Wall clock time and date at job start Tue Mar 31 2020 07:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.32879 * 2 1 4 4 O 1.44424 * 110.37872 * 122.24824 * 2 1 3 5 5 C 1.44425 * 105.27791 * 159.34062 * 4 2 1 6 6 H 1.09010 * 110.36563 * 78.32536 * 5 4 2 7 7 C 1.53001 * 110.46453 * 200.61026 * 5 4 2 8 8 C 1.54477 * 104.80558 * 319.49669 * 5 4 2 9 9 H 1.09008 * 110.50493 * 265.19153 * 8 5 4 10 10 C 1.52991 * 110.51243 * 142.62228 * 8 5 4 11 11 C 1.54478 * 110.37587 * 237.63408 * 2 1 3 12 12 H 1.09004 * 110.50707 * 335.83022 * 11 2 1 13 13 C 1.50700 * 110.51319 * 98.53914 * 11 2 1 14 14 O 1.21283 * 119.99931 * 28.97288 * 13 11 2 15 15 N 1.34778 * 120.00173 * 208.97181 * 13 11 2 16 16 C 1.46497 * 119.99983 * 174.57421 * 15 13 11 17 17 C 1.50708 * 109.46738 * 90.00608 * 16 15 13 18 18 H 1.07994 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99959 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00177 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46997 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47111 * 119.99644 * 21 19 17 24 24 H 1.48494 * 109.47123 * 240.00082 * 21 19 17 25 25 C 1.46502 * 119.99862 * 354.58420 * 15 13 11 26 26 C 1.52995 * 109.47749 * 94.78116 * 25 15 13 27 27 C 1.47196 * 109.47462 * 184.99579 * 26 25 15 28 28 N 6.42362 * 75.46984 * 227.08498 * 2 1 3 29 29 H 1.09000 * 109.46935 * 303.59820 * 1 2 3 30 30 H 1.08997 * 109.47460 * 63.60394 * 1 2 3 31 31 H 1.09002 * 109.46659 * 183.60443 * 1 2 3 32 32 H 1.09007 * 109.46753 * 175.43992 * 7 5 4 33 33 H 1.08991 * 109.47412 * 295.43856 * 7 5 4 34 34 H 1.08992 * 109.46939 * 55.44543 * 7 5 4 35 35 H 1.08996 * 109.47519 * 57.29260 * 10 8 5 36 36 H 1.08999 * 109.47319 * 177.29924 * 10 8 5 37 37 H 1.09003 * 109.47191 * 297.29188 * 10 8 5 38 38 H 1.08997 * 109.47530 * 209.99928 * 16 15 13 39 39 H 1.09001 * 109.47415 * 330.00707 * 16 15 13 40 40 H 0.97002 * 119.99668 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.46997 * 214.78121 * 25 15 13 42 42 H 1.09001 * 109.47057 * 334.77509 * 25 15 13 43 43 H 1.09003 * 109.46910 * 304.99460 * 26 25 15 44 44 H 1.09000 * 109.47045 * 64.98816 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0329 -0.7224 1.1450 5 6 3.3874 -1.0862 0.8005 6 1 4.0526 -0.2312 0.9223 7 6 3.8629 -2.2568 1.6635 8 6 3.3179 -1.5062 -0.6844 9 1 3.1981 -2.5863 -0.7706 10 6 4.5714 -1.0460 -1.4310 11 6 2.0678 -0.7752 -1.2231 12 1 1.3276 -1.4935 -1.5757 13 6 2.4482 0.1778 -2.3269 14 8 2.8180 1.3010 -2.0575 15 7 2.3773 -0.2181 -3.6132 16 6 2.6318 0.7420 -4.6901 17 6 4.0995 0.7356 -5.0322 18 1 4.7751 0.0821 -4.5004 19 6 4.5800 1.5648 -6.0235 20 7 3.7573 2.3610 -6.6708 21 14 6.3992 1.5574 -6.4471 22 1 7.1052 0.5795 -5.5808 23 1 6.5744 1.1734 -7.8709 24 1 6.9642 2.9129 -6.2269 25 6 2.0456 -1.6084 -3.9346 26 6 0.5421 -1.7278 -4.1913 27 6 0.1901 -3.1424 -4.3960 28 7 -0.0816 -4.2340 -4.5540 29 1 -0.3633 0.5687 0.8560 30 1 -0.3634 0.4569 -0.9205 31 1 -0.3633 -1.0257 0.0646 32 1 4.8542 -2.5703 1.3362 33 1 3.9066 -1.9447 2.7069 34 1 3.1667 -3.0892 1.5621 35 1 5.4555 -1.4605 -0.9467 36 1 4.5269 -1.3921 -2.4637 37 1 4.6249 0.0426 -1.4147 38 1 2.0525 0.4629 -5.5702 39 1 2.3391 1.7400 -4.3639 40 1 4.0952 2.9441 -7.3685 41 1 2.5920 -1.9154 -4.8264 42 1 2.3237 -2.2507 -3.0990 43 1 -0.0052 -1.3377 -3.3331 44 1 0.2788 -1.1554 -5.0808 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599137821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:15 Heat of formation + Delta-G solvation = -85.544404 kcal Electronic energy + Delta-G solvation = -25176.874637 eV Core-core repulsion = 21707.271804 eV Total energy + Delta-G solvation = -3469.602834 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89611 -39.65489 -37.97954 -36.68124 -34.99718 -34.61708 -33.62292 -32.13882 -30.28702 -29.48824 -27.94727 -25.38824 -25.21276 -23.88447 -22.48177 -21.76692 -19.60362 -18.75678 -18.27548 -18.00121 -17.41561 -16.89827 -16.59277 -16.55297 -15.87998 -15.59437 -15.50811 -14.96036 -14.46512 -14.38065 -14.32856 -13.92721 -13.75984 -13.56543 -13.52898 -13.32300 -13.19520 -13.08506 -12.91808 -12.77645 -12.70714 -12.62042 -12.53772 -12.43279 -12.15391 -11.98646 -11.88332 -11.61451 -11.57112 -11.39597 -10.73339 -10.57168 -10.44538 -9.45789 -8.16045 -6.26563 1.38691 1.41887 1.51246 1.67289 1.84847 1.85361 2.25609 2.44927 2.81851 3.11442 3.16991 3.50113 3.60736 3.72751 3.87036 4.03132 4.11886 4.19261 4.22949 4.39334 4.42658 4.48041 4.52717 4.56156 4.66436 4.72460 4.84314 4.88104 4.98273 5.04954 5.05650 5.08581 5.15275 5.18323 5.27736 5.33915 5.36560 5.37380 5.65068 5.88687 5.91993 6.15957 6.61051 6.74667 6.84384 7.36423 7.52369 8.90871 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.005810 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.499398 B = 4817.806299 C = 5909.905669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.055 0.945 4 O -0.376 6.376 5 C 0.071 3.929 6 H 0.053 0.947 7 C -0.138 4.138 8 C -0.099 4.099 9 H 0.118 0.882 10 C -0.153 4.153 11 C -0.136 4.136 12 H 0.131 0.869 13 C 0.525 3.475 14 O -0.582 6.582 15 N -0.594 5.594 16 C 0.260 3.740 17 C -0.530 4.530 18 H 0.055 0.945 19 C 0.012 3.988 20 N -0.926 5.926 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.287 1.287 25 C 0.111 3.889 26 C -0.041 4.041 27 C 0.245 3.755 28 N -0.486 5.486 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.003 0.997 40 H 0.264 0.736 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 -10.215 12.078 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.073 0.927 4 O -0.296 6.296 5 C 0.013 3.987 6 H 0.071 0.929 7 C -0.195 4.195 8 C -0.118 4.118 9 H 0.136 0.864 10 C -0.211 4.211 11 C -0.158 4.158 12 H 0.149 0.851 13 C 0.314 3.686 14 O -0.462 6.462 15 N -0.323 5.323 16 C 0.140 3.860 17 C -0.569 4.569 18 H 0.073 0.927 19 C -0.187 4.187 20 N -0.567 5.567 21 Si 0.778 3.222 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.214 1.214 25 C -0.013 4.013 26 C -0.082 4.082 27 C -0.072 4.072 28 N -0.164 5.164 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.152 0.848 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.947 -11.180 12.018 17.144 hybrid contribution 1.324 1.260 -0.863 2.022 sum -3.623 -9.919 11.156 15.362 Atomic orbital electron populations 1.21819 0.90910 1.03971 1.03183 1.22886 0.96717 0.94884 0.83139 0.92652 1.89085 1.27587 1.74562 1.38317 1.23146 0.84158 0.97896 0.93496 0.92857 1.21790 1.02146 0.96186 0.99425 1.22533 0.92974 1.01614 0.94648 0.86375 1.21950 0.97838 1.00849 1.00434 1.22957 1.00471 0.97844 0.94511 0.85138 1.20537 0.76686 0.87595 0.83798 1.90667 1.48463 1.23868 1.83243 1.48043 1.67516 1.10935 1.05842 1.18823 0.95049 0.87531 0.84645 1.21751 0.94884 1.22327 1.17951 0.92720 1.25662 1.01672 0.95046 0.96331 1.70024 1.36306 1.25515 1.24817 0.85600 0.80750 0.77689 0.78189 1.19204 1.20009 1.21375 1.21537 0.93558 0.82369 1.03879 1.19857 0.97649 0.83174 1.07482 1.29103 0.91978 0.94642 0.91516 1.81256 1.10328 1.13888 1.10905 0.91416 0.90527 0.89960 0.89653 0.91707 0.90852 0.90408 0.92470 0.94559 0.94473 0.97903 0.92718 0.89479 0.88137 0.84815 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.52 71.98 0.69 -2.16 16 2 C 0.08 2.17 3.42 31.10 0.11 2.28 16 3 H 0.06 1.86 6.90 -2.38 -0.02 1.84 16 4 O -0.38 -9.85 11.04 -148.98 -1.64 -11.50 16 5 C 0.07 1.65 3.47 31.10 0.11 1.76 16 6 H 0.05 1.43 7.87 -2.38 -0.02 1.42 16 7 C -0.14 -2.32 9.52 71.98 0.69 -1.63 16 8 C -0.10 -2.27 2.89 -9.78 -0.03 -2.30 16 9 H 0.12 2.04 7.87 -2.38 -0.02 2.02 16 10 C -0.15 -4.34 7.99 71.98 0.58 -3.76 16 11 C -0.14 -3.43 2.07 -10.53 -0.02 -3.45 16 12 H 0.13 2.39 5.79 -2.39 -0.01 2.38 16 13 C 0.52 18.45 4.71 87.66 0.41 18.87 16 14 O -0.58 -26.92 14.38 -3.04 -0.04 -26.96 16 15 N -0.59 -20.42 2.36 -826.15 -1.95 -22.37 16 16 C 0.26 12.10 5.14 85.64 0.44 12.54 16 17 C -0.53 -27.75 9.39 25.60 0.24 -27.51 16 18 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 19 C 0.01 0.64 5.46 84.65 0.46 1.10 16 20 N -0.93 -52.85 13.29 21.45 0.28 -52.57 16 21 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 C 0.11 2.64 4.91 86.38 0.42 3.07 16 26 C -0.04 -0.71 5.84 28.79 0.17 -0.55 16 27 C 0.24 5.11 15.43 89.44 1.38 6.49 16 28 N -0.49 -12.96 18.54 20.00 0.37 -12.59 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.72 7.82 -2.39 -0.02 1.71 16 37 H 0.04 1.32 6.45 -2.39 -0.02 1.30 16 38 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 39 H 0.00 0.16 7.50 -2.39 -0.02 0.14 16 40 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.09 2.24 8.11 -2.39 -0.02 2.22 16 42 H 0.10 1.92 6.18 -2.39 -0.01 1.90 16 43 H 0.13 1.74 7.57 -2.39 -0.02 1.72 16 44 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.54 361.62 5.66 -64.88 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.98 Total: 11.22 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.64 Total: 4.75 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -1.30 Total: -87.53 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.69 Total: -38.46 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.54 5.66 -64.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599137821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.669 kcal (2) G-P(sol) polarization free energy of solvation -70.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds