Wall clock time and date at job start Tue Mar 31 2020 07:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47253 * 2 1 4 4 C 1.50699 * 109.47056 * 239.99925 * 2 1 3 5 5 H 1.08003 * 120.00212 * 335.25780 * 4 2 1 6 6 C 1.37875 * 120.00066 * 155.25332 * 4 2 1 7 7 N 1.31514 * 120.00073 * 355.15917 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 175.15380 * 6 4 2 9 9 H 1.48507 * 109.47139 * 60.00010 * 8 6 4 10 10 H 1.48501 * 109.47067 * 300.00153 * 8 6 4 11 11 H 1.48498 * 109.47444 * 180.02562 * 8 6 4 12 12 N 1.46501 * 109.47227 * 120.00017 * 2 1 3 13 13 C 1.34775 * 120.00056 * 274.99799 * 12 2 1 14 14 O 1.21275 * 120.00037 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99789 * 179.97438 * 13 12 2 16 16 C 1.53001 * 110.43180 * 180.02562 * 15 13 12 17 17 C 1.54889 * 110.75738 * 54.02873 * 16 15 13 18 18 C 1.54267 * 104.19742 * 203.74204 * 17 16 15 19 19 C 1.53879 * 106.59741 * 23.61090 * 18 17 16 20 20 C 1.54262 * 106.59872 * 359.97438 * 19 18 17 21 21 C 1.54630 * 110.48799 * 302.54322 * 15 13 12 22 22 C 1.54472 * 101.76396 * 93.88261 * 21 15 13 23 23 N 1.46761 * 105.47838 * 25.41713 * 22 21 15 24 24 C 1.34743 * 111.34623 * 343.01438 * 23 22 21 25 25 O 1.21285 * 125.12212 * 180.38752 * 24 23 22 26 26 H 1.09002 * 109.47335 * 55.03055 * 1 2 3 27 27 H 1.09002 * 109.47223 * 175.03364 * 1 2 3 28 28 H 1.08998 * 109.46902 * 295.02804 * 1 2 3 29 29 H 0.96998 * 119.99781 * 5.12502 * 7 6 4 30 30 H 0.97002 * 119.99596 * 94.99979 * 12 2 1 31 31 H 1.09000 * 110.67016 * 177.47126 * 16 15 13 32 32 H 1.08994 * 110.48638 * 322.42153 * 17 16 15 33 33 H 1.09001 * 110.48631 * 85.06750 * 17 16 15 34 34 H 1.08996 * 110.03253 * 264.32964 * 18 17 16 35 35 H 1.08996 * 110.07378 * 142.91925 * 18 17 16 36 36 H 1.09002 * 110.02920 * 240.71846 * 19 18 17 37 37 H 1.08993 * 110.07341 * 119.30772 * 19 18 17 38 38 H 1.08996 * 110.49111 * 217.71117 * 20 19 18 39 39 H 1.09005 * 110.48631 * 95.06723 * 20 19 18 40 40 H 1.09008 * 110.96881 * 212.00142 * 21 15 13 41 41 H 1.09002 * 110.96735 * 335.75889 * 21 15 13 42 42 H 1.09002 * 110.24460 * 144.41995 * 22 21 15 43 43 H 1.09004 * 110.24608 * 266.41382 * 22 21 15 44 44 H 0.96998 * 124.35671 * 162.98129 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.4114 -1.4456 -1.7209 6 6 3.2844 -0.4218 -1.7302 7 7 4.0020 0.5396 -1.1914 8 14 3.9619 -1.3965 -3.1726 9 1 3.0627 -1.2371 -4.3437 10 1 4.0449 -2.8327 -2.8042 11 1 5.3167 -0.8951 -3.5164 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6489 -0.7289 3.5877 16 6 2.7087 0.2353 4.7741 17 6 1.3392 0.9259 4.9898 18 6 1.6868 2.2309 5.7356 19 6 3.1549 2.5499 5.4023 20 6 3.6482 1.4274 4.4663 21 6 1.7460 -1.9394 3.9196 22 6 2.4874 -3.0908 3.2049 23 7 3.8889 -2.6631 3.1233 24 6 4.0099 -1.3371 3.3299 25 8 5.0541 -0.7204 3.3116 26 1 -0.3634 0.5890 -0.8421 27 1 -0.3634 -1.0238 -0.0890 28 1 -0.3633 0.4348 0.9312 29 1 3.6831 0.9957 -0.3969 30 1 2.2490 -1.6318 1.1525 31 1 3.0287 -0.2850 5.6770 32 1 0.8688 1.1477 4.0320 33 1 0.6881 0.2999 5.5999 34 1 1.5702 2.0894 6.8100 35 1 1.0419 3.0403 5.3936 36 1 3.7505 2.5631 6.3151 37 1 3.2231 3.5138 4.8982 38 1 4.6820 1.1675 4.6939 39 1 3.5506 1.7297 3.4235 40 1 1.7035 -2.1111 4.9953 41 1 0.7457 -1.8045 3.5079 42 1 2.4066 -4.0095 3.7859 43 1 2.0794 -3.2389 2.2050 44 1 4.6334 -3.2585 2.9442 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599221204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:52 Heat of formation + Delta-G solvation = -89.105075 kcal Electronic energy + Delta-G solvation = -26085.889316 eV Core-core repulsion = 22616.132079 eV Total energy + Delta-G solvation = -3469.757236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20711 -38.39026 -37.17619 -36.17578 -34.85375 -32.30268 -31.86653 -29.41587 -28.72195 -28.17561 -26.08839 -24.72837 -22.68853 -21.78963 -20.86175 -20.17741 -19.70082 -18.88466 -17.53600 -17.14852 -16.53758 -15.62537 -15.14294 -14.78987 -14.44905 -14.34867 -13.87065 -13.82820 -13.58139 -13.48018 -13.31439 -13.00994 -12.59802 -12.41341 -12.25951 -11.84523 -11.52883 -11.18571 -11.04629 -11.01993 -10.89862 -10.83517 -10.62929 -10.49570 -10.33266 -10.26044 -10.12629 -9.82753 -9.46243 -9.07138 -9.00900 -8.61536 -8.48326 -7.85897 -6.53636 -4.36296 2.71430 3.22314 3.32954 3.34324 3.50962 3.55004 4.05074 4.38876 4.41111 4.51636 4.69494 4.93377 5.07336 5.12848 5.15551 5.26555 5.40239 5.49969 5.68930 5.73107 5.75391 5.90982 5.94242 5.98675 6.04945 6.09094 6.27579 6.31934 6.33171 6.44180 6.47717 6.55927 6.74940 6.82832 6.89110 6.97253 7.03660 7.09696 7.23282 7.61501 7.85997 8.23949 8.41169 8.57458 8.73796 9.11512 9.44519 10.82684 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.006059 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.639515 B = 4619.970008 C = 4948.806271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.234 3.766 3 H 0.054 0.946 4 C -0.612 4.612 5 H 0.056 0.944 6 C 0.031 3.969 7 N -0.882 5.882 8 Si 1.068 2.932 9 H -0.285 1.285 10 H -0.287 1.287 11 H -0.281 1.281 12 N -0.700 5.700 13 C 0.520 3.480 14 O -0.535 6.535 15 C -0.113 4.113 16 C -0.053 4.053 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.121 4.121 22 C 0.097 3.903 23 N -0.735 5.735 24 C 0.535 3.465 25 O -0.507 6.507 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.279 0.721 30 H 0.383 0.617 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 -7.150 12.489 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.135 3.865 3 H 0.072 0.928 4 C -0.651 4.651 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.514 5.514 8 Si 0.896 3.104 9 H -0.211 1.211 10 H -0.213 1.213 11 H -0.206 1.206 12 N -0.349 5.349 13 C 0.304 3.696 14 O -0.414 6.414 15 C -0.120 4.120 16 C -0.073 4.073 17 C -0.165 4.165 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.028 4.028 23 N -0.392 5.392 24 C 0.320 3.680 25 O -0.381 6.381 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.217 0.783 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.446 -5.959 11.456 13.365 hybrid contribution -0.852 -0.872 0.986 1.568 sum -4.297 -6.831 12.442 14.831 Atomic orbital electron populations 1.21978 0.98392 0.99851 0.99435 1.18901 0.89943 0.95101 0.82549 0.92771 1.22076 1.03950 1.27594 1.11455 0.92592 1.26015 0.93973 0.95878 1.02065 1.70743 1.40839 1.18823 1.21037 0.83563 0.76561 0.75294 0.75030 1.21142 1.21294 1.20621 1.47875 1.63871 1.13593 1.09578 1.19729 0.78754 0.87361 0.83792 1.90545 1.51366 1.15371 1.84133 1.21751 0.94865 0.97194 0.98177 1.21718 0.97521 0.94558 0.93465 1.22716 0.95920 0.95383 1.02433 1.22002 0.96660 0.97856 0.98769 1.22060 0.95609 0.99259 0.98737 1.22510 0.97853 0.93271 1.01862 1.22715 0.99314 0.91928 1.01943 1.22142 0.81265 0.98039 1.01347 1.46208 1.09463 1.09441 1.74057 1.20429 0.90065 0.82207 0.75347 1.90751 1.32405 1.64877 1.50038 0.93031 0.94204 0.94925 0.90955 0.78305 0.90995 0.88080 0.93088 0.92967 0.92227 0.92938 0.92214 0.91870 0.89261 0.89180 0.88758 0.89837 0.90597 0.75009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.46 37.16 0.35 -2.55 16 2 C 0.23 5.71 2.28 -69.08 -0.16 5.55 16 3 H 0.05 1.54 6.11 -51.93 -0.32 1.22 16 4 C -0.61 -16.02 8.50 -34.44 -0.29 -16.31 16 5 H 0.06 1.43 7.81 -52.48 -0.41 1.02 16 6 C 0.03 0.84 5.45 -17.82 -0.10 0.74 16 7 N -0.88 -26.39 13.63 55.43 0.76 -25.64 16 8 Si 1.07 24.01 29.91 -169.99 -5.08 18.93 16 9 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.70 -14.92 4.87 -54.94 -0.27 -15.19 16 13 C 0.52 10.63 5.64 -10.99 -0.06 10.57 16 14 O -0.53 -12.27 11.22 5.56 0.06 -12.21 16 15 C -0.11 -1.84 0.33 -155.67 -0.05 -1.90 16 16 C -0.05 -0.84 2.14 -88.64 -0.19 -1.03 16 17 C -0.13 -1.88 5.59 -25.07 -0.14 -2.02 16 18 C -0.12 -1.60 6.80 -25.61 -0.17 -1.78 16 19 C -0.12 -1.81 6.80 -25.61 -0.17 -1.98 16 20 C -0.12 -2.13 4.86 -25.09 -0.12 -2.25 16 21 C -0.12 -1.40 5.81 -25.10 -0.15 -1.55 16 22 C 0.10 1.02 6.98 -3.13 -0.02 1.00 16 23 N -0.73 -9.93 6.25 -59.12 -0.37 -10.30 16 24 C 0.54 9.58 6.92 -10.72 -0.07 9.51 16 25 O -0.51 -11.14 15.97 5.55 0.09 -11.05 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.28 8.64 6.66 -40.82 -0.27 8.37 16 30 H 0.38 7.60 6.12 -40.82 -0.25 7.35 16 31 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 32 H 0.10 1.78 5.18 -51.93 -0.27 1.52 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.18 7.21 -51.93 -0.37 0.81 16 39 H 0.09 1.97 5.70 -51.93 -0.30 1.67 16 40 H 0.09 0.84 7.90 -51.92 -0.41 0.43 16 41 H 0.09 1.06 7.89 -51.93 -0.41 0.65 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.83 6.82 -51.93 -0.35 0.47 16 44 H 0.41 4.84 8.96 -40.82 -0.37 4.48 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -32.43 338.52 -7.82 -40.25 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.75 Total: 14.10 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.35 Total: -3.99 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.12 Total: -51.12 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.15 Total: -23.26 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.08 Total: 18.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.43 -7.82 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.859 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds