Wall clock time and date at job start Tue Mar 31 2020 07:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47143 * 2 1 4 4 C 1.46764 * 124.35052 * 269.94834 * 3 2 1 5 5 C 1.54480 * 105.47178 * 197.03873 * 4 3 2 6 6 H 1.09001 * 111.00126 * 92.72235 * 5 4 3 7 7 C 1.50703 * 110.96576 * 216.46480 * 5 4 3 8 8 O 1.21285 * 120.00229 * 353.83526 * 7 5 4 9 9 N 1.34775 * 119.99747 * 173.83428 * 7 5 4 10 10 C 1.46924 * 120.63061 * 359.97438 * 9 7 5 11 11 C 1.53190 * 108.77327 * 126.39625 * 10 9 7 12 12 C 1.53041 * 109.31835 * 54.63417 * 11 10 9 13 13 C 1.53038 * 109.53690 * 298.63807 * 12 11 10 14 14 H 1.08998 * 109.49755 * 301.37869 * 13 12 11 15 15 C 1.50696 * 109.50213 * 181.31252 * 13 12 11 16 16 H 1.07999 * 120.00319 * 240.00335 * 15 13 12 17 17 C 1.37885 * 119.99717 * 59.99718 * 15 13 12 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.46930 * 120.62826 * 180.02562 * 9 7 5 24 24 C 1.54626 * 101.76381 * 334.58393 * 5 4 3 25 25 C 1.34419 * 124.34826 * 89.97416 * 3 2 1 26 26 O 1.21284 * 124.94243 * 359.53479 * 25 3 2 27 27 H 1.08991 * 109.47111 * 300.00099 * 1 2 3 28 28 H 1.09006 * 109.46523 * 60.00111 * 1 2 3 29 29 H 1.08996 * 109.46774 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47194 * 239.99523 * 2 1 3 31 31 H 1.08997 * 109.47036 * 120.00183 * 2 1 3 32 32 H 1.08997 * 110.24314 * 78.03965 * 4 3 2 33 33 H 1.08997 * 110.24506 * 316.03787 * 4 3 2 34 34 H 1.08994 * 109.59106 * 6.60806 * 10 9 7 35 35 H 1.09004 * 109.58803 * 246.18011 * 10 9 7 36 36 H 1.09006 * 109.49955 * 294.68034 * 11 10 9 37 37 H 1.09004 * 109.50071 * 174.58732 * 11 10 9 38 38 H 1.08996 * 109.46534 * 178.61858 * 12 11 10 39 39 H 1.08998 * 109.45600 * 58.65553 * 12 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.58702 * 113.82038 * 23 9 7 42 42 H 1.08996 * 109.59054 * 353.38839 * 23 9 7 43 43 H 1.09005 * 110.48567 * 143.47818 * 24 5 4 44 44 H 1.09004 * 110.48529 * 266.11922 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2955 2.1616 -1.2117 5 6 3.1756 3.3436 -0.7483 6 1 4.2345 3.1030 -0.8437 7 6 2.8395 4.5982 -1.5125 8 8 2.0548 4.5538 -2.4362 9 7 3.4108 5.7697 -1.1693 10 6 4.3627 5.8394 -0.0523 11 6 5.6561 6.4945 -0.5470 12 6 5.3280 7.8493 -1.1787 13 6 4.4011 7.6433 -2.3790 14 1 4.8855 6.9901 -3.1048 15 6 4.1044 8.9745 -3.0198 16 1 3.0857 9.3271 -3.0856 17 6 5.1336 9.7425 -3.5221 18 7 4.8747 10.9045 -4.0809 19 14 6.8955 9.1323 -3.4088 20 1 7.5002 9.5993 -2.1354 21 1 6.9087 7.6479 -3.4480 22 1 7.6782 9.6647 -4.5530 23 6 3.0927 7.0014 -1.9045 24 6 2.7697 3.4752 0.7379 25 6 2.2707 2.0964 1.1098 26 8 2.1197 1.6949 2.2442 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3652 2.5306 -1.6435 33 1 2.8338 1.5524 -1.9378 34 1 4.5774 4.8335 0.3083 35 1 3.9364 6.4358 0.7544 36 1 6.1286 5.8517 -1.2898 37 1 6.3349 6.6399 0.2934 38 1 6.2493 8.3285 -1.5095 39 1 4.8333 8.4829 -0.4425 40 1 5.5988 11.4449 -4.4339 41 1 2.5632 7.6921 -1.2483 42 1 2.4693 6.7622 -2.7660 43 1 3.6326 3.7457 1.3465 44 1 1.9748 4.2123 0.8524 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597916173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:27 Heat of formation + Delta-G solvation = -67.171490 kcal Electronic energy + Delta-G solvation = -24588.020377 eV Core-core repulsion = 21119.214253 eV Total energy + Delta-G solvation = -3468.806124 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09790 -39.52602 -37.29678 -36.39342 -34.39802 -33.41609 -31.84907 -30.82662 -29.78973 -27.95306 -25.70859 -25.13175 -23.80895 -22.62917 -21.75830 -20.05792 -19.54300 -18.69078 -17.49738 -16.98350 -16.77885 -16.23213 -15.67067 -15.14840 -15.05489 -14.66990 -14.21058 -13.97967 -13.83487 -13.62074 -13.60080 -13.41405 -13.11157 -12.66814 -12.59280 -12.43681 -12.32403 -12.24859 -11.80710 -11.55986 -11.38923 -11.35177 -11.22176 -10.75208 -10.40108 -10.22314 -10.13071 -9.90918 -9.68030 -9.39054 -9.08309 -8.97126 -8.62055 -8.22140 -6.14713 -4.15237 2.35548 2.65361 2.72667 3.19405 3.20393 3.31205 3.33714 3.99488 4.11070 4.33355 4.47840 4.62388 4.73992 4.87069 4.88618 5.03390 5.07663 5.15306 5.22802 5.24627 5.30910 5.38857 5.45892 5.50175 5.58173 5.68887 5.79452 5.88845 5.90091 5.98099 6.10459 6.27441 6.29033 6.43857 6.57782 6.65087 6.75505 6.84101 7.05475 7.38242 7.65309 7.68957 7.92966 8.30822 8.42190 8.88467 9.46531 10.98266 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.003609 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.083875 B = 7757.444885 C = 8106.302709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.124 4.124 6 H 0.117 0.883 7 C 0.522 3.478 8 O -0.541 6.541 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.140 4.140 12 C -0.123 4.123 13 C 0.006 3.994 14 H 0.030 0.970 15 C -0.516 4.516 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.266 1.266 22 H -0.297 1.297 23 C 0.127 3.873 24 C -0.147 4.147 25 C 0.520 3.480 26 O -0.533 6.533 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.265 0.735 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -18.898 9.025 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.005 4.005 5 C -0.146 4.146 6 H 0.135 0.865 7 C 0.308 3.692 8 O -0.418 6.418 9 N -0.333 5.333 10 C -0.019 4.019 11 C -0.178 4.178 12 C -0.161 4.161 13 C -0.014 4.014 14 H 0.048 0.952 15 C -0.554 4.554 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.191 1.191 22 H -0.225 1.225 23 C 0.007 3.993 24 C -0.187 4.187 25 C 0.308 3.692 26 O -0.410 6.410 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.354 -19.040 9.031 21.204 hybrid contribution 1.209 -0.027 -0.042 1.210 sum -1.144 -19.067 8.989 21.110 Atomic orbital electron populations 1.22169 0.95676 1.02346 1.02733 1.21352 0.94545 0.80894 1.03126 1.48395 1.65730 1.13937 1.07345 1.21991 1.00660 0.91129 0.86704 1.22238 1.02513 0.94665 0.95168 0.86522 1.19932 0.81085 0.84154 0.84026 1.90702 1.35554 1.85560 1.30032 1.48291 1.43021 1.08795 1.33199 1.21897 0.89965 1.01115 0.88877 1.22019 0.96173 0.99074 1.00565 1.22001 1.00285 0.94353 0.99459 1.19478 0.91649 0.97123 0.93126 0.95153 1.20898 0.95846 1.00871 1.37808 0.90571 1.24990 0.98975 0.94584 0.94471 1.69892 1.32678 1.11670 1.39303 0.86824 0.85116 0.79554 0.76587 1.20571 1.19134 1.22499 1.21844 0.99169 0.82375 0.95959 1.22519 1.04332 0.96612 0.95256 1.20802 0.76709 0.87301 0.84381 1.90723 1.53967 1.75233 1.21066 0.92225 0.92134 0.91406 0.90203 0.90018 0.88977 0.89688 0.90314 0.91055 0.92059 0.91584 0.93153 0.91839 0.92542 0.91716 0.89448 0.86930 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.12 1.00 6.65 -4.04 -0.03 0.97 16 3 N -0.62 -6.24 2.93 -172.41 -0.51 -6.75 16 4 C 0.12 1.15 6.66 -3.12 -0.02 1.13 16 5 C -0.12 -1.27 2.57 -90.14 -0.23 -1.50 16 6 H 0.12 0.99 7.83 -51.93 -0.41 0.58 16 7 C 0.52 7.62 7.01 -10.98 -0.08 7.54 16 8 O -0.54 -9.80 14.98 5.55 0.08 -9.72 16 9 N -0.60 -9.19 2.97 -172.72 -0.51 -9.71 16 10 C 0.10 1.27 5.65 -3.71 -0.02 1.25 16 11 C -0.14 -2.02 6.08 -26.61 -0.16 -2.18 16 12 C -0.12 -2.37 4.66 -26.69 -0.12 -2.50 16 13 C 0.01 0.13 1.84 -91.61 -0.17 -0.04 16 14 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 15 C -0.52 -13.82 9.15 -34.44 -0.31 -14.14 16 16 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 18 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 19 Si 0.89 21.16 24.39 -169.99 -4.15 17.01 16 20 H -0.28 -6.39 6.86 56.52 0.39 -6.01 16 21 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 22 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.13 2.43 5.66 -3.67 -0.02 2.41 16 24 C -0.15 -1.44 5.16 -26.75 -0.14 -1.58 16 25 C 0.52 6.22 8.02 -10.86 -0.09 6.13 16 26 O -0.53 -8.19 17.60 5.55 0.10 -8.09 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 32 H 0.09 1.04 7.06 -51.93 -0.37 0.68 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.72 4.37 -51.93 -0.23 0.49 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 1.06 3.25 -51.93 -0.17 0.89 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.83 7.00 -51.93 -0.36 1.46 16 43 H 0.11 0.91 6.67 -51.93 -0.35 0.56 16 44 H 0.11 1.13 7.89 -51.93 -0.41 0.72 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -32.89 339.04 -7.11 -40.00 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.90 Total: -0.30 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.11 Total: -1.56 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.25 Total: -42.46 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.15 Total: 17.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.89 -7.11 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.172 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds