Wall clock time and date at job start Tue Mar 31 2020 07:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.32879 * 2 1 4 4 O 1.44424 * 110.37872 * 122.24824 * 2 1 3 5 5 C 1.44425 * 105.27791 * 159.34062 * 4 2 1 6 6 H 1.09010 * 110.36563 * 78.32536 * 5 4 2 7 7 C 1.53001 * 110.46453 * 200.61026 * 5 4 2 8 8 C 1.54477 * 104.80558 * 319.49669 * 5 4 2 9 9 H 1.09008 * 110.50493 * 265.19153 * 8 5 4 10 10 C 1.52991 * 110.51243 * 142.62228 * 8 5 4 11 11 C 1.54478 * 110.37587 * 237.63408 * 2 1 3 12 12 H 1.09004 * 110.50707 * 335.83022 * 11 2 1 13 13 C 1.50700 * 110.51319 * 98.53914 * 11 2 1 14 14 O 1.21283 * 119.99931 * 28.97288 * 13 11 2 15 15 N 1.34778 * 120.00173 * 208.97181 * 13 11 2 16 16 C 1.46497 * 119.99983 * 174.57421 * 15 13 11 17 17 C 1.50708 * 109.46738 * 90.00608 * 16 15 13 18 18 H 1.07994 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99959 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00177 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46997 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47111 * 119.99644 * 21 19 17 24 24 H 1.48494 * 109.47123 * 240.00082 * 21 19 17 25 25 C 1.46502 * 119.99862 * 354.58420 * 15 13 11 26 26 C 1.52995 * 109.47749 * 94.78116 * 25 15 13 27 27 C 1.47196 * 109.47462 * 184.99579 * 26 25 15 28 28 N 6.42362 * 75.46984 * 227.08498 * 2 1 3 29 29 H 1.09000 * 109.46935 * 303.59820 * 1 2 3 30 30 H 1.08997 * 109.47460 * 63.60394 * 1 2 3 31 31 H 1.09002 * 109.46659 * 183.60443 * 1 2 3 32 32 H 1.09007 * 109.46753 * 175.43992 * 7 5 4 33 33 H 1.08991 * 109.47412 * 295.43856 * 7 5 4 34 34 H 1.08992 * 109.46939 * 55.44543 * 7 5 4 35 35 H 1.08996 * 109.47519 * 57.29260 * 10 8 5 36 36 H 1.08999 * 109.47319 * 177.29924 * 10 8 5 37 37 H 1.09003 * 109.47191 * 297.29188 * 10 8 5 38 38 H 1.08997 * 109.47530 * 209.99928 * 16 15 13 39 39 H 1.09001 * 109.47415 * 330.00707 * 16 15 13 40 40 H 0.97002 * 119.99668 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.46997 * 214.78121 * 25 15 13 42 42 H 1.09001 * 109.47057 * 334.77509 * 25 15 13 43 43 H 1.09003 * 109.46910 * 304.99460 * 26 25 15 44 44 H 1.09000 * 109.47045 * 64.98816 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0329 -0.7224 1.1450 5 6 3.3874 -1.0862 0.8005 6 1 4.0526 -0.2312 0.9223 7 6 3.8629 -2.2568 1.6635 8 6 3.3179 -1.5062 -0.6844 9 1 3.1981 -2.5863 -0.7706 10 6 4.5714 -1.0460 -1.4310 11 6 2.0678 -0.7752 -1.2231 12 1 1.3276 -1.4935 -1.5757 13 6 2.4482 0.1778 -2.3269 14 8 2.8180 1.3010 -2.0575 15 7 2.3773 -0.2181 -3.6132 16 6 2.6318 0.7420 -4.6901 17 6 4.0995 0.7356 -5.0322 18 1 4.7751 0.0821 -4.5004 19 6 4.5800 1.5648 -6.0235 20 7 3.7573 2.3610 -6.6708 21 14 6.3992 1.5574 -6.4471 22 1 7.1052 0.5795 -5.5808 23 1 6.5744 1.1734 -7.8709 24 1 6.9642 2.9129 -6.2269 25 6 2.0456 -1.6084 -3.9346 26 6 0.5421 -1.7278 -4.1913 27 6 0.1901 -3.1424 -4.3960 28 7 -0.0816 -4.2340 -4.5540 29 1 -0.3633 0.5687 0.8560 30 1 -0.3634 0.4569 -0.9205 31 1 -0.3633 -1.0257 0.0646 32 1 4.8542 -2.5703 1.3362 33 1 3.9066 -1.9447 2.7069 34 1 3.1667 -3.0892 1.5621 35 1 5.4555 -1.4605 -0.9467 36 1 4.5269 -1.3921 -2.4637 37 1 4.6249 0.0426 -1.4147 38 1 2.0525 0.4629 -5.5702 39 1 2.3391 1.7400 -4.3639 40 1 4.0952 2.9441 -7.3685 41 1 2.5920 -1.9154 -4.8264 42 1 2.3237 -2.2507 -3.0990 43 1 -0.0052 -1.3377 -3.3331 44 1 0.2788 -1.1554 -5.0808 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599137821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:15 Heat of formation + Delta-G solvation = -66.889256 kcal Electronic energy + Delta-G solvation = -25176.065690 eV Core-core repulsion = 21707.271804 eV Total energy + Delta-G solvation = -3468.793886 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.68032 -38.39448 -36.86963 -35.29148 -33.69873 -33.05249 -32.43365 -30.86985 -29.37063 -27.91722 -26.60702 -24.08793 -23.77039 -22.71366 -21.34193 -20.59436 -18.31003 -17.54547 -16.75339 -16.50227 -16.13335 -15.81130 -15.42235 -15.00673 -14.73633 -14.30495 -14.09367 -13.81665 -13.40316 -13.24045 -12.89822 -12.84138 -12.48282 -12.42851 -12.33625 -12.19517 -12.01360 -11.94698 -11.80858 -11.58041 -11.39887 -11.28213 -10.99280 -10.92675 -10.89986 -10.68605 -10.53188 -10.36837 -10.20892 -9.72427 -9.62670 -8.98813 -8.50516 -7.88457 -6.11950 -4.16052 2.70381 2.79153 3.17997 3.25406 3.34050 3.36670 3.57675 3.83614 4.14966 4.38795 4.54578 4.64885 4.86906 4.91098 5.01472 5.11657 5.22623 5.23189 5.28257 5.31174 5.39067 5.41173 5.48222 5.55877 5.56128 5.67606 5.79426 5.86798 5.94123 6.00307 6.03606 6.07458 6.12551 6.21272 6.25072 6.57289 6.87054 6.95900 7.30746 7.39052 7.55230 7.84320 8.13759 8.20888 8.79527 8.94186 9.49560 10.96285 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.005810 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.499398 B = 4817.806299 C = 5909.905669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 H 0.090 0.910 4 O -0.371 6.371 5 C 0.076 3.924 6 H 0.072 0.928 7 C -0.144 4.144 8 C -0.103 4.103 9 H 0.086 0.914 10 C -0.159 4.159 11 C -0.146 4.146 12 H 0.097 0.903 13 C 0.525 3.475 14 O -0.529 6.529 15 N -0.595 5.595 16 C 0.245 3.755 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.116 3.884 26 C -0.052 4.052 27 C 0.216 3.784 28 N -0.445 5.445 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 -7.757 11.202 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 H 0.108 0.892 4 O -0.290 6.290 5 C 0.018 3.982 6 H 0.090 0.910 7 C -0.201 4.201 8 C -0.122 4.122 9 H 0.104 0.896 10 C -0.216 4.216 11 C -0.168 4.168 12 H 0.115 0.885 13 C 0.311 3.689 14 O -0.406 6.406 15 N -0.326 5.326 16 C 0.126 3.874 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.010 4.010 26 C -0.093 4.093 27 C -0.102 4.102 28 N -0.122 5.122 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.617 -8.672 11.137 14.851 hybrid contribution 1.192 0.440 -0.626 1.417 sum -3.425 -8.232 10.511 13.783 Atomic orbital electron populations 1.21815 0.93188 1.02563 1.02705 1.22924 0.94956 0.96490 0.82980 0.89241 1.89082 1.27019 1.74780 1.38163 1.23039 0.84882 0.97345 0.92929 0.90967 1.21794 1.01212 0.97293 0.99843 1.22462 0.94630 1.00107 0.95050 0.89617 1.22048 0.95570 1.03519 1.00506 1.22944 0.99138 0.98376 0.96316 0.88489 1.19865 0.78024 0.87732 0.83237 1.90686 1.46213 1.21210 1.82441 1.48199 1.67647 1.09875 1.06869 1.19354 0.96635 0.88025 0.83349 1.21427 0.93372 1.22958 1.18580 0.92248 1.24908 0.97905 0.95116 0.96047 1.69926 1.34649 1.24617 1.24087 0.86495 0.85211 0.78013 0.78022 1.19803 1.21021 1.20916 1.21333 0.91690 0.84937 1.03079 1.19920 0.99529 0.83924 1.05944 1.29114 0.93183 0.94992 0.92879 1.81209 1.08982 1.12644 1.09368 0.91755 0.90969 0.91971 0.91167 0.92006 0.91913 0.92553 0.91325 0.90517 0.94718 0.93713 0.92745 0.88779 0.90607 0.87513 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.52 37.16 0.35 -1.27 16 2 C 0.08 1.16 3.42 -25.96 -0.09 1.07 16 3 H 0.09 1.44 6.90 -51.92 -0.36 1.08 16 4 O -0.37 -5.19 11.04 -35.23 -0.39 -5.58 16 5 C 0.08 0.95 3.47 -25.96 -0.09 0.86 16 6 H 0.07 0.97 7.87 -51.92 -0.41 0.56 16 7 C -0.14 -1.43 9.52 37.16 0.35 -1.08 16 8 C -0.10 -1.31 2.89 -89.06 -0.26 -1.57 16 9 H 0.09 0.94 7.87 -51.92 -0.41 0.54 16 10 C -0.16 -2.32 7.99 37.15 0.30 -2.02 16 11 C -0.15 -1.98 2.07 -90.21 -0.19 -2.16 16 12 H 0.10 1.10 5.79 -51.93 -0.30 0.80 16 13 C 0.52 9.22 4.71 -10.98 -0.05 9.17 16 14 O -0.53 -11.65 14.38 5.56 0.08 -11.57 16 15 N -0.59 -10.36 2.36 -175.06 -0.41 -10.77 16 16 C 0.25 5.56 5.14 -5.19 -0.03 5.53 16 17 C -0.52 -13.48 9.39 -34.44 -0.32 -13.81 16 18 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 21 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.12 1.51 4.91 -4.04 -0.02 1.49 16 26 C -0.05 -0.53 5.84 -29.52 -0.17 -0.71 16 27 C 0.22 2.58 15.43 -20.76 -0.32 2.26 16 28 N -0.44 -6.45 18.54 42.15 0.78 -5.67 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.07 7.82 -51.93 -0.41 0.67 16 37 H 0.08 1.36 6.45 -51.93 -0.34 1.03 16 38 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 42 H 0.08 0.86 6.18 -51.93 -0.32 0.54 16 43 H 0.11 0.92 7.57 -51.93 -0.39 0.53 16 44 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -31.10 361.62 -6.49 -37.59 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.09 Total: -0.37 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.63 Total: -0.66 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 1.10 Total: -40.70 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.31 Total: -17.15 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.10 -6.49 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599137821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.295 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds