Wall clock time and date at job start Tue Mar 31 2020 07:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47143 * 2 1 4 4 C 1.46764 * 124.35052 * 269.94834 * 3 2 1 5 5 C 1.54480 * 105.47178 * 197.03873 * 4 3 2 6 6 H 1.09001 * 111.00126 * 92.72235 * 5 4 3 7 7 C 1.50703 * 110.96576 * 216.46480 * 5 4 3 8 8 O 1.21285 * 120.00229 * 353.83526 * 7 5 4 9 9 N 1.34775 * 119.99747 * 173.83428 * 7 5 4 10 10 C 1.46924 * 120.63061 * 359.97438 * 9 7 5 11 11 C 1.53190 * 108.77327 * 126.39625 * 10 9 7 12 12 C 1.53041 * 109.31835 * 54.63417 * 11 10 9 13 13 C 1.53038 * 109.53690 * 298.63807 * 12 11 10 14 14 H 1.08998 * 109.49755 * 301.37869 * 13 12 11 15 15 C 1.50696 * 109.50213 * 181.31252 * 13 12 11 16 16 H 1.07999 * 120.00319 * 240.00335 * 15 13 12 17 17 C 1.37885 * 119.99717 * 59.99718 * 15 13 12 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.46930 * 120.62826 * 180.02562 * 9 7 5 24 24 C 1.54626 * 101.76381 * 334.58393 * 5 4 3 25 25 C 1.34419 * 124.34826 * 89.97416 * 3 2 1 26 26 O 1.21284 * 124.94243 * 359.53479 * 25 3 2 27 27 H 1.08991 * 109.47111 * 300.00099 * 1 2 3 28 28 H 1.09006 * 109.46523 * 60.00111 * 1 2 3 29 29 H 1.08996 * 109.46774 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47194 * 239.99523 * 2 1 3 31 31 H 1.08997 * 109.47036 * 120.00183 * 2 1 3 32 32 H 1.08997 * 110.24314 * 78.03965 * 4 3 2 33 33 H 1.08997 * 110.24506 * 316.03787 * 4 3 2 34 34 H 1.08994 * 109.59106 * 6.60806 * 10 9 7 35 35 H 1.09004 * 109.58803 * 246.18011 * 10 9 7 36 36 H 1.09006 * 109.49955 * 294.68034 * 11 10 9 37 37 H 1.09004 * 109.50071 * 174.58732 * 11 10 9 38 38 H 1.08996 * 109.46534 * 178.61858 * 12 11 10 39 39 H 1.08998 * 109.45600 * 58.65553 * 12 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.58702 * 113.82038 * 23 9 7 42 42 H 1.08996 * 109.59054 * 353.38839 * 23 9 7 43 43 H 1.09005 * 110.48567 * 143.47818 * 24 5 4 44 44 H 1.09004 * 110.48529 * 266.11922 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2955 2.1616 -1.2117 5 6 3.1756 3.3436 -0.7483 6 1 4.2345 3.1030 -0.8437 7 6 2.8395 4.5982 -1.5125 8 8 2.0548 4.5538 -2.4362 9 7 3.4108 5.7697 -1.1693 10 6 4.3627 5.8394 -0.0523 11 6 5.6561 6.4945 -0.5470 12 6 5.3280 7.8493 -1.1787 13 6 4.4011 7.6433 -2.3790 14 1 4.8855 6.9901 -3.1048 15 6 4.1044 8.9745 -3.0198 16 1 3.0857 9.3271 -3.0856 17 6 5.1336 9.7425 -3.5221 18 7 4.8747 10.9045 -4.0809 19 14 6.8955 9.1323 -3.4088 20 1 7.5002 9.5993 -2.1354 21 1 6.9087 7.6479 -3.4480 22 1 7.6782 9.6647 -4.5530 23 6 3.0927 7.0014 -1.9045 24 6 2.7697 3.4752 0.7379 25 6 2.2707 2.0964 1.1098 26 8 2.1197 1.6949 2.2442 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3652 2.5306 -1.6435 33 1 2.8338 1.5524 -1.9378 34 1 4.5774 4.8335 0.3083 35 1 3.9364 6.4358 0.7544 36 1 6.1286 5.8517 -1.2898 37 1 6.3349 6.6399 0.2934 38 1 6.2493 8.3285 -1.5095 39 1 4.8333 8.4829 -0.4425 40 1 5.5988 11.4449 -4.4339 41 1 2.5632 7.6921 -1.2483 42 1 2.4693 6.7622 -2.7660 43 1 3.6326 3.7457 1.3465 44 1 1.9748 4.2123 0.8524 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597916173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:26 Heat of formation + Delta-G solvation = -89.888138 kcal Electronic energy + Delta-G solvation = -24589.005445 eV Core-core repulsion = 21119.214253 eV Total energy + Delta-G solvation = -3469.791192 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.05562 -40.64808 -38.61878 -37.37594 -35.56180 -34.79493 -33.44824 -32.22974 -30.69364 -28.79185 -27.25490 -26.54591 -24.68660 -23.56252 -23.16689 -21.40533 -20.50716 -19.85223 -18.87137 -18.43563 -17.77767 -17.34212 -16.68954 -16.61947 -16.13061 -16.00134 -15.40002 -14.99962 -14.96870 -14.84453 -14.72538 -14.44873 -14.31568 -14.12521 -13.90946 -13.67254 -13.22175 -12.97988 -12.94079 -12.83868 -12.50842 -12.40854 -12.35678 -12.06605 -11.99206 -11.85201 -11.47454 -11.22955 -11.14291 -11.02391 -10.67228 -10.60496 -9.79026 -9.54033 -8.30480 -6.35634 1.30023 1.37237 1.47168 1.47492 1.56975 1.85176 2.12481 2.32444 3.04937 3.11024 3.30203 3.60693 3.84048 3.94553 4.08594 4.10919 4.13741 4.25004 4.28939 4.35054 4.46625 4.51483 4.54230 4.59251 4.66509 4.77609 4.78728 4.81029 4.90569 4.92266 4.96540 5.00520 5.14056 5.18479 5.24996 5.40824 5.45564 5.53982 5.67421 5.76824 6.03666 6.27065 6.50708 6.71514 7.06847 7.15371 7.30227 8.86324 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.003609 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.083875 B = 7757.444885 C = 8106.302709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.119 3.881 5 C -0.110 4.110 6 H 0.151 0.849 7 C 0.520 3.480 8 O -0.583 6.583 9 N -0.603 5.603 10 C 0.101 3.899 11 C -0.134 4.134 12 C -0.124 4.124 13 C 0.009 3.991 14 H 0.018 0.982 15 C -0.522 4.522 16 H 0.032 0.968 17 C 0.011 3.989 18 N -0.951 5.951 19 Si 0.956 3.044 20 H -0.259 1.259 21 H -0.247 1.247 22 H -0.304 1.304 23 C 0.139 3.861 24 C -0.141 4.141 25 C 0.515 3.485 26 O -0.573 6.573 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.266 0.734 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.140 0.860 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -21.756 10.828 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.348 5.348 4 C -0.003 4.003 5 C -0.131 4.131 6 H 0.169 0.831 7 C 0.309 3.691 8 O -0.463 6.463 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.172 4.172 12 C -0.162 4.162 13 C -0.011 4.011 14 H 0.036 0.964 15 C -0.561 4.561 16 H 0.050 0.950 17 C -0.186 4.186 18 N -0.591 5.591 19 Si 0.783 3.217 20 H -0.185 1.185 21 H -0.171 1.171 22 H -0.233 1.233 23 C 0.016 3.984 24 C -0.181 4.181 25 C 0.303 3.697 26 O -0.453 6.453 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.158 0.842 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.080 -21.935 10.851 24.472 hybrid contribution 0.328 0.881 -0.670 1.155 sum 0.248 -21.054 10.181 23.387 Atomic orbital electron populations 1.22135 0.95689 1.03298 1.01403 1.21562 0.94546 0.80144 1.04260 1.48522 1.64794 1.14501 1.06979 1.21997 1.00111 0.91391 0.86843 1.22202 1.04374 0.92007 0.94535 0.83144 1.20666 0.79944 0.84971 0.83564 1.90694 1.37302 1.86224 1.32109 1.48290 1.43923 1.07562 1.33647 1.22223 0.88173 1.03820 0.87811 1.22007 0.97912 0.95731 1.01586 1.21884 0.98463 0.97683 0.98146 1.19358 0.93690 0.94001 0.94041 0.96434 1.21262 0.93943 1.03095 1.37766 0.94957 1.25910 1.03984 0.94582 0.94142 1.70060 1.34206 1.13514 1.41297 0.85736 0.79055 0.79956 0.76962 1.18506 1.17122 1.23272 1.21336 0.97279 0.84249 0.95514 1.22542 1.05263 0.95249 0.94996 1.21128 0.76379 0.88063 0.84090 1.90707 1.55901 1.76124 1.22583 0.94479 0.92413 0.89403 0.87449 0.90457 0.90878 0.87300 0.86037 0.89472 0.91900 0.87954 0.94648 0.91936 0.92544 0.92040 0.92332 0.84181 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 71.98 0.74 -1.65 16 2 C 0.12 1.62 6.65 86.38 0.57 2.19 16 3 N -0.61 -10.80 2.93 -817.99 -2.40 -13.19 16 4 C 0.12 1.98 6.66 86.83 0.58 2.56 16 5 C -0.11 -1.82 2.57 -10.48 -0.03 -1.85 16 6 H 0.15 1.61 7.83 -2.39 -0.02 1.59 16 7 C 0.52 14.06 7.01 87.66 0.61 14.67 16 8 O -0.58 -20.96 14.98 -3.05 -0.05 -21.01 16 9 N -0.60 -17.05 2.97 -818.76 -2.43 -19.48 16 10 C 0.10 1.97 5.65 86.36 0.49 2.46 16 11 C -0.13 -3.21 6.08 30.67 0.19 -3.02 16 12 C -0.12 -4.48 4.66 30.62 0.14 -4.34 16 13 C 0.01 0.38 1.84 -11.44 -0.02 0.36 16 14 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 15 C -0.52 -29.15 9.15 25.60 0.23 -28.91 16 16 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 17 C 0.01 0.62 5.45 84.66 0.46 1.08 16 18 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 19 Si 0.96 43.65 24.39 68.60 1.67 45.32 16 20 H -0.26 -10.96 6.86 99.48 0.68 -10.28 16 21 H -0.25 -10.40 6.53 99.48 0.65 -9.75 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 C 0.14 5.36 5.66 86.39 0.49 5.85 16 24 C -0.14 -2.22 5.16 30.58 0.16 -2.06 16 25 C 0.51 11.01 8.02 87.90 0.71 11.72 16 26 O -0.57 -16.71 17.60 -3.04 -0.05 -16.76 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.18 7.93 -2.39 -0.02 1.16 16 32 H 0.07 1.55 7.06 -2.39 -0.02 1.53 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 1.39 4.37 -2.39 -0.01 1.38 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.52 8.14 -2.38 -0.02 1.51 16 37 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.04 1.38 3.25 -2.39 -0.01 1.37 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.06 2.57 7.00 -2.39 -0.02 2.55 16 43 H 0.14 1.46 6.67 -2.38 -0.02 1.44 16 44 H 0.11 1.85 7.89 -2.38 -0.02 1.83 16 Total: -1.00 -77.29 339.04 3.27 -74.02 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.91 Total: 10.81 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.32 Total: -0.94 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -4.53 Total: -91.44 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.10 Total: -37.77 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.67 Total: 45.32 kcal Total: -77.29 3.27 -74.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.870 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds