Wall clock time and date at job start Tue Mar 31 2020 07:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.33181 * 2 1 4 4 O 1.44419 * 110.37436 * 122.37264 * 2 1 3 5 5 C 1.44426 * 105.27866 * 159.34175 * 4 2 1 6 6 H 1.09003 * 110.46377 * 78.36305 * 5 4 2 7 7 C 1.52994 * 110.37327 * 200.65620 * 5 4 2 8 8 C 1.54476 * 104.80019 * 319.49137 * 5 4 2 9 9 H 1.09005 * 110.51273 * 265.33065 * 8 5 4 10 10 C 1.52997 * 110.51233 * 142.76213 * 8 5 4 11 11 C 1.54479 * 110.37046 * 237.75278 * 2 1 3 12 12 H 1.09002 * 110.63052 * 98.48884 * 11 2 1 13 13 C 1.50700 * 110.51218 * 335.83736 * 11 2 1 14 14 O 1.21280 * 119.99589 * 280.86279 * 13 11 2 15 15 N 1.34773 * 120.00526 * 100.86713 * 13 11 2 16 16 C 1.46497 * 119.99985 * 184.90178 * 15 13 11 17 17 C 1.50692 * 109.47253 * 90.00112 * 16 15 13 18 18 H 1.08005 * 120.00130 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00215 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99885 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00167 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46882 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46790 * 119.99709 * 21 19 17 24 24 H 1.48502 * 109.47049 * 239.99641 * 21 19 17 25 25 C 1.46504 * 119.99669 * 4.90053 * 15 13 11 26 26 C 1.52992 * 109.47251 * 85.35955 * 25 15 13 27 27 C 1.47204 * 109.47189 * 179.97438 * 26 25 15 28 28 N 6.19054 * 94.85391 * 286.02891 * 2 1 3 29 29 H 1.08994 * 109.47037 * 188.00931 * 1 2 3 30 30 H 1.09003 * 109.46783 * 308.01183 * 1 2 3 31 31 H 1.09007 * 109.47040 * 68.00944 * 1 2 3 32 32 H 1.09003 * 109.47090 * 175.38106 * 7 5 4 33 33 H 1.08995 * 109.47337 * 55.38245 * 7 5 4 34 34 H 1.09004 * 109.47346 * 295.37998 * 7 5 4 35 35 H 1.08994 * 109.47497 * 61.45256 * 10 8 5 36 36 H 1.08997 * 109.47350 * 181.45190 * 10 8 5 37 37 H 1.09003 * 109.46767 * 301.44573 * 10 8 5 38 38 H 1.09000 * 109.46842 * 209.99707 * 16 15 13 39 39 H 1.08998 * 109.47114 * 329.99372 * 16 15 13 40 40 H 0.97000 * 120.00165 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.47013 * 205.35833 * 25 15 13 42 42 H 1.08999 * 109.46875 * 325.35460 * 25 15 13 43 43 H 1.09002 * 109.47012 * 299.99878 * 26 25 15 44 44 H 1.08999 * 109.47586 * 59.99940 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0328 -0.7249 1.1434 5 6 3.3874 -1.0880 0.7983 6 1 4.0541 -0.2345 0.9220 7 6 3.8602 -2.2612 1.6591 8 6 3.3178 -1.5049 -0.6876 9 1 3.1955 -2.5844 -0.7761 10 6 4.5730 -1.0461 -1.4325 11 6 2.0678 -0.7727 -1.2248 12 1 2.3426 -0.0835 -2.0233 13 6 1.0443 -1.7647 -1.7143 14 8 0.9045 -2.8244 -1.1413 15 7 0.2845 -1.4743 -2.7889 16 6 -0.7827 -2.3897 -3.2003 17 6 -2.0653 -2.0105 -2.5060 18 1 -2.0835 -1.1717 -1.8258 19 6 -3.2154 -2.7343 -2.7389 20 7 -3.1933 -3.7554 -3.5675 21 14 -4.8051 -2.2646 -1.8776 22 1 -4.5655 -1.0886 -1.0031 23 1 -5.8361 -1.9263 -2.8915 24 1 -5.2774 -3.4060 -1.0532 25 6 0.5258 -0.2432 -3.5455 26 6 1.6244 -0.4884 -4.5817 27 6 1.8664 0.7484 -5.3423 28 7 2.0539 1.7032 -5.9285 29 1 -0.3633 -1.0176 0.1432 30 1 -0.3633 0.6329 0.8097 31 1 -0.3633 0.3848 -0.9530 32 1 4.8511 -2.5759 1.3317 33 1 3.1624 -3.0921 1.5556 34 1 3.9039 -1.9513 2.7032 35 1 5.4500 -1.5223 -0.9942 36 1 4.4947 -1.3259 -2.4830 37 1 4.6684 0.0367 -1.3510 38 1 -0.9210 -2.3249 -4.2796 39 1 -0.5108 -3.4099 -2.9295 40 1 -4.0026 -4.2644 -3.7317 41 1 -0.3912 0.0574 -4.0524 42 1 0.8395 0.5469 -2.8633 43 1 2.5414 -0.7889 -4.0747 44 1 1.3107 -1.2785 -5.2639 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599137822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:18 Heat of formation + Delta-G solvation = -65.225114 kcal Electronic energy + Delta-G solvation = -25239.773480 eV Core-core repulsion = 21771.051756 eV Total energy + Delta-G solvation = -3468.721723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61778 -38.32861 -36.85281 -35.23993 -33.72906 -33.04452 -32.39002 -30.87466 -29.25673 -27.96292 -26.58124 -24.10388 -23.60370 -22.82760 -21.42484 -20.35786 -18.30878 -17.59806 -16.87840 -16.49276 -16.01836 -15.69518 -15.66307 -14.75561 -14.73480 -14.31332 -13.96298 -13.72950 -13.38803 -13.24183 -13.00612 -12.80486 -12.46780 -12.41470 -12.32104 -12.24875 -11.94820 -11.89684 -11.68093 -11.51140 -11.36219 -11.23693 -11.00367 -10.90990 -10.77237 -10.62620 -10.53624 -10.51458 -10.18829 -9.68692 -9.61173 -8.90454 -8.48164 -7.83869 -6.09641 -4.14116 2.68741 2.77340 3.22504 3.27445 3.36194 3.39104 3.61215 3.91939 4.13102 4.40600 4.52552 4.73283 4.88757 4.93650 4.95491 5.11641 5.16388 5.25577 5.30459 5.32411 5.38251 5.41762 5.45070 5.48789 5.60904 5.69798 5.77886 5.82168 5.89159 5.96323 6.05286 6.13773 6.19261 6.21800 6.34280 6.64406 6.93281 7.06452 7.36526 7.43853 7.53480 7.87031 8.16565 8.25863 8.83872 8.99659 9.51756 10.98539 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.006184 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.510473 B = 4526.614186 C = 5993.627706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.093 3.907 3 H 0.071 0.929 4 O -0.360 6.360 5 C 0.078 3.922 6 H 0.065 0.935 7 C -0.146 4.146 8 C -0.111 4.111 9 H 0.100 0.900 10 C -0.143 4.143 11 C -0.148 4.148 12 H 0.098 0.902 13 C 0.525 3.475 14 O -0.525 6.525 15 N -0.598 5.598 16 C 0.244 3.756 17 C -0.527 4.527 18 H 0.061 0.939 19 C 0.063 3.937 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.115 3.885 26 C -0.052 4.052 27 C 0.216 3.784 28 N -0.444 5.444 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.192 6.680 3.600 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.089 0.911 4 O -0.279 6.279 5 C 0.020 3.980 6 H 0.082 0.918 7 C -0.203 4.203 8 C -0.130 4.130 9 H 0.118 0.882 10 C -0.201 4.201 11 C -0.170 4.170 12 H 0.116 0.884 13 C 0.311 3.689 14 O -0.400 6.400 15 N -0.329 5.329 16 C 0.126 3.874 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.139 4.139 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.011 4.011 26 C -0.094 4.094 27 C -0.102 4.102 28 N -0.121 5.121 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.134 7.313 3.148 16.223 hybrid contribution -0.971 -0.039 0.319 1.022 sum 13.164 7.274 3.466 15.434 Atomic orbital electron populations 1.21999 0.92190 1.04742 1.02556 1.22758 0.96061 0.94054 0.83613 0.91128 1.89194 1.26730 1.74346 1.37638 1.22969 0.84855 0.96842 0.93336 0.91752 1.21788 1.01162 0.97890 0.99473 1.22581 0.93124 1.02549 0.94720 0.88172 1.21838 0.96754 1.01072 1.00400 1.23010 0.96035 0.98224 0.99717 0.88418 1.19860 0.81506 0.87118 0.80387 1.90685 1.68488 1.25006 1.55845 1.48206 1.34617 1.22457 1.27638 1.19355 0.83234 0.89438 0.95410 1.21466 0.93534 1.14970 1.26622 0.92111 1.24912 0.99041 0.94807 0.95188 1.69930 1.28695 1.19037 1.35570 0.86500 0.83258 0.78573 0.79464 1.19719 1.21030 1.20911 1.21326 0.98173 0.88345 0.93258 1.19953 1.02250 0.89400 0.97759 1.29098 0.93001 0.94537 0.93535 1.81210 1.09143 1.11712 1.10063 0.90029 0.92203 0.90531 0.91477 0.91136 0.92225 0.92110 0.92143 0.92536 0.94843 0.93529 0.92755 0.88543 0.90796 0.87666 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.55 37.16 0.32 -2.21 16 2 C 0.09 1.32 3.83 -25.95 -0.10 1.22 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 O -0.36 -5.68 11.04 -35.23 -0.39 -6.07 16 5 C 0.08 0.96 3.47 -25.96 -0.09 0.87 16 6 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 7 C -0.15 -1.65 9.52 37.15 0.35 -1.30 16 8 C -0.11 -1.36 2.75 -89.06 -0.25 -1.61 16 9 H 0.10 1.47 6.79 -51.93 -0.35 1.12 16 10 C -0.14 -1.27 8.95 37.16 0.33 -0.93 16 11 C -0.15 -2.00 2.37 -90.20 -0.21 -2.21 16 12 H 0.10 1.04 4.98 -51.93 -0.26 0.78 16 13 C 0.52 9.48 4.58 -10.99 -0.05 9.43 16 14 O -0.52 -12.02 15.29 5.56 0.08 -11.93 16 15 N -0.60 -10.59 2.29 -175.07 -0.40 -10.99 16 16 C 0.24 5.66 5.18 -5.20 -0.03 5.63 16 17 C -0.53 -13.67 9.39 -34.44 -0.32 -14.00 16 18 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 21 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.12 1.50 4.67 -4.04 -0.02 1.48 16 26 C -0.05 -0.53 5.81 -29.52 -0.17 -0.70 16 27 C 0.22 2.53 15.43 -20.76 -0.32 2.21 16 28 N -0.44 -6.34 18.54 42.15 0.78 -5.56 16 29 H 0.08 1.64 7.15 -51.93 -0.37 1.27 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.18 7.10 -51.92 -0.37 0.82 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 39 H 0.05 1.25 7.36 -51.93 -0.38 0.87 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.10 1.33 8.04 -51.93 -0.42 0.91 16 42 H 0.07 0.82 5.96 -51.93 -0.31 0.51 16 43 H 0.11 0.88 7.52 -51.93 -0.39 0.49 16 44 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -32.25 361.51 -6.44 -38.69 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.03 Total: -0.55 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.65 Total: -0.52 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 1.12 Total: -41.11 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.30 Total: -18.00 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.25 -6.44 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599137822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.532 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds