Wall clock time and date at job start Tue Mar 31 2020 07:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47349 * 2 1 4 4 C 1.46766 * 124.34634 * 90.00069 * 3 2 1 5 5 C 1.54480 * 105.47504 * 163.00462 * 4 3 2 6 6 H 1.08998 * 110.96857 * 267.29572 * 5 4 3 7 7 C 1.50696 * 110.97036 * 143.53023 * 5 4 3 8 8 O 1.21286 * 120.00048 * 0.02562 * 7 5 4 9 9 N 1.34777 * 120.00277 * 180.02562 * 7 5 4 10 10 C 1.46925 * 120.62888 * 0.02562 * 9 7 5 11 11 C 1.53193 * 108.77512 * 126.36496 * 10 9 7 12 12 C 1.53041 * 109.31125 * 54.63936 * 11 10 9 13 13 C 1.53043 * 109.53510 * 298.63035 * 12 11 10 14 14 H 1.08996 * 109.50201 * 301.38250 * 13 12 11 15 15 C 1.50698 * 109.49609 * 181.31718 * 13 12 11 16 16 H 1.08006 * 120.00149 * 240.00221 * 15 13 12 17 17 C 1.37875 * 120.00116 * 60.00317 * 15 13 12 18 18 N 1.31513 * 120.00183 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00304 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47155 * 89.99656 * 19 17 15 21 21 H 1.48494 * 109.47280 * 210.00186 * 19 17 15 22 22 H 1.48510 * 109.46905 * 330.00006 * 19 17 15 23 23 C 1.46923 * 120.63091 * 179.72249 * 9 7 5 24 24 C 1.54631 * 101.76379 * 25.41563 * 5 4 3 25 25 C 1.34417 * 124.35563 * 270.02479 * 3 2 1 26 26 O 1.21284 * 124.93817 * 0.40833 * 25 3 2 27 27 H 1.08993 * 109.46869 * 299.99942 * 1 2 3 28 28 H 1.09007 * 109.47099 * 59.99995 * 1 2 3 29 29 H 1.08998 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47228 * 240.00169 * 2 1 3 31 31 H 1.09002 * 109.47081 * 120.00495 * 2 1 3 32 32 H 1.09000 * 110.24445 * 282.00685 * 4 3 2 33 33 H 1.08996 * 110.24758 * 44.00415 * 4 3 2 34 34 H 1.08998 * 109.58600 * 246.15833 * 10 9 7 35 35 H 1.09007 * 109.58466 * 6.58143 * 10 9 7 36 36 H 1.08999 * 109.49599 * 174.58699 * 11 10 9 37 37 H 1.08997 * 109.49972 * 294.68367 * 11 10 9 38 38 H 1.09001 * 109.46144 * 58.64813 * 12 11 10 39 39 H 1.08995 * 109.46125 * 178.61675 * 12 11 10 40 40 H 0.97001 * 120.00517 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.58810 * 353.41948 * 23 9 7 42 42 H 1.09000 * 109.58737 * 113.84637 * 23 9 7 43 43 H 1.08997 * 110.48613 * 216.52254 * 24 5 4 44 44 H 1.09006 * 110.48585 * 93.87692 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2118 5 6 3.1741 3.3443 0.7488 6 1 4.2329 3.1038 0.8447 7 6 2.8368 4.5988 1.5125 8 8 1.9708 4.5777 2.3614 9 7 3.4976 5.7444 1.2524 10 6 4.5487 5.7859 0.2267 11 6 4.2292 6.9120 -0.7615 12 6 4.0485 8.2233 0.0066 13 6 2.8758 8.0883 0.9807 14 1 1.9698 7.8410 0.4275 15 6 2.6782 9.3903 1.7133 16 1 2.7583 9.4218 2.7900 17 6 2.3950 10.5414 1.0093 18 7 2.2978 10.5033 -0.3017 19 14 2.1492 12.1552 1.9174 20 1 3.4536 12.8529 2.0488 21 1 1.2039 13.0119 1.1575 22 1 1.5949 11.8837 3.2681 23 6 3.1758 6.9769 1.9845 24 6 2.7688 3.4757 -0.7377 25 6 2.2708 2.0965 -1.1097 26 8 2.1207 1.6948 -2.2442 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.3637 2.5303 1.6432 33 1 2.8327 1.5531 1.9382 34 1 5.5125 5.9764 0.6988 35 1 4.5807 4.8334 -0.3025 36 1 5.0495 7.0164 -1.4716 37 1 3.3106 6.6752 -1.2983 38 1 4.9588 8.4467 0.5629 39 1 3.8452 9.0309 -0.6965 40 1 2.0982 11.3131 -0.7971 41 1 2.3022 6.8102 2.6146 42 1 4.0251 7.2669 2.6030 43 1 3.6318 3.7466 -1.3459 44 1 1.9735 4.2123 -0.8526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597916176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:34 Heat of formation + Delta-G solvation = -95.081152 kcal Electronic energy + Delta-G solvation = -24626.996600 eV Core-core repulsion = 21156.980221 eV Total energy + Delta-G solvation = -3470.016378 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04115 -40.60444 -38.48508 -37.37631 -35.53750 -34.80733 -33.01392 -32.05987 -30.60171 -28.80250 -27.11572 -26.43018 -24.64776 -23.54409 -23.23406 -21.46010 -20.40650 -19.67244 -18.80894 -18.16899 -17.76967 -17.10036 -16.72708 -16.59108 -16.11165 -15.98244 -15.14365 -15.01761 -14.93041 -14.68903 -14.63190 -14.42824 -14.20388 -14.06099 -13.66205 -13.48204 -13.24864 -12.95327 -12.85438 -12.70200 -12.56798 -12.49821 -12.38585 -12.00634 -11.86824 -11.82296 -11.57278 -11.23743 -11.11560 -10.83620 -10.62851 -10.40334 -9.79040 -9.47896 -8.09777 -6.24782 1.41093 1.42746 1.43958 1.52153 1.57668 1.86688 2.15159 2.44280 3.12044 3.17095 3.32506 3.61245 3.83568 3.98435 4.11903 4.16767 4.24669 4.28824 4.40332 4.46346 4.51760 4.54488 4.59661 4.65700 4.73066 4.80365 4.87836 4.89430 4.92591 4.93851 5.02671 5.15852 5.25007 5.31627 5.50343 5.54887 5.58499 5.63149 5.95814 6.01143 6.16905 6.36202 6.55660 6.85575 7.05103 7.18035 7.43656 8.93517 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.003593 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.218038 B = 7791.880692 C = 8022.806025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.614 5.614 4 C 0.119 3.881 5 C -0.108 4.108 6 H 0.157 0.843 7 C 0.518 3.482 8 O -0.585 6.585 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.107 4.107 13 C 0.040 3.960 14 H -0.015 1.015 15 C -0.537 4.537 16 H 0.053 0.947 17 C 0.017 3.983 18 N -0.913 5.913 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.131 3.869 24 C -0.142 4.142 25 C 0.516 3.484 26 O -0.573 6.573 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.059 0.941 40 H 0.260 0.740 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.135 0.865 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -19.086 1.306 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.347 5.347 4 C -0.004 4.004 5 C -0.129 4.129 6 H 0.174 0.826 7 C 0.306 3.694 8 O -0.465 6.465 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.168 4.168 12 C -0.145 4.145 13 C 0.021 3.979 14 H 0.003 0.997 15 C -0.575 4.575 16 H 0.071 0.929 17 C -0.182 4.182 18 N -0.552 5.552 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.196 1.196 23 C 0.009 3.991 24 C -0.183 4.183 25 C 0.305 3.695 26 O -0.453 6.453 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.153 0.847 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.368 -19.282 1.035 20.042 hybrid contribution -0.740 1.594 0.241 1.774 sum 4.628 -17.688 1.276 18.328 Atomic orbital electron populations 1.22149 0.95873 1.03337 1.01295 1.21584 0.94410 0.79950 1.04461 1.48507 1.64733 1.14553 1.06865 1.22044 1.00178 0.91274 0.86856 1.22220 1.04685 0.92188 0.93837 0.82575 1.20655 0.80630 0.85141 0.82927 1.90669 1.33816 1.85741 1.36320 1.48288 1.37450 1.08918 1.38481 1.22122 0.90162 1.00607 0.88740 1.21928 1.01531 0.95338 0.98007 1.21426 0.97088 0.97184 0.98793 1.18796 0.93877 0.92035 0.93213 0.99673 1.21457 1.48477 0.94171 0.93426 0.92851 1.25674 0.94867 1.02119 0.95585 1.70008 1.49335 1.28985 1.06890 0.85635 0.78122 0.79704 0.78664 1.19710 1.21192 1.19591 1.21458 0.99754 0.83298 0.94621 1.22448 1.04770 0.95252 0.95790 1.21026 0.76446 0.87821 0.84231 1.90699 1.55903 1.76050 1.22660 0.92398 0.94846 0.89179 0.90448 0.86944 0.91043 0.86464 0.89451 0.86749 0.89314 0.93663 0.94295 0.92232 0.93040 0.92678 0.91734 0.84704 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 71.98 0.74 -2.01 16 2 C 0.12 1.81 6.65 86.38 0.57 2.39 16 3 N -0.61 -12.30 2.93 -817.98 -2.40 -14.69 16 4 C 0.12 2.19 6.71 86.83 0.58 2.77 16 5 C -0.11 -2.09 2.52 -10.48 -0.03 -2.11 16 6 H 0.16 1.81 7.80 -2.39 -0.02 1.79 16 7 C 0.52 15.52 6.98 87.66 0.61 16.13 16 8 O -0.58 -22.32 14.92 -3.05 -0.05 -22.36 16 9 N -0.60 -19.11 2.98 -819.80 -2.44 -21.55 16 10 C 0.11 2.54 6.05 86.36 0.52 3.06 16 11 C -0.13 -4.07 6.08 30.67 0.19 -3.88 16 12 C -0.11 -4.59 4.96 30.62 0.15 -4.44 16 13 C 0.04 1.94 2.24 -11.62 -0.03 1.92 16 14 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 15 C -0.54 -29.09 8.56 25.60 0.22 -28.87 16 16 H 0.05 2.85 7.75 -2.91 -0.02 2.82 16 17 C 0.02 0.91 5.30 84.65 0.45 1.36 16 18 N -0.91 -51.83 11.31 21.45 0.24 -51.59 16 19 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 C 0.13 5.37 5.63 86.21 0.48 5.86 16 24 C -0.14 -3.08 5.46 30.59 0.17 -2.91 16 25 C 0.52 13.13 8.02 87.90 0.71 13.83 16 26 O -0.57 -19.00 17.60 -3.04 -0.05 -19.06 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.31 7.93 -2.38 -0.02 1.29 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.69 6.96 -2.39 -0.02 1.67 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 1.87 4.17 -2.38 -0.01 1.86 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 3.01 6.04 -2.39 -0.01 3.00 16 40 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.05 2.50 7.01 -2.39 -0.02 2.49 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.14 2.28 6.71 -2.39 -0.02 2.26 16 44 H 0.09 2.43 7.89 -2.38 -0.02 2.41 16 Total: -1.00 -72.42 346.10 3.65 -68.77 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.98 Total: 12.22 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.34 Total: 3.09 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -4.60 Total: -87.83 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.10 Total: -41.42 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -72.42 3.65 -68.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.314 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds