Wall clock time and date at job start Tue Mar 31 2020 07:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47349 * 2 1 4 4 C 1.46766 * 124.34634 * 90.00069 * 3 2 1 5 5 C 1.54480 * 105.47504 * 163.00462 * 4 3 2 6 6 H 1.08998 * 110.96857 * 267.29572 * 5 4 3 7 7 C 1.50696 * 110.97036 * 143.53023 * 5 4 3 8 8 O 1.21286 * 120.00048 * 0.02562 * 7 5 4 9 9 N 1.34777 * 120.00277 * 180.02562 * 7 5 4 10 10 C 1.46925 * 120.62888 * 0.02562 * 9 7 5 11 11 C 1.53193 * 108.77512 * 126.36496 * 10 9 7 12 12 C 1.53041 * 109.31125 * 54.63936 * 11 10 9 13 13 C 1.53043 * 109.53510 * 298.63035 * 12 11 10 14 14 H 1.08996 * 109.50201 * 301.38250 * 13 12 11 15 15 C 1.50698 * 109.49609 * 181.31718 * 13 12 11 16 16 H 1.08006 * 120.00149 * 240.00221 * 15 13 12 17 17 C 1.37875 * 120.00116 * 60.00317 * 15 13 12 18 18 N 1.31513 * 120.00183 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00304 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47155 * 89.99656 * 19 17 15 21 21 H 1.48494 * 109.47280 * 210.00186 * 19 17 15 22 22 H 1.48510 * 109.46905 * 330.00006 * 19 17 15 23 23 C 1.46923 * 120.63091 * 179.72249 * 9 7 5 24 24 C 1.54631 * 101.76379 * 25.41563 * 5 4 3 25 25 C 1.34417 * 124.35563 * 270.02479 * 3 2 1 26 26 O 1.21284 * 124.93817 * 0.40833 * 25 3 2 27 27 H 1.08993 * 109.46869 * 299.99942 * 1 2 3 28 28 H 1.09007 * 109.47099 * 59.99995 * 1 2 3 29 29 H 1.08998 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47228 * 240.00169 * 2 1 3 31 31 H 1.09002 * 109.47081 * 120.00495 * 2 1 3 32 32 H 1.09000 * 110.24445 * 282.00685 * 4 3 2 33 33 H 1.08996 * 110.24758 * 44.00415 * 4 3 2 34 34 H 1.08998 * 109.58600 * 246.15833 * 10 9 7 35 35 H 1.09007 * 109.58466 * 6.58143 * 10 9 7 36 36 H 1.08999 * 109.49599 * 174.58699 * 11 10 9 37 37 H 1.08997 * 109.49972 * 294.68367 * 11 10 9 38 38 H 1.09001 * 109.46144 * 58.64813 * 12 11 10 39 39 H 1.08995 * 109.46125 * 178.61675 * 12 11 10 40 40 H 0.97001 * 120.00517 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.58810 * 353.41948 * 23 9 7 42 42 H 1.09000 * 109.58737 * 113.84637 * 23 9 7 43 43 H 1.08997 * 110.48613 * 216.52254 * 24 5 4 44 44 H 1.09006 * 110.48585 * 93.87692 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2118 5 6 3.1741 3.3443 0.7488 6 1 4.2329 3.1038 0.8447 7 6 2.8368 4.5988 1.5125 8 8 1.9708 4.5777 2.3614 9 7 3.4976 5.7444 1.2524 10 6 4.5487 5.7859 0.2267 11 6 4.2292 6.9120 -0.7615 12 6 4.0485 8.2233 0.0066 13 6 2.8758 8.0883 0.9807 14 1 1.9698 7.8410 0.4275 15 6 2.6782 9.3903 1.7133 16 1 2.7583 9.4218 2.7900 17 6 2.3950 10.5414 1.0093 18 7 2.2978 10.5033 -0.3017 19 14 2.1492 12.1552 1.9174 20 1 3.4536 12.8529 2.0488 21 1 1.2039 13.0119 1.1575 22 1 1.5949 11.8837 3.2681 23 6 3.1758 6.9769 1.9845 24 6 2.7688 3.4757 -0.7377 25 6 2.2708 2.0965 -1.1097 26 8 2.1207 1.6948 -2.2442 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.3637 2.5303 1.6432 33 1 2.8327 1.5531 1.9382 34 1 5.5125 5.9764 0.6988 35 1 4.5807 4.8334 -0.3025 36 1 5.0495 7.0164 -1.4716 37 1 3.3106 6.6752 -1.2983 38 1 4.9588 8.4467 0.5629 39 1 3.8452 9.0309 -0.6965 40 1 2.0982 11.3131 -0.7971 41 1 2.3022 6.8102 2.6146 42 1 4.0251 7.2669 2.6030 43 1 3.6318 3.7466 -1.3459 44 1 1.9735 4.2123 -0.8526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597916176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:35 Heat of formation + Delta-G solvation = -75.734564 kcal Electronic energy + Delta-G solvation = -24626.157669 eV Core-core repulsion = 21156.980221 eV Total energy + Delta-G solvation = -3469.177447 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.96840 -39.36078 -37.04579 -36.26078 -34.25286 -33.40413 -31.42523 -30.58693 -29.53321 -27.83140 -25.36263 -25.03958 -23.67375 -22.44337 -21.73789 -20.04643 -19.34970 -18.32525 -17.54512 -16.81216 -16.37656 -15.96195 -15.48870 -15.12385 -14.77158 -14.57182 -14.07794 -13.81583 -13.78434 -13.54224 -13.34586 -13.13169 -12.78459 -12.68604 -12.37516 -12.21156 -12.18669 -11.99293 -11.59076 -11.43507 -11.26565 -11.01005 -10.89557 -10.77024 -10.34569 -10.05611 -9.97902 -9.87234 -9.53630 -9.37995 -8.89688 -8.85721 -8.43227 -8.01254 -6.05828 -4.13319 2.47527 2.76151 2.83617 3.27123 3.33123 3.35198 3.40059 4.12528 4.25942 4.39249 4.60323 4.73088 4.84028 4.96598 5.00503 5.14774 5.19931 5.25491 5.31233 5.46009 5.49210 5.55686 5.60904 5.67114 5.74236 5.80593 5.97386 6.04534 6.26840 6.31905 6.37975 6.41561 6.59247 6.73137 6.87271 6.94026 7.10004 7.27033 7.64527 7.82421 7.90974 8.02888 8.04533 8.31092 8.46953 8.90194 9.52039 10.99606 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.003593 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.218038 B = 7791.880692 C = 8022.806025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.621 5.621 4 C 0.117 3.883 5 C -0.123 4.123 6 H 0.114 0.886 7 C 0.520 3.480 8 O -0.546 6.546 9 N -0.596 5.596 10 C 0.103 3.897 11 C -0.136 4.136 12 C -0.113 4.113 13 C 0.040 3.960 14 H 0.029 0.971 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.117 3.883 24 C -0.145 4.145 25 C 0.521 3.479 26 O -0.533 6.533 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.096 0.904 40 H 0.261 0.739 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.112 0.888 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -17.258 0.643 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.355 5.355 4 C -0.006 4.006 5 C -0.145 4.145 6 H 0.132 0.868 7 C 0.306 3.694 8 O -0.424 6.424 9 N -0.327 5.327 10 C -0.020 4.020 11 C -0.174 4.174 12 C -0.151 4.151 13 C 0.021 3.979 14 H 0.047 0.953 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.004 4.004 24 C -0.186 4.186 25 C 0.309 3.691 26 O -0.409 6.409 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.131 0.869 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.313 -17.430 0.354 17.745 hybrid contribution -0.020 1.031 0.424 1.115 sum 3.293 -16.399 0.778 16.744 Atomic orbital electron populations 1.22173 0.95719 1.02263 1.02816 1.21336 0.94534 0.80967 1.03010 1.48383 1.65889 1.13878 1.07364 1.22000 1.00796 0.91053 0.86710 1.22219 1.02189 0.94649 0.95415 0.86843 1.19922 0.81817 0.84274 0.83358 1.90680 1.32317 1.85023 1.34420 1.48265 1.36514 1.09895 1.38058 1.21911 0.90430 0.99842 0.89841 1.22014 1.00928 0.97050 0.97411 1.21638 0.98327 0.95389 0.99743 1.18890 0.94715 0.91811 0.92532 0.95279 1.21057 1.48459 0.92580 0.93310 0.92469 1.24932 0.94980 0.99003 0.94857 1.69864 1.48703 1.28358 1.05727 0.86579 0.77988 0.83469 0.79883 1.20687 1.21233 1.19849 1.21949 1.00467 0.82418 0.95523 1.22464 1.04525 0.96517 0.95047 1.20817 0.76636 0.87268 0.84355 1.90719 1.53929 1.75206 1.21069 0.92136 0.92173 0.91471 0.90053 0.90305 0.88876 0.89904 0.91690 0.90830 0.92301 0.92235 0.94543 0.88563 0.92924 0.90190 0.92517 0.86944 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.12 1.11 6.65 -4.04 -0.03 1.08 16 3 N -0.62 -6.93 2.93 -172.41 -0.51 -7.43 16 4 C 0.12 1.25 6.71 -3.12 -0.02 1.23 16 5 C -0.12 -1.39 2.52 -90.14 -0.23 -1.62 16 6 H 0.11 1.00 7.80 -51.93 -0.40 0.60 16 7 C 0.52 8.19 6.98 -10.99 -0.08 8.12 16 8 O -0.55 -10.44 14.92 5.55 0.08 -10.36 16 9 N -0.60 -9.91 2.98 -173.05 -0.52 -10.43 16 10 C 0.10 1.42 6.05 -3.71 -0.02 1.39 16 11 C -0.14 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.11 -2.41 4.96 -26.69 -0.13 -2.54 16 13 C 0.04 0.93 2.24 -91.89 -0.21 0.72 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.52 -13.54 8.56 -34.44 -0.29 -13.84 16 16 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.42 11.31 55.43 0.63 -23.80 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.12 2.37 5.63 -3.95 -0.02 2.35 16 24 C -0.15 -1.73 5.46 -26.74 -0.15 -1.88 16 25 C 0.52 7.03 8.02 -10.86 -0.09 6.94 16 26 O -0.53 -8.98 17.60 5.55 0.10 -8.88 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.77 7.93 -51.92 -0.41 0.35 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.16 6.96 -51.93 -0.36 0.80 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.79 4.17 -51.93 -0.22 0.57 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 2.37 6.04 -51.93 -0.31 2.05 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.08 1.75 7.01 -51.93 -0.36 1.38 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.11 1.16 6.71 -51.93 -0.35 0.81 16 44 H 0.11 1.51 7.89 -51.93 -0.41 1.10 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -31.09 346.10 -8.18 -39.27 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.02 Total: 0.67 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.14 Total: 0.04 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.39 Total: -41.66 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.18 Total: -19.24 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.09 -8.18 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.465 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds