Wall clock time and date at job start Tue Mar 31 2020 07:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47502 * 2 1 4 4 C 1.46760 * 124.35229 * 269.95771 * 3 2 1 5 5 C 1.54473 * 105.47856 * 162.99892 * 4 3 2 6 6 H 1.09003 * 111.00436 * 267.28230 * 5 4 3 7 7 C 1.50706 * 110.97109 * 143.52880 * 5 4 3 8 8 O 1.21278 * 120.00064 * 6.16983 * 7 5 4 9 9 N 1.34778 * 119.99786 * 186.17176 * 7 5 4 10 10 C 1.46922 * 120.63238 * 359.97438 * 9 7 5 11 11 C 1.53196 * 108.77606 * 233.63495 * 10 9 7 12 12 C 1.53037 * 109.31040 * 305.36550 * 11 10 9 13 13 C 1.53039 * 109.54101 * 61.36876 * 12 11 10 14 14 H 1.08994 * 109.49826 * 58.58410 * 13 12 11 15 15 C 1.50695 * 109.52586 * 178.66553 * 13 12 11 16 16 H 1.08010 * 119.99722 * 119.85290 * 15 13 12 17 17 C 1.37876 * 120.00267 * 299.85222 * 15 13 12 18 18 N 1.31512 * 120.00148 * 180.02562 * 17 15 13 19 19 Si 1.86797 * 119.99940 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47009 * 89.99620 * 19 17 15 21 21 H 1.48496 * 109.47312 * 209.99983 * 19 17 15 22 22 H 1.48504 * 109.46939 * 330.00039 * 19 17 15 23 23 C 1.46931 * 120.62714 * 180.02562 * 9 7 5 24 24 C 1.54627 * 101.76453 * 25.41362 * 5 4 3 25 25 C 1.34420 * 124.34979 * 89.96682 * 3 2 1 26 26 O 1.21281 * 124.93830 * 0.43381 * 25 3 2 27 27 H 1.08998 * 109.47001 * 60.00142 * 1 2 3 28 28 H 1.08999 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47014 * 300.00340 * 1 2 3 30 30 H 1.09008 * 109.47183 * 239.99925 * 2 1 3 31 31 H 1.09006 * 109.47061 * 120.00182 * 2 1 3 32 32 H 1.09000 * 110.24849 * 43.99665 * 4 3 2 33 33 H 1.09008 * 110.24193 * 281.99973 * 4 3 2 34 34 H 1.08999 * 109.58543 * 113.84583 * 10 9 7 35 35 H 1.09003 * 109.70593 * 353.48777 * 10 9 7 36 36 H 1.08999 * 109.50112 * 65.32084 * 11 10 9 37 37 H 1.09004 * 109.49641 * 185.41325 * 11 10 9 38 38 H 1.09000 * 109.46060 * 181.39134 * 12 11 10 39 39 H 1.09006 * 109.46385 * 301.34352 * 12 11 10 40 40 H 0.97000 * 119.99802 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.57916 * 246.14924 * 23 9 7 42 42 H 1.08997 * 109.58813 * 6.57526 * 23 9 7 43 43 H 1.08997 * 110.48990 * 93.87745 * 24 5 4 44 44 H 1.08999 * 110.48783 * 216.52516 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2954 2.1616 -1.2116 5 6 2.3541 3.6343 -0.7490 6 1 1.3798 4.1133 -0.8457 7 6 3.4056 4.3979 -1.5121 8 8 3.9888 3.8694 -2.4348 9 7 3.6980 5.6680 -1.1690 10 6 2.9997 6.3219 -0.0539 11 6 2.4070 7.6443 -0.5508 12 6 3.5154 8.4906 -1.1811 13 6 4.1086 7.7466 -2.3797 14 1 3.3224 7.5424 -3.1065 15 6 5.1775 8.5942 -3.0199 16 1 6.1919 8.2283 -3.0816 17 6 4.8607 9.8366 -3.5269 18 7 5.7935 10.5761 -4.0860 19 14 3.1065 10.4695 -3.4195 20 1 2.9268 11.2168 -2.1488 21 1 2.8347 11.3719 -4.5671 22 1 2.1635 9.3230 -3.4571 23 6 4.7203 6.4255 -1.9039 24 6 2.7506 3.4820 0.7378 25 6 2.2707 2.0964 1.1098 26 8 2.1342 1.6898 2.2442 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.4946 2.0263 -1.9387 33 1 3.2513 1.8631 -1.6422 34 1 3.7047 6.5181 0.7539 35 1 2.1996 5.6761 0.3080 36 1 1.6368 7.4411 -1.2948 37 1 1.9692 8.1849 0.2884 38 1 3.1012 9.4425 -1.5133 39 1 4.2972 8.6727 -0.4436 40 1 5.5706 11.4503 -4.4423 41 1 5.5657 6.6302 -1.2471 42 1 5.0552 5.8470 -2.7648 43 1 3.8320 3.5550 0.8537 44 1 2.2492 4.2353 1.3455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597916174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:29 Heat of formation + Delta-G solvation = -89.921997 kcal Electronic energy + Delta-G solvation = -24594.093033 eV Core-core repulsion = 21124.300372 eV Total energy + Delta-G solvation = -3469.792660 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.05820 -40.65068 -38.62214 -37.38046 -35.55785 -34.78400 -33.44762 -32.23287 -30.69975 -28.78954 -27.25716 -26.54816 -24.63997 -23.58054 -23.16761 -21.39132 -20.49775 -19.87306 -18.84956 -18.41628 -17.87000 -17.30912 -16.77237 -16.63794 -16.04239 -15.92835 -15.41761 -15.08427 -14.90644 -14.84848 -14.70235 -14.51266 -14.28250 -14.06897 -13.90373 -13.63370 -13.35561 -12.95682 -12.88337 -12.80292 -12.51386 -12.42675 -12.35140 -12.06387 -11.99429 -11.85136 -11.47381 -11.23208 -11.14072 -11.02182 -10.67232 -10.60361 -9.78555 -9.54098 -8.30422 -6.35584 1.30040 1.37220 1.47127 1.47435 1.56994 1.84963 2.12176 2.32467 3.05003 3.10703 3.30052 3.60157 3.83913 3.94205 4.08452 4.10671 4.14210 4.25765 4.28882 4.35086 4.48216 4.51259 4.55857 4.58805 4.65343 4.77654 4.78925 4.83859 4.91885 4.93799 4.97120 5.00607 5.14010 5.18384 5.28456 5.40826 5.45590 5.53909 5.67459 5.76802 6.03787 6.27110 6.50602 6.71561 7.06774 7.15216 7.30327 8.86372 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031791 B = 0.003595 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.552636 B = 7786.175533 C = 7972.859903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.615 5.615 4 C 0.120 3.880 5 C -0.110 4.110 6 H 0.149 0.851 7 C 0.520 3.480 8 O -0.582 6.582 9 N -0.603 5.603 10 C 0.101 3.899 11 C -0.134 4.134 12 C -0.124 4.124 13 C 0.008 3.992 14 H 0.017 0.983 15 C -0.522 4.522 16 H 0.032 0.968 17 C 0.011 3.989 18 N -0.951 5.951 19 Si 0.956 3.044 20 H -0.259 1.259 21 H -0.304 1.304 22 H -0.248 1.248 23 C 0.139 3.861 24 C -0.140 4.140 25 C 0.515 3.485 26 O -0.573 6.573 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.266 0.734 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.108 0.892 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.493 -16.426 10.811 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.348 5.348 4 C -0.003 4.003 5 C -0.131 4.131 6 H 0.167 0.833 7 C 0.309 3.691 8 O -0.463 6.463 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.172 4.172 12 C -0.162 4.162 13 C -0.011 4.011 14 H 0.035 0.965 15 C -0.560 4.560 16 H 0.051 0.949 17 C -0.186 4.186 18 N -0.591 5.591 19 Si 0.783 3.217 20 H -0.185 1.185 21 H -0.233 1.233 22 H -0.172 1.172 23 C 0.016 3.984 24 C -0.180 4.180 25 C 0.303 3.697 26 O -0.453 6.453 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.126 0.874 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.239 -16.860 10.834 24.584 hybrid contribution 0.185 0.910 -0.668 1.144 sum -14.054 -15.950 10.166 23.564 Atomic orbital electron populations 1.22098 0.94601 1.03359 1.01988 1.21550 0.95274 0.80184 1.03744 1.48517 1.64747 1.14551 1.06988 1.21983 1.03567 0.87888 0.86858 1.22189 1.00198 0.96125 0.94597 0.83325 1.20648 0.83378 0.81543 0.83533 1.90692 1.54408 1.69066 1.32122 1.48285 1.39021 1.12370 1.33728 1.22214 0.97718 0.94233 0.87869 1.22006 0.97475 0.96188 1.01574 1.21881 0.98268 0.97846 0.98155 1.19339 0.94987 0.92741 0.94048 0.96463 1.21258 0.95629 1.01465 1.37680 0.94934 1.25902 1.01612 0.96939 0.94148 1.70057 1.35681 1.12139 1.41197 0.85741 0.80432 0.78607 0.76968 1.18498 1.23252 1.17158 1.21315 0.89768 0.91749 0.95528 1.22540 1.04730 0.95826 0.94928 1.21134 0.75968 0.88484 0.84085 1.90706 1.55583 1.76471 1.22588 0.91519 0.89747 0.93935 0.88186 0.91066 0.87585 0.90600 0.89448 0.86087 0.91936 0.87966 0.94658 0.91916 0.92543 0.92012 0.92314 0.87404 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.24 71.98 0.74 -1.17 16 2 C 0.11 1.61 6.65 86.38 0.57 2.19 16 3 N -0.61 -10.87 2.93 -817.98 -2.40 -13.27 16 4 C 0.12 2.00 6.66 86.83 0.58 2.58 16 5 C -0.11 -1.83 2.57 -10.48 -0.03 -1.86 16 6 H 0.15 1.65 7.83 -2.39 -0.02 1.63 16 7 C 0.52 14.06 7.01 87.66 0.61 14.67 16 8 O -0.58 -20.89 14.98 -3.02 -0.05 -20.94 16 9 N -0.60 -17.03 2.97 -818.95 -2.43 -19.47 16 10 C 0.10 1.98 5.65 86.36 0.49 2.46 16 11 C -0.13 -3.22 6.08 30.67 0.19 -3.03 16 12 C -0.12 -4.47 4.66 30.62 0.14 -4.33 16 13 C 0.01 0.37 1.84 -11.48 -0.02 0.35 16 14 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 15 C -0.52 -29.10 9.14 25.60 0.23 -28.87 16 16 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 17 C 0.01 0.63 5.45 84.65 0.46 1.09 16 18 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 19 Si 0.96 43.65 24.39 68.60 1.67 45.32 16 20 H -0.26 -10.96 6.86 99.48 0.68 -10.28 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.25 -10.43 6.53 99.48 0.65 -9.78 16 23 C 0.14 5.36 5.65 86.35 0.49 5.84 16 24 C -0.14 -2.22 5.16 30.59 0.16 -2.06 16 25 C 0.51 11.04 8.02 87.90 0.71 11.75 16 26 O -0.57 -16.76 17.59 -3.03 -0.05 -16.82 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.18 7.92 -2.38 -0.02 1.17 16 32 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.58 7.06 -2.38 -0.02 1.57 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.12 1.40 4.38 -2.39 -0.01 1.39 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.04 1.38 3.27 -2.39 -0.01 1.37 16 39 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.06 2.57 7.00 -2.39 -0.02 2.55 16 43 H 0.11 1.85 7.89 -2.39 -0.02 1.84 16 44 H 0.14 1.47 6.67 -2.39 -0.02 1.46 16 Total: -1.00 -76.91 339.05 3.27 -73.64 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.91 Total: 10.64 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.32 Total: -0.39 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.53 Total: -91.46 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.10 Total: -37.75 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.67 Total: 45.32 kcal Total: -76.91 3.27 -73.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.283 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds