Wall clock time and date at job start Tue Mar 31 2020 07:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47502 * 2 1 4 4 C 1.46760 * 124.35229 * 269.95771 * 3 2 1 5 5 C 1.54473 * 105.47856 * 162.99892 * 4 3 2 6 6 H 1.09003 * 111.00436 * 267.28230 * 5 4 3 7 7 C 1.50706 * 110.97109 * 143.52880 * 5 4 3 8 8 O 1.21278 * 120.00064 * 6.16983 * 7 5 4 9 9 N 1.34778 * 119.99786 * 186.17176 * 7 5 4 10 10 C 1.46922 * 120.63238 * 359.97438 * 9 7 5 11 11 C 1.53196 * 108.77606 * 233.63495 * 10 9 7 12 12 C 1.53037 * 109.31040 * 305.36550 * 11 10 9 13 13 C 1.53039 * 109.54101 * 61.36876 * 12 11 10 14 14 H 1.08994 * 109.49826 * 58.58410 * 13 12 11 15 15 C 1.50695 * 109.52586 * 178.66553 * 13 12 11 16 16 H 1.08010 * 119.99722 * 119.85290 * 15 13 12 17 17 C 1.37876 * 120.00267 * 299.85222 * 15 13 12 18 18 N 1.31512 * 120.00148 * 180.02562 * 17 15 13 19 19 Si 1.86797 * 119.99940 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47009 * 89.99620 * 19 17 15 21 21 H 1.48496 * 109.47312 * 209.99983 * 19 17 15 22 22 H 1.48504 * 109.46939 * 330.00039 * 19 17 15 23 23 C 1.46931 * 120.62714 * 180.02562 * 9 7 5 24 24 C 1.54627 * 101.76453 * 25.41362 * 5 4 3 25 25 C 1.34420 * 124.34979 * 89.96682 * 3 2 1 26 26 O 1.21281 * 124.93830 * 0.43381 * 25 3 2 27 27 H 1.08998 * 109.47001 * 60.00142 * 1 2 3 28 28 H 1.08999 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47014 * 300.00340 * 1 2 3 30 30 H 1.09008 * 109.47183 * 239.99925 * 2 1 3 31 31 H 1.09006 * 109.47061 * 120.00182 * 2 1 3 32 32 H 1.09000 * 110.24849 * 43.99665 * 4 3 2 33 33 H 1.09008 * 110.24193 * 281.99973 * 4 3 2 34 34 H 1.08999 * 109.58543 * 113.84583 * 10 9 7 35 35 H 1.09003 * 109.70593 * 353.48777 * 10 9 7 36 36 H 1.08999 * 109.50112 * 65.32084 * 11 10 9 37 37 H 1.09004 * 109.49641 * 185.41325 * 11 10 9 38 38 H 1.09000 * 109.46060 * 181.39134 * 12 11 10 39 39 H 1.09006 * 109.46385 * 301.34352 * 12 11 10 40 40 H 0.97000 * 119.99802 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.57916 * 246.14924 * 23 9 7 42 42 H 1.08997 * 109.58813 * 6.57526 * 23 9 7 43 43 H 1.08997 * 110.48990 * 93.87745 * 24 5 4 44 44 H 1.08999 * 110.48783 * 216.52516 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2954 2.1616 -1.2116 5 6 2.3541 3.6343 -0.7490 6 1 1.3798 4.1133 -0.8457 7 6 3.4056 4.3979 -1.5121 8 8 3.9888 3.8694 -2.4348 9 7 3.6980 5.6680 -1.1690 10 6 2.9997 6.3219 -0.0539 11 6 2.4070 7.6443 -0.5508 12 6 3.5154 8.4906 -1.1811 13 6 4.1086 7.7466 -2.3797 14 1 3.3224 7.5424 -3.1065 15 6 5.1775 8.5942 -3.0199 16 1 6.1919 8.2283 -3.0816 17 6 4.8607 9.8366 -3.5269 18 7 5.7935 10.5761 -4.0860 19 14 3.1065 10.4695 -3.4195 20 1 2.9268 11.2168 -2.1488 21 1 2.8347 11.3719 -4.5671 22 1 2.1635 9.3230 -3.4571 23 6 4.7203 6.4255 -1.9039 24 6 2.7506 3.4820 0.7378 25 6 2.2707 2.0964 1.1098 26 8 2.1342 1.6898 2.2442 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.4946 2.0263 -1.9387 33 1 3.2513 1.8631 -1.6422 34 1 3.7047 6.5181 0.7539 35 1 2.1996 5.6761 0.3080 36 1 1.6368 7.4411 -1.2948 37 1 1.9692 8.1849 0.2884 38 1 3.1012 9.4425 -1.5133 39 1 4.2972 8.6727 -0.4436 40 1 5.5706 11.4503 -4.4423 41 1 5.5657 6.6302 -1.2471 42 1 5.0552 5.8470 -2.7648 43 1 3.8320 3.5550 0.8537 44 1 2.2492 4.2353 1.3455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597916174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:30 Heat of formation + Delta-G solvation = -67.291004 kcal Electronic energy + Delta-G solvation = -24593.111679 eV Core-core repulsion = 21124.300372 eV Total energy + Delta-G solvation = -3468.811307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09872 -39.52775 -37.29929 -36.39776 -34.39356 -33.41654 -31.85054 -30.83546 -29.81870 -27.94926 -25.71419 -25.13264 -23.78362 -22.65236 -21.76031 -20.01520 -19.57544 -18.68627 -17.48206 -17.05575 -16.76101 -16.22334 -15.75464 -15.14696 -14.89086 -14.66169 -14.31238 -14.02414 -13.78597 -13.66591 -13.55688 -13.42735 -13.08163 -12.68209 -12.57932 -12.52302 -12.35487 -12.20236 -11.79265 -11.58692 -11.39746 -11.36394 -11.22158 -10.75372 -10.40198 -10.22238 -10.12774 -9.90816 -9.67855 -9.39081 -9.08242 -8.97148 -8.62089 -8.22219 -6.14696 -4.15265 2.35385 2.65861 2.72532 3.19427 3.20311 3.31231 3.33717 3.99340 4.11570 4.33390 4.47729 4.62427 4.73107 4.84857 4.87924 5.03233 5.05688 5.15315 5.23018 5.24589 5.30438 5.38106 5.45997 5.49470 5.56400 5.68485 5.79551 5.84030 5.89983 5.98166 6.10555 6.27113 6.28962 6.43953 6.57829 6.65196 6.75471 6.84333 7.05662 7.38223 7.65282 7.68978 7.93077 8.30773 8.42172 8.88417 9.46562 10.98279 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031791 B = 0.003595 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.552636 B = 7786.175533 C = 7972.859903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.124 4.124 6 H 0.116 0.884 7 C 0.522 3.478 8 O -0.541 6.541 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.140 4.140 12 C -0.123 4.123 13 C 0.006 3.994 14 H 0.030 0.970 15 C -0.516 4.516 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.266 1.266 23 C 0.127 3.873 24 C -0.147 4.147 25 C 0.520 3.480 26 O -0.533 6.533 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.265 0.735 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 -15.646 9.027 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.354 5.354 4 C -0.005 4.005 5 C -0.146 4.146 6 H 0.134 0.866 7 C 0.308 3.692 8 O -0.418 6.418 9 N -0.333 5.333 10 C -0.019 4.019 11 C -0.178 4.178 12 C -0.161 4.161 13 C -0.014 4.014 14 H 0.048 0.952 15 C -0.554 4.554 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.191 1.191 23 C 0.007 3.993 24 C -0.187 4.187 25 C 0.308 3.692 26 O -0.410 6.410 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.129 0.871 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.786 -16.050 9.034 21.344 hybrid contribution -1.028 0.762 -0.046 1.280 sum -11.814 -15.288 8.987 21.309 Atomic orbital electron populations 1.22162 0.95707 1.02379 1.02542 1.21351 0.94379 0.81015 1.03292 1.48390 1.65695 1.13974 1.07340 1.21986 1.03530 0.88210 0.86759 1.22231 1.00691 0.96463 0.95174 0.86567 1.19930 0.83305 0.81949 0.84001 1.90700 1.52843 1.68233 1.30069 1.48288 1.39610 1.12108 1.33286 1.21890 0.96409 0.94643 0.88916 1.22018 0.99405 0.95846 1.00561 1.22000 0.96537 0.98086 0.99463 1.19458 0.96883 0.91912 0.93139 0.95163 1.20895 0.95968 1.00812 1.37734 0.90570 1.24984 0.96922 0.96632 0.94472 1.69889 1.33005 1.11445 1.39205 0.86826 0.85876 0.78811 0.76593 1.20562 1.22487 1.19137 1.21822 0.88694 0.92854 0.95966 1.22517 1.04633 0.96327 0.95242 1.20808 0.76389 0.87617 0.84386 1.90722 1.53677 1.75532 1.21071 0.92294 0.91380 0.92233 0.90126 0.89972 0.89748 0.88899 0.91065 0.90324 0.92065 0.91587 0.93154 0.91841 0.92540 0.91715 0.89445 0.87102 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.12 0.99 6.65 -4.04 -0.03 0.96 16 3 N -0.62 -6.24 2.93 -172.41 -0.51 -6.75 16 4 C 0.12 1.15 6.66 -3.13 -0.02 1.13 16 5 C -0.12 -1.27 2.57 -90.14 -0.23 -1.50 16 6 H 0.12 1.00 7.83 -51.93 -0.41 0.59 16 7 C 0.52 7.62 7.01 -10.98 -0.08 7.54 16 8 O -0.54 -9.79 14.98 5.56 0.08 -9.71 16 9 N -0.60 -9.19 2.97 -172.78 -0.51 -9.71 16 10 C 0.10 1.27 5.65 -3.71 -0.02 1.25 16 11 C -0.14 -2.02 6.08 -26.61 -0.16 -2.18 16 12 C -0.12 -2.37 4.66 -26.69 -0.12 -2.49 16 13 C 0.01 0.12 1.84 -91.67 -0.17 -0.04 16 14 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 15 C -0.52 -13.81 9.14 -34.44 -0.31 -14.13 16 16 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 17 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 18 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 19 Si 0.89 21.15 24.39 -169.99 -4.15 17.01 16 20 H -0.28 -6.39 6.86 56.52 0.39 -6.00 16 21 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 23 C 0.13 2.43 5.65 -3.73 -0.02 2.41 16 24 C -0.15 -1.44 5.16 -26.74 -0.14 -1.58 16 25 C 0.52 6.22 8.02 -10.86 -0.09 6.13 16 26 O -0.53 -8.19 17.59 5.56 0.10 -8.09 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.04 7.06 -51.92 -0.37 0.67 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.72 4.38 -51.93 -0.23 0.49 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.83 7.00 -51.93 -0.36 1.46 16 43 H 0.11 1.12 7.89 -51.93 -0.41 0.71 16 44 H 0.11 0.91 6.67 -51.93 -0.35 0.57 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -32.85 339.05 -7.11 -39.97 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.90 Total: -0.40 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.11 Total: -1.43 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.25 Total: -42.45 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.15 Total: 17.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.85 -7.11 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.322 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds