Wall clock time and date at job start Tue Mar 31 2020 07:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46955 * 2 1 4 4 C 1.50691 * 109.47338 * 239.99569 * 2 1 3 5 5 O 1.21287 * 120.00039 * 270.74650 * 4 2 1 6 6 N 1.34783 * 119.99953 * 90.74661 * 4 2 1 7 7 C 1.46499 * 119.99860 * 183.11922 * 6 4 2 8 8 C 1.50704 * 109.47265 * 270.00221 * 7 6 4 9 9 H 1.08002 * 119.99845 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00089 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99967 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99873 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47175 * 60.00506 * 12 10 8 14 14 H 1.48507 * 109.46779 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47268 * 300.00281 * 12 10 8 16 16 C 1.46494 * 120.00021 * 3.12212 * 6 4 2 17 17 C 1.53004 * 109.46832 * 266.88164 * 16 6 4 18 18 C 1.52998 * 117.49841 * 173.76418 * 17 16 6 19 19 C 1.52995 * 60.03186 * 107.50083 * 18 17 16 20 20 C 1.53002 * 109.46834 * 119.99435 * 2 1 3 21 21 H 1.09007 * 110.21134 * 179.30318 * 20 2 1 22 22 C 1.54476 * 110.24897 * 301.22861 * 20 2 1 23 23 C 1.54630 * 101.76588 * 93.58593 * 22 20 2 24 24 C 1.51282 * 104.18961 * 24.79996 * 23 22 20 25 25 O 1.21286 * 124.94083 * 163.74964 * 24 23 22 26 26 N 1.34614 * 110.15280 * 343.76764 * 24 23 22 27 27 H 1.08994 * 109.47120 * 65.80307 * 1 2 3 28 28 H 1.09004 * 109.46971 * 185.80107 * 1 2 3 29 29 H 1.08998 * 109.47391 * 305.79961 * 1 2 3 30 30 H 1.09002 * 109.47391 * 29.99805 * 7 6 4 31 31 H 1.08997 * 109.47327 * 149.99903 * 7 6 4 32 32 H 0.97002 * 120.00022 * 179.97438 * 11 10 8 33 33 H 1.08996 * 109.47088 * 146.88297 * 16 6 4 34 34 H 1.08999 * 109.47299 * 26.88022 * 16 6 4 35 35 H 1.08998 * 115.54971 * 28.09994 * 17 16 6 36 36 H 1.08998 * 117.50226 * 215.00508 * 18 17 16 37 37 H 1.09005 * 117.49633 * 359.97438 * 18 17 16 38 38 H 1.08996 * 117.50082 * 107.50218 * 19 18 17 39 39 H 1.09003 * 117.50126 * 252.52061 * 19 18 17 40 40 H 1.09004 * 110.96925 * 211.70669 * 22 20 2 41 41 H 1.09003 * 110.97061 * 335.46919 * 22 20 2 42 42 H 1.09003 * 110.48670 * 143.47524 * 23 22 20 43 43 H 1.08999 * 110.48586 * 266.12117 * 23 22 20 44 44 H 0.97009 * 124.46794 * 179.54259 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.2216 -1.9082 -1.2042 6 7 2.2714 -0.0149 -2.3598 7 6 2.6941 -0.7147 -3.5754 8 6 4.1984 -0.7994 -3.6089 9 1 4.7812 -0.3740 -2.8053 10 6 4.8306 -1.4190 -4.6660 11 7 4.1210 -1.9356 -5.6452 12 14 6.6953 -1.5233 -4.7078 13 1 7.1763 -2.2674 -3.5162 14 1 7.1238 -2.2317 -5.9406 15 1 7.2680 -0.1533 -4.7003 16 6 2.1084 1.4409 -2.3718 17 6 0.6947 1.7920 -2.8401 18 6 0.2763 3.2625 -2.7826 19 6 0.5584 2.6005 -4.1327 20 6 2.0399 -0.7211 1.2493 21 1 3.1298 -0.7390 1.2554 22 6 1.5097 -0.0250 2.5223 23 6 0.2290 -0.8399 2.8171 24 6 0.4859 -2.1821 2.1682 25 8 -0.1391 -3.1958 2.3980 26 7 1.5093 -2.0885 1.2987 27 1 -0.3633 0.4212 -0.9373 28 1 -0.3633 -1.0225 0.1039 29 1 -0.3634 0.6011 0.8335 30 1 2.2735 -1.7203 -3.5807 31 1 2.3414 -0.1688 -4.4503 32 1 4.5658 -2.3712 -6.3891 33 1 2.8366 1.8824 -3.0521 34 1 2.2660 1.8325 -1.3669 35 1 -0.0691 1.0429 -2.6318 36 1 -0.7629 3.4808 -2.5364 37 1 1.0080 3.9798 -2.4106 38 1 -0.2951 2.3832 -4.7749 39 1 1.4760 2.8820 -4.6494 40 1 2.2243 -0.1118 3.3408 41 1 1.2703 1.0199 2.3246 42 1 0.0898 -0.9562 3.8920 43 1 -0.6405 -0.3594 2.3687 44 1 1.8523 -2.8281 0.7729 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599327691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:41 Heat of formation + Delta-G solvation = -46.462092 kcal Electronic energy + Delta-G solvation = -24961.136861 eV Core-core repulsion = 21493.228764 eV Total energy + Delta-G solvation = -3467.908098 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83578 -39.05492 -37.28171 -36.50998 -34.44175 -32.87446 -32.02511 -31.13392 -27.95104 -27.58163 -26.20007 -24.19279 -22.60466 -22.21753 -20.90069 -20.72444 -20.27800 -18.31407 -17.10537 -16.82265 -16.58130 -16.35216 -15.51658 -15.13116 -14.74537 -14.52399 -14.28107 -13.88577 -13.59999 -13.46197 -13.23877 -12.79508 -12.66192 -12.44934 -12.35007 -12.13066 -11.79144 -11.44576 -11.40104 -11.38664 -11.29743 -11.11345 -10.97960 -10.86694 -10.62585 -10.31354 -10.14290 -9.80330 -9.68139 -9.66098 -8.98002 -8.73765 -8.46004 -7.74154 -6.07083 -4.12042 2.74593 3.28240 3.29979 3.33981 3.37208 3.64020 3.70562 3.95753 4.35037 4.39926 4.43700 4.63755 4.79282 4.93776 4.94437 5.00634 5.08426 5.21769 5.22994 5.27169 5.40108 5.46285 5.55008 5.60865 5.67872 5.70012 5.76991 5.81367 5.86435 5.93494 6.00422 6.04629 6.16479 6.22641 6.46684 7.01443 7.06782 7.33178 7.41485 7.49866 7.88606 8.19942 8.35695 8.48615 8.86030 9.03139 9.53021 11.00955 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.005405 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.864222 B = 5179.315800 C = 6655.491925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 H 0.101 0.899 4 C 0.512 3.488 5 O -0.539 6.539 6 N -0.590 5.590 7 C 0.248 3.752 8 C -0.526 4.526 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.140 3.860 17 C -0.168 4.168 18 C -0.181 4.181 19 C -0.175 4.175 20 C 0.147 3.853 21 H 0.091 0.909 22 C -0.127 4.127 23 C -0.161 4.161 24 C 0.514 3.486 25 O -0.548 6.548 26 N -0.704 5.704 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 12.558 12.310 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 H 0.119 0.881 4 C 0.298 3.702 5 O -0.417 6.417 6 N -0.321 5.321 7 C 0.129 3.871 8 C -0.565 4.565 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.725 3.275 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.016 3.984 17 C -0.187 4.187 18 C -0.218 4.218 19 C -0.212 4.212 20 C 0.040 3.960 21 H 0.109 0.891 22 C -0.165 4.165 23 C -0.201 4.201 24 C 0.300 3.700 25 O -0.426 6.426 26 N -0.360 5.360 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.109 11.349 12.277 18.168 hybrid contribution 1.232 -0.202 -0.628 1.397 sum -5.877 11.147 11.649 17.161 Atomic orbital electron populations 1.21907 0.92974 1.02734 1.02610 1.21876 0.98156 1.00886 0.94177 0.88087 1.20172 0.78252 0.87591 0.84196 1.90588 1.52620 1.14935 1.83527 1.48200 1.65069 1.06175 1.12614 1.19258 0.94913 0.93056 0.79848 1.21360 0.91548 1.37345 1.06245 0.92609 1.24921 0.98490 0.95155 0.95447 1.69919 1.35560 1.37729 1.10055 0.86584 0.85381 0.78145 0.77439 1.20224 1.21186 1.20289 1.21094 0.93814 0.82304 1.01226 1.22970 0.99327 0.93967 1.02431 1.22921 1.01813 0.95348 1.01741 1.23015 1.03438 1.04004 0.90710 1.21426 0.99119 0.82132 0.93358 0.89087 1.22655 0.96823 1.00036 0.96943 1.22492 0.99901 0.94901 1.02795 1.20911 0.79530 0.90049 0.79515 1.90730 1.51558 1.34868 1.65436 1.46443 1.34709 1.11999 1.42899 0.91631 0.92052 0.91529 0.94109 0.94934 0.92662 0.89893 0.90910 0.87764 0.89180 0.88854 0.89170 0.88452 0.89764 0.88987 0.88513 0.87678 0.73425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.64 37.16 0.28 -1.38 16 2 C -0.13 -1.62 1.99 -91.78 -0.18 -1.81 16 3 H 0.10 1.03 5.74 -51.93 -0.30 0.73 16 4 C 0.51 9.57 6.71 -10.99 -0.07 9.50 16 5 O -0.54 -12.35 13.98 5.55 0.08 -12.27 16 6 N -0.59 -11.49 2.46 -175.06 -0.43 -11.92 16 7 C 0.25 6.24 5.15 -5.19 -0.03 6.22 16 8 C -0.53 -14.43 9.39 -34.44 -0.32 -14.75 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 12 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 C 0.14 2.06 5.54 -4.04 -0.02 2.04 16 17 C -0.17 -2.15 5.53 -90.58 -0.50 -2.66 16 18 C -0.18 -1.80 10.25 -26.73 -0.27 -2.08 16 19 C -0.17 -2.15 10.18 -26.70 -0.27 -2.42 16 20 C 0.15 1.73 3.30 -67.01 -0.22 1.51 16 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.13 -1.00 6.22 -25.10 -0.16 -1.16 16 23 C -0.16 -1.54 6.06 -26.74 -0.16 -1.70 16 24 C 0.51 7.60 7.17 -10.77 -0.08 7.52 16 25 O -0.55 -10.47 18.03 5.55 0.10 -10.37 16 26 N -0.70 -10.41 4.71 -52.72 -0.25 -10.66 16 27 H 0.06 0.76 5.66 -51.93 -0.29 0.47 16 28 H 0.06 0.85 6.50 -51.93 -0.34 0.52 16 29 H 0.07 0.55 5.80 -51.93 -0.30 0.25 16 30 H 0.04 1.18 7.47 -51.93 -0.39 0.79 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.08 1.31 7.83 -51.93 -0.41 0.91 16 34 H 0.07 0.85 5.69 -51.93 -0.30 0.56 16 35 H 0.10 1.43 6.28 -51.93 -0.33 1.11 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.10 1.24 8.03 -51.93 -0.42 0.82 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.52 7.61 -51.93 -0.40 0.13 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.11 0.88 6.18 -51.93 -0.32 0.56 16 44 H 0.42 7.29 7.46 -40.82 -0.30 6.99 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -33.98 347.19 -8.24 -42.22 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.58 Total: 6.30 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.11 Total: 0.48 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.06 Total: -48.07 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.18 Total: -22.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.98 -8.24 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599327691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.238 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds