Wall clock time and date at job start Tue Mar 31 2020 07:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46955 * 2 1 4 4 C 1.50691 * 109.47338 * 239.99569 * 2 1 3 5 5 O 1.21287 * 120.00039 * 270.74650 * 4 2 1 6 6 N 1.34783 * 119.99953 * 90.74661 * 4 2 1 7 7 C 1.46499 * 119.99860 * 183.11922 * 6 4 2 8 8 C 1.50704 * 109.47265 * 270.00221 * 7 6 4 9 9 H 1.08002 * 119.99845 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00089 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99967 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99873 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47175 * 60.00506 * 12 10 8 14 14 H 1.48507 * 109.46779 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47268 * 300.00281 * 12 10 8 16 16 C 1.46494 * 120.00021 * 3.12212 * 6 4 2 17 17 C 1.53004 * 109.46832 * 266.88164 * 16 6 4 18 18 C 1.52998 * 117.49841 * 173.76418 * 17 16 6 19 19 C 1.52995 * 60.03186 * 107.50083 * 18 17 16 20 20 C 1.53002 * 109.46834 * 119.99435 * 2 1 3 21 21 H 1.09007 * 110.21134 * 179.30318 * 20 2 1 22 22 C 1.54476 * 110.24897 * 301.22861 * 20 2 1 23 23 C 1.54630 * 101.76588 * 93.58593 * 22 20 2 24 24 C 1.51282 * 104.18961 * 24.79996 * 23 22 20 25 25 O 1.21286 * 124.94083 * 163.74964 * 24 23 22 26 26 N 1.34614 * 110.15280 * 343.76764 * 24 23 22 27 27 H 1.08994 * 109.47120 * 65.80307 * 1 2 3 28 28 H 1.09004 * 109.46971 * 185.80107 * 1 2 3 29 29 H 1.08998 * 109.47391 * 305.79961 * 1 2 3 30 30 H 1.09002 * 109.47391 * 29.99805 * 7 6 4 31 31 H 1.08997 * 109.47327 * 149.99903 * 7 6 4 32 32 H 0.97002 * 120.00022 * 179.97438 * 11 10 8 33 33 H 1.08996 * 109.47088 * 146.88297 * 16 6 4 34 34 H 1.08999 * 109.47299 * 26.88022 * 16 6 4 35 35 H 1.08998 * 115.54971 * 28.09994 * 17 16 6 36 36 H 1.08998 * 117.50226 * 215.00508 * 18 17 16 37 37 H 1.09005 * 117.49633 * 359.97438 * 18 17 16 38 38 H 1.08996 * 117.50082 * 107.50218 * 19 18 17 39 39 H 1.09003 * 117.50126 * 252.52061 * 19 18 17 40 40 H 1.09004 * 110.96925 * 211.70669 * 22 20 2 41 41 H 1.09003 * 110.97061 * 335.46919 * 22 20 2 42 42 H 1.09003 * 110.48670 * 143.47524 * 23 22 20 43 43 H 1.08999 * 110.48586 * 266.12117 * 23 22 20 44 44 H 0.97009 * 124.46794 * 179.54259 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.2216 -1.9082 -1.2042 6 7 2.2714 -0.0149 -2.3598 7 6 2.6941 -0.7147 -3.5754 8 6 4.1984 -0.7994 -3.6089 9 1 4.7812 -0.3740 -2.8053 10 6 4.8306 -1.4190 -4.6660 11 7 4.1210 -1.9356 -5.6452 12 14 6.6953 -1.5233 -4.7078 13 1 7.1763 -2.2674 -3.5162 14 1 7.1238 -2.2317 -5.9406 15 1 7.2680 -0.1533 -4.7003 16 6 2.1084 1.4409 -2.3718 17 6 0.6947 1.7920 -2.8401 18 6 0.2763 3.2625 -2.7826 19 6 0.5584 2.6005 -4.1327 20 6 2.0399 -0.7211 1.2493 21 1 3.1298 -0.7390 1.2554 22 6 1.5097 -0.0250 2.5223 23 6 0.2290 -0.8399 2.8171 24 6 0.4859 -2.1821 2.1682 25 8 -0.1391 -3.1958 2.3980 26 7 1.5093 -2.0885 1.2987 27 1 -0.3633 0.4212 -0.9373 28 1 -0.3633 -1.0225 0.1039 29 1 -0.3634 0.6011 0.8335 30 1 2.2735 -1.7203 -3.5807 31 1 2.3414 -0.1688 -4.4503 32 1 4.5658 -2.3712 -6.3891 33 1 2.8366 1.8824 -3.0521 34 1 2.2660 1.8325 -1.3669 35 1 -0.0691 1.0429 -2.6318 36 1 -0.7629 3.4808 -2.5364 37 1 1.0080 3.9798 -2.4106 38 1 -0.2951 2.3832 -4.7749 39 1 1.4760 2.8820 -4.6494 40 1 2.2243 -0.1118 3.3408 41 1 1.2703 1.0199 2.3246 42 1 0.0898 -0.9562 3.8920 43 1 -0.6405 -0.3594 2.3687 44 1 1.8523 -2.8281 0.7729 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599327691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:40 Heat of formation + Delta-G solvation = -70.258521 kcal Electronic energy + Delta-G solvation = -24962.168752 eV Core-core repulsion = 21493.228764 eV Total energy + Delta-G solvation = -3468.939988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.94215 -40.40843 -38.39323 -37.72926 -36.05013 -34.70375 -33.36904 -31.99639 -29.75953 -28.49648 -27.59694 -25.73623 -23.96420 -23.12450 -22.03588 -21.73975 -21.32106 -19.64358 -18.64438 -18.17168 -18.01914 -17.69494 -16.87121 -16.37917 -16.19932 -15.81409 -15.66428 -15.00236 -14.79049 -14.64837 -14.35366 -14.30113 -13.98256 -13.60620 -13.45518 -13.29761 -13.05435 -12.97443 -12.72784 -12.60048 -12.46537 -12.40777 -12.25134 -12.21199 -12.03061 -11.74141 -11.65464 -11.19471 -10.92592 -10.73513 -10.64328 -10.34456 -9.97683 -9.41161 -8.22399 -6.37224 1.35119 1.39275 1.46387 1.63578 1.88569 2.27357 2.43748 2.56867 2.99352 3.07477 3.41588 3.56456 3.75208 3.85231 3.98345 4.04132 4.10706 4.22097 4.23940 4.29019 4.49550 4.51383 4.69417 4.74698 4.83859 4.87920 4.90274 4.91608 4.98435 5.05537 5.11301 5.17787 5.19584 5.24177 5.28849 5.37092 5.44807 5.58097 5.83640 5.94560 6.06762 6.23838 6.70924 6.84721 7.27504 7.31407 7.54623 8.84362 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.005405 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.864222 B = 5179.315800 C = 6655.491925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 H 0.141 0.859 4 C 0.498 3.502 5 O -0.594 6.594 6 N -0.597 5.597 7 C 0.267 3.733 8 C -0.537 4.537 9 H 0.056 0.944 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.966 3.034 13 H -0.278 1.278 14 H -0.282 1.282 15 H -0.258 1.258 16 C 0.138 3.862 17 C -0.183 4.183 18 C -0.136 4.136 19 C -0.199 4.199 20 C 0.136 3.864 21 H 0.086 0.914 22 C -0.107 4.107 23 C -0.149 4.149 24 C 0.500 3.500 25 O -0.606 6.606 26 N -0.716 5.716 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.114 0.886 30 H -0.012 1.012 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 16.703 14.882 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 H 0.159 0.841 4 C 0.288 3.712 5 O -0.475 6.475 6 N -0.326 5.326 7 C 0.146 3.854 8 C -0.576 4.576 9 H 0.074 0.926 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.790 3.210 13 H -0.204 1.204 14 H -0.207 1.207 15 H -0.182 1.182 16 C 0.016 3.984 17 C -0.202 4.202 18 C -0.173 4.173 19 C -0.236 4.236 20 C 0.030 3.970 21 H 0.105 0.895 22 C -0.145 4.145 23 C -0.189 4.189 24 C 0.289 3.711 25 O -0.488 6.488 26 N -0.368 5.368 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.133 0.867 30 H 0.006 0.994 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.152 0.848 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.897 15.593 14.870 22.624 hybrid contribution 1.145 -1.544 -1.504 2.441 sum -5.752 14.049 13.366 20.226 Atomic orbital electron populations 1.21940 0.91660 1.01667 1.04545 1.21924 0.98896 1.01834 0.90710 0.84148 1.21438 0.76977 0.87317 0.85512 1.90570 1.54666 1.17683 1.84580 1.48186 1.65005 1.08295 1.11127 1.18597 0.93793 0.90862 0.82198 1.21670 0.92650 1.37133 1.06134 0.92569 1.25863 1.03652 0.94683 0.95058 1.70059 1.37641 1.38594 1.10765 0.85497 0.79249 0.78974 0.77268 1.20352 1.20723 1.18217 1.21360 0.94718 0.78982 1.03368 1.22791 0.97910 0.96037 1.03488 1.23033 1.03518 0.92772 0.98000 1.23073 1.03141 1.05643 0.91746 1.21754 0.99106 0.80954 0.95160 0.89545 1.22753 0.95755 1.01221 0.94749 1.22549 1.01528 0.91347 1.03468 1.21966 0.78513 0.91513 0.79104 1.90684 1.53383 1.37541 1.67240 1.46739 1.34855 1.12887 1.42291 0.91838 0.95297 0.86741 0.99364 0.96566 0.92581 0.91418 0.86739 0.88858 0.87038 0.86690 0.89410 0.89558 0.87884 0.84796 0.86560 0.85728 0.75868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.64 71.98 0.55 -2.25 16 2 C -0.11 -2.53 1.99 -11.54 -0.02 -2.55 16 3 H 0.14 2.06 5.74 -2.39 -0.01 2.05 16 4 C 0.50 18.95 6.71 87.65 0.59 19.54 16 5 O -0.59 -29.01 13.98 -3.05 -0.04 -29.05 16 6 N -0.60 -23.74 2.46 -826.16 -2.03 -25.77 16 7 C 0.27 14.29 5.15 85.63 0.44 14.73 16 8 C -0.54 -30.52 9.39 25.60 0.24 -30.28 16 9 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 10 C 0.01 0.35 5.46 84.65 0.46 0.82 16 11 N -0.93 -56.87 13.29 21.44 0.28 -56.58 16 12 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 16 C 0.14 3.84 5.54 86.38 0.48 4.32 16 17 C -0.18 -4.38 5.53 -10.77 -0.06 -4.44 16 18 C -0.14 -2.15 10.25 30.59 0.31 -1.84 16 19 C -0.20 -4.69 10.18 30.62 0.31 -4.38 16 20 C 0.14 2.90 3.30 45.44 0.15 3.05 16 21 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 22 C -0.11 -1.11 6.22 31.65 0.20 -0.92 16 23 C -0.15 -2.27 6.06 30.59 0.19 -2.09 16 24 C 0.50 14.68 7.17 87.87 0.63 15.31 16 25 O -0.61 -24.09 18.03 -3.05 -0.05 -24.15 16 26 N -0.72 -21.53 4.71 -439.18 -2.07 -23.60 16 27 H 0.06 1.32 5.66 -2.39 -0.01 1.30 16 28 H 0.03 0.77 6.50 -2.38 -0.02 0.75 16 29 H 0.11 1.20 5.80 -2.39 -0.01 1.18 16 30 H -0.01 -0.74 7.47 -2.39 -0.02 -0.76 16 31 H 0.02 0.90 8.07 -2.39 -0.02 0.89 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.07 2.09 7.83 -2.39 -0.02 2.07 16 34 H 0.11 2.17 5.69 -2.39 -0.01 2.15 16 35 H 0.09 2.48 6.28 -2.39 -0.01 2.46 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.09 2.20 8.03 -2.39 -0.02 2.18 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.13 0.39 7.61 -2.39 -0.02 0.37 16 42 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.12 1.45 6.18 -2.39 -0.01 1.43 16 44 H 0.40 15.04 7.46 -92.70 -0.69 14.35 16 Total: -1.00 -83.97 347.19 2.91 -81.06 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.33 Total: 22.31 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 4.46 Total: 9.02 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.81 Total: -105.95 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.10 Total: -53.20 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -83.97 2.91 -81.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599327691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.806 kcal (2) G-P(sol) polarization free energy of solvation -83.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds