Wall clock time and date at job start Tue Mar 31 2020 07:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47253 * 2 1 4 4 C 1.50699 * 109.47056 * 239.99925 * 2 1 3 5 5 H 1.08003 * 120.00212 * 335.25780 * 4 2 1 6 6 C 1.37875 * 120.00066 * 155.25332 * 4 2 1 7 7 N 1.31514 * 120.00073 * 355.15917 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 175.15380 * 6 4 2 9 9 H 1.48507 * 109.47139 * 60.00010 * 8 6 4 10 10 H 1.48501 * 109.47067 * 300.00153 * 8 6 4 11 11 H 1.48498 * 109.47444 * 180.02562 * 8 6 4 12 12 N 1.46501 * 109.47227 * 120.00017 * 2 1 3 13 13 C 1.34775 * 120.00056 * 274.99799 * 12 2 1 14 14 O 1.21275 * 120.00037 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99789 * 179.97438 * 13 12 2 16 16 C 1.53001 * 110.43180 * 180.02562 * 15 13 12 17 17 C 1.54889 * 110.75738 * 54.02873 * 16 15 13 18 18 C 1.54267 * 104.19742 * 203.74204 * 17 16 15 19 19 C 1.53879 * 106.59741 * 23.61090 * 18 17 16 20 20 C 1.54262 * 106.59872 * 359.97438 * 19 18 17 21 21 C 1.54630 * 110.48799 * 302.54322 * 15 13 12 22 22 C 1.54472 * 101.76396 * 93.88261 * 21 15 13 23 23 N 1.46761 * 105.47838 * 25.41713 * 22 21 15 24 24 C 1.34743 * 111.34623 * 343.01438 * 23 22 21 25 25 O 1.21285 * 125.12212 * 180.38752 * 24 23 22 26 26 H 1.09002 * 109.47335 * 55.03055 * 1 2 3 27 27 H 1.09002 * 109.47223 * 175.03364 * 1 2 3 28 28 H 1.08998 * 109.46902 * 295.02804 * 1 2 3 29 29 H 0.96998 * 119.99781 * 5.12502 * 7 6 4 30 30 H 0.97002 * 119.99596 * 94.99979 * 12 2 1 31 31 H 1.09000 * 110.67016 * 177.47126 * 16 15 13 32 32 H 1.08994 * 110.48638 * 322.42153 * 17 16 15 33 33 H 1.09001 * 110.48631 * 85.06750 * 17 16 15 34 34 H 1.08996 * 110.03253 * 264.32964 * 18 17 16 35 35 H 1.08996 * 110.07378 * 142.91925 * 18 17 16 36 36 H 1.09002 * 110.02920 * 240.71846 * 19 18 17 37 37 H 1.08993 * 110.07341 * 119.30772 * 19 18 17 38 38 H 1.08996 * 110.49111 * 217.71117 * 20 19 18 39 39 H 1.09005 * 110.48631 * 95.06723 * 20 19 18 40 40 H 1.09008 * 110.96881 * 212.00142 * 21 15 13 41 41 H 1.09002 * 110.96735 * 335.75889 * 21 15 13 42 42 H 1.09002 * 110.24460 * 144.41995 * 22 21 15 43 43 H 1.09004 * 110.24608 * 266.41382 * 22 21 15 44 44 H 0.96998 * 124.35671 * 162.98129 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.4114 -1.4456 -1.7209 6 6 3.2844 -0.4218 -1.7302 7 7 4.0020 0.5396 -1.1914 8 14 3.9619 -1.3965 -3.1726 9 1 3.0627 -1.2371 -4.3437 10 1 4.0449 -2.8327 -2.8042 11 1 5.3167 -0.8951 -3.5164 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6489 -0.7289 3.5877 16 6 2.7087 0.2353 4.7741 17 6 1.3392 0.9259 4.9898 18 6 1.6868 2.2309 5.7356 19 6 3.1549 2.5499 5.4023 20 6 3.6482 1.4274 4.4663 21 6 1.7460 -1.9394 3.9196 22 6 2.4874 -3.0908 3.2049 23 7 3.8889 -2.6631 3.1233 24 6 4.0099 -1.3371 3.3299 25 8 5.0541 -0.7204 3.3116 26 1 -0.3634 0.5890 -0.8421 27 1 -0.3634 -1.0238 -0.0890 28 1 -0.3633 0.4348 0.9312 29 1 3.6831 0.9957 -0.3969 30 1 2.2490 -1.6318 1.1525 31 1 3.0287 -0.2850 5.6770 32 1 0.8688 1.1477 4.0320 33 1 0.6881 0.2999 5.5999 34 1 1.5702 2.0894 6.8100 35 1 1.0419 3.0403 5.3936 36 1 3.7505 2.5631 6.3151 37 1 3.2231 3.5138 4.8982 38 1 4.6820 1.1675 4.6939 39 1 3.5506 1.7297 3.4235 40 1 1.7035 -2.1111 4.9953 41 1 0.7457 -1.8045 3.5079 42 1 2.4066 -4.0095 3.7859 43 1 2.0794 -3.2389 2.2050 44 1 4.6334 -3.2585 2.9442 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599221204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:51 Heat of formation + Delta-G solvation = -113.335417 kcal Electronic energy + Delta-G solvation = -26086.940022 eV Core-core repulsion = 22616.132079 eV Total energy + Delta-G solvation = -3470.807943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.55534 -39.92328 -38.56516 -37.50913 -36.69545 -34.13431 -33.25801 -31.17993 -29.84794 -29.39265 -27.35141 -26.76215 -24.16253 -23.03471 -22.34778 -21.69551 -20.91752 -20.49134 -19.16238 -18.59056 -17.98502 -17.05121 -16.55327 -16.17022 -15.94774 -15.79085 -15.64542 -15.37726 -15.16583 -14.85737 -14.66940 -14.31503 -13.97953 -13.89849 -13.51676 -13.26591 -12.97253 -12.88685 -12.65656 -12.56377 -12.29318 -12.09524 -12.01274 -11.94497 -11.87336 -11.80188 -11.56563 -11.15275 -11.04316 -10.82264 -10.57174 -10.28670 -10.10209 -9.64586 -8.72125 -6.54684 1.28041 1.51362 1.57386 1.75093 1.77499 2.33639 2.44611 2.53949 3.20551 3.26723 3.35465 3.58478 3.84087 3.87810 3.95378 4.06463 4.23098 4.46339 4.50400 4.58622 4.64674 4.70085 4.71883 4.73169 4.75053 4.78939 4.86216 4.93092 5.00887 5.09889 5.13482 5.18812 5.24672 5.31121 5.41471 5.55069 5.64365 5.72505 5.77697 5.93046 5.97019 6.09197 6.41411 6.92655 7.15109 7.36007 7.47240 8.62335 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.006059 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.639515 B = 4619.970008 C = 4948.806271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.235 3.765 3 H 0.001 0.999 4 C -0.612 4.612 5 H 0.068 0.932 6 C -0.021 4.021 7 N -0.922 5.922 8 Si 1.116 2.884 9 H -0.265 1.265 10 H -0.259 1.259 11 H -0.295 1.295 12 N -0.699 5.699 13 C 0.514 3.486 14 O -0.566 6.566 15 C -0.110 4.110 16 C -0.051 4.051 17 C -0.122 4.122 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.113 4.113 22 C 0.093 3.907 23 N -0.720 5.720 24 C 0.521 3.479 25 O -0.563 6.563 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.254 0.746 30 H 0.392 0.608 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.075 0.925 44 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.887 -10.555 14.244 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.134 3.866 3 H 0.019 0.981 4 C -0.650 4.650 5 H 0.086 0.914 6 C -0.223 4.223 7 N -0.557 5.557 8 Si 0.936 3.064 9 H -0.190 1.190 10 H -0.184 1.184 11 H -0.222 1.222 12 N -0.349 5.349 13 C 0.300 3.700 14 O -0.446 6.446 15 C -0.117 4.117 16 C -0.070 4.070 17 C -0.159 4.159 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.030 4.030 23 N -0.375 5.375 24 C 0.306 3.694 25 O -0.441 6.441 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.227 0.773 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.145 0.855 41 H 0.120 0.880 42 H 0.152 0.848 43 H 0.093 0.907 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.411 -9.437 13.224 17.123 hybrid contribution -0.294 0.219 0.452 0.582 sum -5.705 -9.218 13.676 17.451 Atomic orbital electron populations 1.21830 0.95664 1.01285 0.99625 1.18666 0.92003 0.92463 0.83495 0.98092 1.22387 1.03680 1.26967 1.11955 0.91400 1.27504 0.94822 0.95737 1.04234 1.70907 1.42025 1.21334 1.21409 0.82986 0.75426 0.75241 0.72716 1.18972 1.18360 1.22173 1.47334 1.64529 1.13843 1.09235 1.20373 0.77864 0.87074 0.84698 1.90548 1.52299 1.16930 1.84843 1.21710 0.95174 0.98907 0.95900 1.21812 0.97375 0.93653 0.94155 1.22628 0.95509 0.96305 1.01499 1.22017 0.94982 0.97324 1.00640 1.22074 0.97339 0.97394 0.98762 1.22391 0.97981 0.96021 0.99412 1.22883 0.98505 0.89157 1.04530 1.22485 0.78804 0.99534 1.02217 1.46254 1.11440 1.08003 1.71813 1.20816 0.89838 0.83556 0.75224 1.90721 1.34297 1.66424 1.52692 0.93262 0.91842 0.94481 0.93540 0.77261 0.88048 0.91461 0.89350 0.89643 0.92752 0.90619 0.93687 0.93546 0.94484 0.85460 0.87981 0.84774 0.90724 0.73998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 9.46 71.98 0.68 -4.56 16 2 C 0.23 11.80 2.28 44.24 0.10 11.90 16 3 H 0.00 0.06 6.11 -2.39 -0.01 0.05 16 4 C -0.61 -32.21 8.50 25.60 0.22 -31.99 16 5 H 0.07 3.37 7.81 -2.91 -0.02 3.34 16 6 C -0.02 -1.19 5.45 84.65 0.46 -0.73 16 7 N -0.92 -58.14 13.63 21.45 0.29 -57.85 16 8 Si 1.12 48.23 29.91 68.60 2.05 50.28 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 12 N -0.70 -30.33 4.87 -446.11 -2.17 -32.50 16 13 C 0.51 21.61 5.64 87.66 0.49 22.10 16 14 O -0.57 -27.58 11.22 -3.01 -0.03 -27.61 16 15 C -0.11 -3.49 0.33 -52.93 -0.02 -3.51 16 16 C -0.05 -1.54 2.14 -9.51 -0.02 -1.56 16 17 C -0.12 -3.37 5.59 31.67 0.18 -3.19 16 18 C -0.11 -2.92 6.80 31.32 0.21 -2.70 16 19 C -0.12 -3.61 6.80 31.32 0.21 -3.39 16 20 C -0.12 -4.57 4.86 31.66 0.15 -4.42 16 21 C -0.11 -2.16 5.81 31.65 0.18 -1.98 16 22 C 0.09 1.56 6.98 86.83 0.61 2.16 16 23 N -0.72 -17.91 6.25 -459.38 -2.87 -20.78 16 24 C 0.52 18.58 6.92 87.85 0.61 19.19 16 25 O -0.56 -25.90 15.97 -3.04 -0.05 -25.95 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.25 17.04 6.66 -92.71 -0.62 16.43 16 30 H 0.39 15.38 6.12 -92.71 -0.57 14.82 16 31 H 0.10 2.51 8.13 -2.39 -0.02 2.49 16 32 H 0.07 2.36 5.18 -2.39 -0.01 2.35 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.85 7.21 -2.39 -0.02 1.84 16 39 H 0.04 1.78 5.70 -2.38 -0.01 1.76 16 40 H 0.13 1.57 7.90 -2.38 -0.02 1.55 16 41 H 0.10 1.87 7.89 -2.39 -0.02 1.85 16 42 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.34 6.82 -2.38 -0.02 1.32 16 44 H 0.42 9.05 8.96 -92.71 -0.83 8.22 16 Total: -1.00 -78.88 338.52 1.07 -77.82 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.22 Total: 39.27 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 4.07 Total: -2.68 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -4.75 Total: -111.12 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.08 Total: -53.56 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.05 Total: 50.28 kcal Total: -78.88 1.07 -77.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.519 kcal (2) G-P(sol) polarization free energy of solvation -78.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds