Wall clock time and date at job start Tue Mar 31 2020 07:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.50696 * 109.47044 * 239.99937 * 2 1 3 5 5 H 1.08010 * 120.00418 * 240.00538 * 4 2 1 6 6 C 1.37879 * 120.00004 * 60.00023 * 4 2 1 7 7 N 1.31517 * 119.99921 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00088 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47587 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47479 * 120.00439 * 8 6 4 11 11 H 1.48506 * 109.47399 * 240.00010 * 8 6 4 12 12 N 1.46504 * 109.47140 * 120.00287 * 2 1 3 13 13 C 1.34773 * 119.99805 * 274.99678 * 12 2 1 14 14 O 1.21283 * 120.00301 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00033 * 179.97438 * 13 12 2 16 16 H 1.09010 * 109.70635 * 322.88885 * 15 13 12 17 17 C 1.53061 * 109.71237 * 202.26050 * 15 13 12 18 18 C 1.50164 * 110.12896 * 288.94432 * 17 15 13 19 19 O 1.21286 * 118.26117 * 162.80796 * 18 17 15 20 20 N 1.33974 * 123.57152 * 342.06289 * 18 17 15 21 21 C 1.45470 * 123.35375 * 3.97979 * 20 18 17 22 22 H 1.08997 * 108.23692 * 96.90455 * 21 20 18 23 23 C 1.52477 * 110.53060 * 215.27487 * 21 20 18 24 24 C 1.51777 * 110.59561 * 65.63069 * 23 21 20 25 25 C 1.53075 * 109.31776 * 59.09323 * 24 23 21 26 26 C 1.52908 * 109.24837 * 299.38651 * 25 24 23 27 27 C 1.52704 * 110.78461 * 338.38960 * 21 20 18 28 28 H 1.08999 * 109.95397 * 172.66699 * 27 21 20 29 29 H 1.09003 * 109.47165 * 300.00092 * 1 2 3 30 30 H 1.08997 * 109.47059 * 59.99721 * 1 2 3 31 31 H 1.08994 * 109.47460 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00003 * 180.02562 * 7 6 4 33 33 H 0.96999 * 119.99909 * 94.99165 * 12 2 1 34 34 H 1.08996 * 109.36367 * 49.14651 * 17 15 13 35 35 H 1.09007 * 109.36189 * 168.74599 * 17 15 13 36 36 H 0.96998 * 118.48375 * 182.68436 * 20 18 17 37 37 H 1.08996 * 109.38900 * 185.13693 * 23 21 20 38 38 H 1.09001 * 109.38735 * 304.84012 * 23 21 20 39 39 H 1.08996 * 109.18822 * 299.29476 * 24 23 21 40 40 H 1.09004 * 109.75143 * 179.22786 * 24 23 21 41 41 H 1.09001 * 109.50973 * 179.45535 * 25 24 23 42 42 H 1.09001 * 109.50911 * 59.31818 * 25 24 23 43 43 H 1.09001 * 109.42105 * 300.51748 * 26 25 24 44 44 H 1.09004 * 109.36275 * 180.67996 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0079 9 1 3.1453 -2.2878 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1874 -4.8166 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6489 -0.7289 3.5877 16 1 2.2567 -1.7457 3.6106 17 6 2.1988 0.0272 4.8401 18 6 2.9547 1.3189 4.9634 19 8 2.5128 2.1747 5.7005 20 7 4.0990 1.5725 4.3144 21 6 4.6931 0.6566 3.3531 22 1 4.3971 0.9727 2.3528 23 6 6.2148 0.7054 3.4380 24 6 6.6917 0.1807 4.7800 25 6 6.2103 -1.2612 4.9601 26 6 4.6820 -1.2905 4.9243 27 6 4.1849 -0.7662 3.5745 28 1 4.5345 -1.4153 2.7717 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.7089 1.1614 -3.4844 33 1 2.2489 -1.6319 1.1526 34 1 1.1317 0.2382 4.7708 35 1 2.3873 -0.5872 5.7205 36 1 4.5465 2.4172 4.4788 37 1 6.6412 0.0833 2.6511 38 1 6.5517 1.7337 3.3069 39 1 6.2812 0.8037 5.5746 40 1 7.7806 0.2089 4.8206 41 1 6.5594 -1.6444 5.9189 42 1 6.6052 -1.8801 4.1544 43 1 4.2886 -0.6629 5.7240 44 1 4.3368 -2.3149 5.0645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:29 Heat of formation + Delta-G solvation = -99.229862 kcal Electronic energy + Delta-G solvation = -25414.294691 eV Core-core repulsion = 21944.098412 eV Total energy + Delta-G solvation = -3470.196280 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31004 -38.53234 -37.88995 -34.96509 -34.03714 -33.70803 -32.37244 -29.99299 -29.30637 -28.89047 -25.38040 -25.12983 -22.93546 -22.49996 -21.31628 -20.48327 -19.55884 -18.39649 -17.10899 -16.55709 -16.09841 -15.92177 -15.70529 -15.24113 -15.04323 -14.34554 -14.27092 -14.17747 -13.65395 -13.34163 -13.13826 -13.01370 -12.50733 -12.47113 -12.29921 -12.15063 -11.69212 -11.64401 -11.34531 -11.13977 -11.09113 -10.98365 -10.78393 -10.66122 -10.56051 -10.34207 -10.30192 -10.27575 -9.49919 -9.08200 -8.99159 -8.74009 -8.59030 -7.95375 -6.15949 -4.25659 2.96807 3.20224 3.24939 3.28599 3.30496 3.53092 3.95431 4.31320 4.40600 4.47033 4.51586 4.80333 4.83006 4.96661 5.08007 5.09302 5.16565 5.25728 5.27157 5.38768 5.47620 5.53125 5.65681 5.70302 5.76464 5.85782 5.86605 5.95036 6.02143 6.03571 6.15330 6.21621 6.79463 6.93966 7.03035 7.12290 7.41815 7.51894 7.59976 7.65397 7.87558 8.11690 8.50445 8.61485 8.74086 9.07553 9.42262 10.89934 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.004698 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.580314 B = 5958.782294 C = 6660.349676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.501 3.499 14 O -0.544 6.544 15 C -0.114 4.114 16 H 0.101 0.899 17 C -0.115 4.115 18 C 0.543 3.457 19 O -0.568 6.568 20 N -0.704 5.704 21 C 0.143 3.857 22 H 0.076 0.924 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.083 4.083 28 H 0.098 0.902 29 H 0.014 0.986 30 H 0.089 0.911 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.395 0.605 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.413 -7.081 13.136 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.353 5.353 13 C 0.285 3.715 14 O -0.422 6.422 15 C -0.136 4.136 16 H 0.119 0.881 17 C -0.156 4.156 18 C 0.331 3.669 19 O -0.448 6.448 20 N -0.356 5.356 21 C 0.037 3.963 22 H 0.094 0.906 23 C -0.165 4.165 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.102 4.102 28 H 0.116 0.884 29 H 0.033 0.967 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.231 0.769 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.758 -5.881 13.325 17.532 hybrid contribution 0.505 -0.653 -1.115 1.387 sum 10.262 -6.534 12.211 17.237 Atomic orbital electron populations 1.22072 0.98510 0.99065 1.00914 1.18731 0.91003 0.93911 0.80027 0.93482 1.21235 1.32452 1.13179 0.90292 0.92054 1.24895 0.94809 0.94933 0.99087 1.69916 1.35834 1.22429 1.23804 0.86410 0.78622 0.79505 0.82637 1.19742 1.20876 1.20891 1.46540 1.64826 1.13464 1.10512 1.20230 0.78953 0.87653 0.84665 1.90717 1.50796 1.15825 1.84874 1.21645 0.96477 1.01169 0.94328 0.88068 1.21472 1.02005 0.94136 0.97939 1.19873 0.79831 0.88945 0.78243 1.90703 1.66843 1.46988 1.40224 1.45354 1.24837 1.21425 1.43949 1.20673 0.92780 0.89459 0.93347 0.90637 1.21531 0.94243 1.02178 0.98589 1.21317 1.00225 0.96547 0.97613 1.21518 0.95368 0.96827 1.01792 1.21675 0.95925 1.01279 0.96581 1.21417 0.92957 0.96235 0.99572 0.88405 0.96682 0.89201 0.95498 0.92606 0.77981 0.87956 0.87992 0.76939 0.90296 0.91243 0.91882 0.91873 0.91918 0.91659 0.91500 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.51 2.56 -69.08 -0.18 6.33 16 3 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.53 -13.62 8.73 -34.44 -0.30 -13.92 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.54 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.12 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.71 -13.64 5.07 -54.93 -0.28 -13.92 16 13 C 0.50 9.20 5.49 -10.99 -0.06 9.14 16 14 O -0.54 -12.45 14.27 5.56 0.08 -12.38 16 15 C -0.11 -1.47 2.71 -91.40 -0.25 -1.72 16 16 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 17 C -0.12 -1.58 4.53 -28.11 -0.13 -1.71 16 18 C 0.54 8.99 5.56 -11.60 -0.06 8.92 16 19 O -0.57 -11.57 17.80 5.55 0.10 -11.48 16 20 N -0.70 -9.98 4.53 -55.26 -0.25 -10.23 16 21 C 0.14 1.78 2.36 -68.90 -0.16 1.62 16 22 H 0.08 1.20 6.94 -51.93 -0.36 0.84 16 23 C -0.13 -1.22 5.43 -27.62 -0.15 -1.37 16 24 C -0.12 -0.99 5.81 -27.31 -0.16 -1.15 16 25 C -0.12 -0.90 5.93 -26.74 -0.16 -1.06 16 26 C -0.12 -1.01 4.58 -26.73 -0.12 -1.13 16 27 C -0.08 -0.89 2.32 -90.38 -0.21 -1.10 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.37 8.54 -40.82 -0.35 6.02 16 34 H 0.10 1.56 8.09 -51.93 -0.42 1.13 16 35 H 0.10 1.07 6.85 -51.93 -0.36 0.72 16 36 H 0.40 5.31 8.68 -40.82 -0.35 4.95 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.65 5.52 -51.93 -0.29 0.36 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -32.63 338.02 -8.35 -40.98 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.01 Total: 9.50 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.69 Total: 1.22 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.10 Total: -48.07 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.18 Total: -23.85 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.63 -8.35 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.252 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds