965 0.88077 0.87129 0.75659 0.88764 0.89151 0.90423 0.92757 0.91506 0.92353 0.92623 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.58 8.96 71.98 0.64 -5.93 16 2 C 0.24 11.08 2.15 44.25 0.10 11.17 16 3 H 0.03 1.31 6.65 -2.39 -0.02 1.30 16 4 C -0.53 -28.46 9.31 25.60 0.24 -28.23 16 5 H 0.06 3.19 7.98 -2.91 -0.02 3.17 16 6 C 0.03 1.59 5.45 84.65 0.46 2.05 16 7 N -0.93 -55.66 13.96 21.45 0.30 -55.37 16 8 Si 0.94 44.18 24.37 68.60 1.67 45.85 16 9 H -0.26 -11.68 6.86 99.48 0.68 -11.00 16 10 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 N -0.70 -25.61 4.98 -446.09 -2.22 -27.83 16 13 C 0.51 16.73 6.82 87.66 0.60 17.32 16 14 O -0.58 -22.63 13.88 -3.03 -0.04 -22.67 16 15 C -0.10 -2.23 2.40 -11.30 -0.03 -2.25 16 16 H 0.12 2.30 8.12 -2.38 -0.02 2.29 16 17 C -0.13 -2.85 4.54 29.71 0.13 -2.72 16 18 C 0.53 12.42 6.84 87.69 0.60 13.02 16 19 O -0.60 -19.08 17.79 -3.01 -0.05 -19.13 16 20 N -0.70 -11.22 4.67 -448.18 -2.09 -13.31 16 21 C 0.15 1.90 2.89 44.91 0.13 2.03 16 22 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 23 C -0.12 -1.10 5.54 30.41 0.17 -0.94 16 24 C -0.12 -1.41 5.84 30.61 0.18 -1.23 16 25 C -0.12 -1.95 5.92 30.58 0.18 -1.77 16 26 C -0.12 -2.59 4.31 30.60 0.13 -2.46 16 27 C -0.07 -1.38 1.81 -10.64 -0.02 -1.40 16 28 H 0.10 2.06 7.87 -2.39 -0.02 2.04 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.71 3.25 -2.39 -0.01 1.70 16 32 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.41 13.15 8.28 -92.71 -0.77 12.39 16 34 H 0.10 2.46 6.77 -2.39 -0.02 2.44 16 35 H 0.11 2.44 7.96 -2.38 -0.02 2.42 16 36 H 0.41 5.53 8.68 -92.71 -0.80 4.72 16 37 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.76 7.87 -2.39 -0.02 0.74 16 41 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.57 6.29 -2.39 -0.02 1.56 16 44 H 0.05 1.15 5.45 -2.39 -0.01 1.14 16 Total: -1.00 -70.11 331.54 0.45 -69.65 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.63 Total: 24.14 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 3.52 Total: -1.33 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -4.01 Total: -96.51 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.10 Total: -41.80 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -70.11 0.45 -69.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.768 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds