Wall clock time and date at job start Tue Mar 31 2020 07:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.50696 * 109.47044 * 239.99937 * 2 1 3 5 5 H 1.08010 * 120.00418 * 240.00538 * 4 2 1 6 6 C 1.37879 * 120.00004 * 60.00023 * 4 2 1 7 7 N 1.31517 * 119.99921 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00088 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47587 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47479 * 120.00439 * 8 6 4 11 11 H 1.48506 * 109.47399 * 240.00010 * 8 6 4 12 12 N 1.46504 * 109.47140 * 120.00287 * 2 1 3 13 13 C 1.34773 * 119.99805 * 274.99678 * 12 2 1 14 14 O 1.21283 * 120.00301 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00033 * 179.97438 * 13 12 2 16 16 H 1.09010 * 109.70635 * 322.88885 * 15 13 12 17 17 C 1.53061 * 109.71237 * 202.26050 * 15 13 12 18 18 C 1.50164 * 110.12896 * 288.94432 * 17 15 13 19 19 O 1.21286 * 118.26117 * 162.80796 * 18 17 15 20 20 N 1.33974 * 123.57152 * 342.06289 * 18 17 15 21 21 C 1.45470 * 123.35375 * 3.97979 * 20 18 17 22 22 H 1.08997 * 108.23692 * 96.90455 * 21 20 18 23 23 C 1.52477 * 110.53060 * 215.27487 * 21 20 18 24 24 C 1.51777 * 110.59561 * 65.63069 * 23 21 20 25 25 C 1.53075 * 109.31776 * 59.09323 * 24 23 21 26 26 C 1.52908 * 109.24837 * 299.38651 * 25 24 23 27 27 C 1.52704 * 110.78461 * 338.38960 * 21 20 18 28 28 H 1.08999 * 109.95397 * 172.66699 * 27 21 20 29 29 H 1.09003 * 109.47165 * 300.00092 * 1 2 3 30 30 H 1.08997 * 109.47059 * 59.99721 * 1 2 3 31 31 H 1.08994 * 109.47460 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00003 * 180.02562 * 7 6 4 33 33 H 0.96999 * 119.99909 * 94.99165 * 12 2 1 34 34 H 1.08996 * 109.36367 * 49.14651 * 17 15 13 35 35 H 1.09007 * 109.36189 * 168.74599 * 17 15 13 36 36 H 0.96998 * 118.48375 * 182.68436 * 20 18 17 37 37 H 1.08996 * 109.38900 * 185.13693 * 23 21 20 38 38 H 1.09001 * 109.38735 * 304.84012 * 23 21 20 39 39 H 1.08996 * 109.18822 * 299.29476 * 24 23 21 40 40 H 1.09004 * 109.75143 * 179.22786 * 24 23 21 41 41 H 1.09001 * 109.50973 * 179.45535 * 25 24 23 42 42 H 1.09001 * 109.50911 * 59.31818 * 25 24 23 43 43 H 1.09001 * 109.42105 * 300.51748 * 26 25 24 44 44 H 1.09004 * 109.36275 * 180.67996 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0079 9 1 3.1453 -2.2878 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1874 -4.8166 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6489 -0.7289 3.5877 16 1 2.2567 -1.7457 3.6106 17 6 2.1988 0.0272 4.8401 18 6 2.9547 1.3189 4.9634 19 8 2.5128 2.1747 5.7005 20 7 4.0990 1.5725 4.3144 21 6 4.6931 0.6566 3.3531 22 1 4.3971 0.9727 2.3528 23 6 6.2148 0.7054 3.4380 24 6 6.6917 0.1807 4.7800 25 6 6.2103 -1.2612 4.9601 26 6 4.6820 -1.2905 4.9243 27 6 4.1849 -0.7662 3.5745 28 1 4.5345 -1.4153 2.7717 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.7089 1.1614 -3.4844 33 1 2.2489 -1.6319 1.1526 34 1 1.1317 0.2382 4.7708 35 1 2.3873 -0.5872 5.7205 36 1 4.5465 2.4172 4.4788 37 1 6.6412 0.0833 2.6511 38 1 6.5517 1.7337 3.3069 39 1 6.2812 0.8037 5.5746 40 1 7.7806 0.2089 4.8206 41 1 6.5594 -1.6444 5.9189 42 1 6.6052 -1.8801 4.1544 43 1 4.2886 -0.6629 5.7240 44 1 4.3368 -2.3149 5.0645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:28 Heat of formation + Delta-G solvation = -123.055900 kcal Electronic energy + Delta-G solvation = -25415.327866 eV Core-core repulsion = 21944.098412 eV Total energy + Delta-G solvation = -3471.229454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.44480 -40.06264 -39.01374 -36.74886 -35.14946 -34.78791 -34.22547 -31.18000 -30.46274 -30.25092 -27.35043 -26.39788 -23.85284 -23.46221 -22.87321 -21.67648 -21.00488 -19.62664 -18.57933 -17.84936 -17.50893 -17.10796 -17.07333 -16.76031 -16.30726 -15.93400 -15.43941 -15.11132 -14.87241 -14.69971 -14.42896 -14.27489 -13.96109 -13.76587 -13.32983 -13.23936 -13.13644 -12.96215 -12.83365 -12.71386 -12.55684 -12.34707 -12.27670 -12.09913 -11.89823 -11.45575 -11.36351 -11.15016 -11.07971 -10.70510 -10.64515 -10.48442 -9.94427 -9.71285 -8.16511 -6.34027 1.45238 1.46492 1.58224 1.68296 1.82649 2.34378 2.39822 2.62499 3.14574 3.48204 3.50770 3.59505 3.71433 4.01851 4.08194 4.15702 4.24355 4.39224 4.47859 4.51638 4.61938 4.66837 4.72289 4.75982 4.78924 4.90431 4.92871 5.00618 5.10896 5.15616 5.23768 5.28976 5.35709 5.41289 5.45325 5.57425 5.63338 5.70037 5.86161 5.92111 6.11019 6.41274 6.75350 7.00296 7.24898 7.34570 7.61245 8.89982 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.004698 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.580314 B = 5958.782294 C = 6660.349676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H -0.008 1.008 4 C -0.539 4.539 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.255 1.255 10 H -0.282 1.282 11 H -0.287 1.287 12 N -0.699 5.699 13 C 0.498 3.502 14 O -0.596 6.596 15 C -0.100 4.100 16 H 0.146 0.854 17 C -0.113 4.113 18 C 0.532 3.468 19 O -0.618 6.618 20 N -0.699 5.699 21 C 0.140 3.860 22 H 0.033 0.967 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.078 4.078 28 H 0.116 0.884 29 H 0.007 0.993 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.407 0.593 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.394 0.606 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.390 -10.855 13.764 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.010 0.990 4 C -0.578 4.578 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.797 3.203 9 H -0.178 1.178 10 H -0.208 1.208 11 H -0.213 1.213 12 N -0.348 5.348 13 C 0.285 3.715 14 O -0.478 6.478 15 C -0.122 4.122 16 H 0.163 0.837 17 C -0.153 4.153 18 C 0.322 3.678 19 O -0.502 6.502 20 N -0.348 5.348 21 C 0.035 3.965 22 H 0.051 0.949 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.149 4.149 27 C -0.097 4.097 28 H 0.134 0.866 29 H 0.026 0.974 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.102 0.898 35 H 0.162 0.838 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.778 -9.718 13.958 20.688 hybrid contribution -0.103 0.625 -1.316 1.461 sum 11.675 -9.093 12.642 19.463 Atomic orbital electron populations 1.21900 0.98753 0.99437 0.99203 1.18259 0.90752 0.91736 0.82309 0.98962 1.21577 1.32248 1.13420 0.90520 0.90354 1.25830 0.94936 0.95551 1.02491 1.70082 1.37295 1.24174 1.24423 0.85301 0.78028 0.78609 0.78411 1.17802 1.20773 1.21282 1.46228 1.64893 1.14202 1.09491 1.21226 0.77417 0.87129 0.85722 1.90703 1.52763 1.18527 1.85765 1.21665 0.98091 1.02144 0.90274 0.83661 1.21540 1.00368 0.93347 1.00062 1.20509 0.80076 0.89632 0.77618 1.90669 1.68146 1.48766 1.42595 1.45429 1.24278 1.21766 1.43284 1.20799 0.94816 0.90337 0.90564 0.94916 1.21500 0.91793 1.02544 1.00161 1.21310 1.01095 0.97110 0.95897 1.21532 0.94488 0.96114 1.03111 1.21674 0.96685 1.02438 0.94090 1.21521 0.90985 0.95108 1.02072 0.86563 0.97415 0.91874 0.93836 0.92739 0.75756 0.89797 0.83819 0.77104 0.89087 0.91618 0.93129 0.90363 0.90467 0.90408 0.92604 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.27 13.74 2.56 44.24 0.11 13.86 16 3 H -0.01 -0.46 7.58 -2.39 -0.02 -0.48 16 4 C -0.54 -27.37 8.73 25.60 0.22 -27.14 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.43 16 8 Si 0.97 40.85 29.54 68.60 2.03 42.88 16 9 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 12 N -0.70 -26.59 5.07 -446.11 -2.26 -28.85 16 13 C 0.50 18.23 5.49 87.66 0.48 18.72 16 14 O -0.60 -28.60 14.27 -3.04 -0.04 -28.65 16 15 C -0.10 -2.33 2.71 -11.30 -0.03 -2.36 16 16 H 0.15 2.20 8.14 -2.38 -0.02 2.18 16 17 C -0.11 -2.95 4.53 29.70 0.13 -2.82 16 18 C 0.53 17.88 5.56 87.61 0.49 18.37 16 19 O -0.62 -26.20 17.80 -3.05 -0.05 -26.25 16 20 N -0.70 -20.24 4.53 -447.57 -2.03 -22.27 16 21 C 0.14 3.42 2.36 44.91 0.11 3.52 16 22 H 0.03 1.09 6.94 -2.39 -0.02 1.07 16 23 C -0.12 -2.15 5.43 30.02 0.16 -1.99 16 24 C -0.12 -1.62 5.81 30.22 0.18 -1.44 16 25 C -0.12 -1.26 5.93 30.59 0.18 -1.08 16 26 C -0.11 -1.43 4.58 30.60 0.14 -1.29 16 27 C -0.08 -1.45 2.32 -10.64 -0.02 -1.47 16 28 H 0.12 1.81 8.14 -2.39 -0.02 1.80 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 3.53 6.07 -2.39 -0.01 3.52 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.41 12.32 8.54 -92.71 -0.79 11.53 16 34 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 35 H 0.14 2.53 6.85 -2.38 -0.02 2.52 16 36 H 0.39 11.18 8.68 -92.71 -0.80 10.37 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 0.84 7.87 -2.39 -0.02 0.82 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.88 5.52 -2.39 -0.01 0.86 16 44 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -76.27 338.02 0.57 -75.70 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.58 Total: 30.06 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 3.27 Total: 9.82 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.04 Total: -103.55 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -0.10 Total: -54.90 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -76.27 0.57 -75.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.359 kcal (2) G-P(sol) polarization free energy of solvation -76.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds