Wall clock time and date at job start Tue Mar 31 2020 07:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.33181 * 2 1 4 4 O 1.44419 * 110.37436 * 122.37264 * 2 1 3 5 5 C 1.44426 * 105.27866 * 159.34175 * 4 2 1 6 6 H 1.09003 * 110.46377 * 78.36305 * 5 4 2 7 7 C 1.52994 * 110.37327 * 200.65620 * 5 4 2 8 8 C 1.54476 * 104.80019 * 319.49137 * 5 4 2 9 9 H 1.09005 * 110.51273 * 265.33065 * 8 5 4 10 10 C 1.52997 * 110.51233 * 142.76213 * 8 5 4 11 11 C 1.54479 * 110.37046 * 237.75278 * 2 1 3 12 12 H 1.09002 * 110.63052 * 98.48884 * 11 2 1 13 13 C 1.50700 * 110.51218 * 335.83736 * 11 2 1 14 14 O 1.21280 * 119.99589 * 280.86279 * 13 11 2 15 15 N 1.34773 * 120.00526 * 100.86713 * 13 11 2 16 16 C 1.46497 * 119.99985 * 184.90178 * 15 13 11 17 17 C 1.50692 * 109.47253 * 90.00112 * 16 15 13 18 18 H 1.08005 * 120.00130 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00215 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99885 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00167 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46882 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46790 * 119.99709 * 21 19 17 24 24 H 1.48502 * 109.47049 * 239.99641 * 21 19 17 25 25 C 1.46504 * 119.99669 * 4.90053 * 15 13 11 26 26 C 1.52992 * 109.47251 * 85.35955 * 25 15 13 27 27 C 1.47204 * 109.47189 * 179.97438 * 26 25 15 28 28 N 6.19054 * 94.85391 * 286.02891 * 2 1 3 29 29 H 1.08994 * 109.47037 * 188.00931 * 1 2 3 30 30 H 1.09003 * 109.46783 * 308.01183 * 1 2 3 31 31 H 1.09007 * 109.47040 * 68.00944 * 1 2 3 32 32 H 1.09003 * 109.47090 * 175.38106 * 7 5 4 33 33 H 1.08995 * 109.47337 * 55.38245 * 7 5 4 34 34 H 1.09004 * 109.47346 * 295.37998 * 7 5 4 35 35 H 1.08994 * 109.47497 * 61.45256 * 10 8 5 36 36 H 1.08997 * 109.47350 * 181.45190 * 10 8 5 37 37 H 1.09003 * 109.46767 * 301.44573 * 10 8 5 38 38 H 1.09000 * 109.46842 * 209.99707 * 16 15 13 39 39 H 1.08998 * 109.47114 * 329.99372 * 16 15 13 40 40 H 0.97000 * 120.00165 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.47013 * 205.35833 * 25 15 13 42 42 H 1.08999 * 109.46875 * 325.35460 * 25 15 13 43 43 H 1.09002 * 109.47012 * 299.99878 * 26 25 15 44 44 H 1.08999 * 109.47586 * 59.99940 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0328 -0.7249 1.1434 5 6 3.3874 -1.0880 0.7983 6 1 4.0541 -0.2345 0.9220 7 6 3.8602 -2.2612 1.6591 8 6 3.3178 -1.5049 -0.6876 9 1 3.1955 -2.5844 -0.7761 10 6 4.5730 -1.0461 -1.4325 11 6 2.0678 -0.7727 -1.2248 12 1 2.3426 -0.0835 -2.0233 13 6 1.0443 -1.7647 -1.7143 14 8 0.9045 -2.8244 -1.1413 15 7 0.2845 -1.4743 -2.7889 16 6 -0.7827 -2.3897 -3.2003 17 6 -2.0653 -2.0105 -2.5060 18 1 -2.0835 -1.1717 -1.8258 19 6 -3.2154 -2.7343 -2.7389 20 7 -3.1933 -3.7554 -3.5675 21 14 -4.8051 -2.2646 -1.8776 22 1 -4.5655 -1.0886 -1.0031 23 1 -5.8361 -1.9263 -2.8915 24 1 -5.2774 -3.4060 -1.0532 25 6 0.5258 -0.2432 -3.5455 26 6 1.6244 -0.4884 -4.5817 27 6 1.8664 0.7484 -5.3423 28 7 2.0539 1.7032 -5.9285 29 1 -0.3633 -1.0176 0.1432 30 1 -0.3633 0.6329 0.8097 31 1 -0.3633 0.3848 -0.9530 32 1 4.8511 -2.5759 1.3317 33 1 3.1624 -3.0921 1.5556 34 1 3.9039 -1.9513 2.7032 35 1 5.4500 -1.5223 -0.9942 36 1 4.4947 -1.3259 -2.4830 37 1 4.6684 0.0367 -1.3510 38 1 -0.9210 -2.3249 -4.2796 39 1 -0.5108 -3.4099 -2.9295 40 1 -4.0026 -4.2644 -3.7317 41 1 -0.3912 0.0574 -4.0524 42 1 0.8395 0.5469 -2.8633 43 1 2.5414 -0.7889 -4.0747 44 1 1.3107 -1.2785 -5.2639 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599137822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:17 Heat of formation + Delta-G solvation = -85.584770 kcal Electronic energy + Delta-G solvation = -25240.656341 eV Core-core repulsion = 21771.051756 eV Total energy + Delta-G solvation = -3469.604584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82159 -39.59714 -37.95592 -36.65521 -34.94591 -34.63584 -33.63156 -32.17133 -30.24141 -29.52381 -27.87959 -25.31352 -25.16252 -23.92530 -22.68049 -21.41116 -19.61530 -18.76748 -18.32232 -18.11129 -17.21342 -17.03892 -16.74254 -16.34807 -15.79766 -15.69003 -15.29960 -14.82625 -14.45510 -14.34802 -14.28213 -13.87521 -13.83819 -13.55747 -13.53365 -13.29535 -13.26646 -13.11039 -12.93254 -12.78475 -12.67675 -12.62626 -12.51863 -12.27994 -12.11489 -11.91773 -11.80483 -11.61647 -11.53215 -11.45733 -10.67118 -10.58135 -10.36153 -9.43831 -8.16966 -6.28098 1.37860 1.41225 1.50875 1.67728 1.84717 1.88515 2.29280 2.44994 2.90592 3.09492 3.15831 3.49728 3.66815 3.85919 3.95003 4.01366 4.12282 4.21555 4.32078 4.38248 4.43032 4.49075 4.50912 4.62589 4.65594 4.72558 4.82659 4.90746 5.00622 5.00859 5.10578 5.13472 5.16704 5.23033 5.30380 5.37548 5.39545 5.46984 5.65196 5.90547 6.05279 6.15072 6.61114 6.77664 6.84642 7.36922 7.56376 8.90133 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.006184 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.510473 B = 4526.614186 C = 5993.627706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 H 0.115 0.885 4 O -0.394 6.394 5 C 0.072 3.928 6 H 0.098 0.902 7 C -0.146 4.146 8 C -0.109 4.109 9 H 0.066 0.934 10 C -0.139 4.139 11 C -0.139 4.139 12 H 0.137 0.863 13 C 0.522 3.478 14 O -0.585 6.585 15 N -0.597 5.597 16 C 0.260 3.740 17 C -0.532 4.532 18 H 0.059 0.941 19 C 0.010 3.990 20 N -0.928 5.928 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.288 1.288 25 C 0.109 3.891 26 C -0.040 4.040 27 C 0.246 3.754 28 N -0.485 5.485 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.000 1.000 40 H 0.264 0.736 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.194 9.384 3.659 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.132 0.868 4 O -0.314 6.314 5 C 0.015 3.985 6 H 0.116 0.884 7 C -0.203 4.203 8 C -0.128 4.128 9 H 0.085 0.915 10 C -0.196 4.196 11 C -0.161 4.161 12 H 0.155 0.845 13 C 0.311 3.689 14 O -0.464 6.464 15 N -0.327 5.327 16 C 0.139 3.861 17 C -0.571 4.571 18 H 0.077 0.923 19 C -0.188 4.188 20 N -0.568 5.568 21 Si 0.779 3.221 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.215 1.215 25 C -0.016 4.016 26 C -0.081 4.081 27 C -0.072 4.072 28 N -0.163 5.163 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.152 0.848 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.159 10.067 3.187 19.303 hybrid contribution -1.596 -0.935 0.342 1.881 sum 14.563 9.132 3.528 17.547 Atomic orbital electron populations 1.21942 0.94372 1.01642 1.03249 1.22951 0.94453 0.95956 0.83251 0.86790 1.89170 1.28751 1.74968 1.38534 1.23265 0.83899 0.98105 0.93243 0.88425 1.21816 1.01636 0.96701 1.00114 1.22572 0.94285 1.00541 0.95411 0.91546 1.21845 0.94895 1.02522 1.00295 1.23070 0.94822 0.97491 1.00676 0.84490 1.20720 0.81710 0.87122 0.79371 1.90659 1.70364 1.27913 1.57507 1.48059 1.33234 1.23142 1.28256 1.18788 0.83986 0.88479 0.94854 1.21800 0.94649 1.14503 1.26114 0.92285 1.25701 1.02270 0.94909 0.95967 1.70036 1.29498 1.20176 1.37096 0.85583 0.79833 0.78136 0.78596 1.19006 1.19887 1.21452 1.21573 0.99170 0.86728 0.94112 1.19869 1.02382 0.88792 0.97057 1.29053 0.91673 0.93897 0.92551 1.81259 1.10666 1.12965 1.11367 0.95195 0.90930 0.90137 0.88855 0.94481 0.91548 0.90853 0.91384 0.90291 0.94930 0.98143 0.92728 0.89330 0.87847 0.84789 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 8.55 71.98 0.62 -4.24 16 2 C 0.09 2.35 3.83 31.10 0.12 2.47 16 3 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 4 O -0.39 -11.95 11.04 -148.98 -1.64 -13.60 16 5 C 0.07 1.61 3.47 31.09 0.11 1.71 16 6 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 7 C -0.15 -3.15 9.52 71.98 0.68 -2.47 16 8 C -0.11 -2.44 2.75 -9.78 -0.03 -2.47 16 9 H 0.07 1.97 6.79 -2.38 -0.02 1.95 16 10 C -0.14 -1.81 8.95 71.98 0.64 -1.17 16 11 C -0.14 -3.42 2.37 -10.52 -0.02 -3.45 16 12 H 0.14 2.22 4.98 -2.39 -0.01 2.20 16 13 C 0.52 18.97 4.58 87.66 0.40 19.37 16 14 O -0.58 -28.37 15.29 -3.03 -0.05 -28.42 16 15 N -0.60 -21.10 2.29 -826.19 -1.89 -22.99 16 16 C 0.26 12.52 5.18 85.63 0.44 12.96 16 17 C -0.53 -28.37 9.39 25.60 0.24 -28.13 16 18 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 19 C 0.01 0.57 5.46 84.65 0.46 1.03 16 20 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 21 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 25 C 0.11 2.58 4.67 86.38 0.40 2.98 16 26 C -0.04 -0.69 5.81 28.79 0.17 -0.52 16 27 C 0.25 4.97 15.43 89.44 1.38 6.35 16 28 N -0.48 -12.64 18.54 20.01 0.37 -12.27 16 29 H 0.03 1.23 7.15 -2.39 -0.02 1.21 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.39 7.10 -2.38 -0.02 2.37 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 39 H 0.00 0.03 7.36 -2.39 -0.02 0.01 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.09 2.29 8.04 -2.39 -0.02 2.27 16 42 H 0.10 1.87 5.96 -2.39 -0.01 1.86 16 43 H 0.13 1.63 7.52 -2.39 -0.02 1.62 16 44 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -76.02 361.51 5.70 -70.32 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.98 Total: 10.46 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.62 Total: 4.44 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -1.24 Total: -89.11 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.69 Total: -42.02 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -76.02 5.70 -70.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599137822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.270 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds