Wall clock time and date at job start Tue Mar 31 2020 07:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46865 * 2 1 4 4 C 1.50695 * 109.47133 * 239.99891 * 2 1 3 5 5 O 1.21281 * 120.00025 * 249.21523 * 4 2 1 6 6 N 1.34784 * 120.00021 * 69.49473 * 4 2 1 7 7 C 1.46494 * 119.99816 * 3.45184 * 6 4 2 8 8 C 1.50702 * 109.47359 * 83.81542 * 7 6 4 9 9 H 1.07998 * 120.00013 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00209 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99807 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00322 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47413 * 90.00440 * 12 10 8 14 14 H 1.48499 * 109.47332 * 210.00407 * 12 10 8 15 15 H 1.48504 * 109.47044 * 330.00047 * 12 10 8 16 16 C 1.46499 * 119.99900 * 183.44698 * 6 4 2 17 17 C 1.53004 * 109.46883 * 85.30354 * 16 6 4 18 18 C 1.52999 * 117.49999 * 243.61896 * 17 16 6 19 19 C 1.52999 * 60.00143 * 252.51536 * 18 17 16 20 20 C 1.52998 * 109.46771 * 119.99880 * 2 1 3 21 21 H 1.08997 * 110.21534 * 59.52806 * 20 2 1 22 22 C 1.54473 * 110.24706 * 297.49979 * 20 2 1 23 23 C 1.54626 * 101.76856 * 266.41866 * 22 20 2 24 24 C 1.51284 * 104.19448 * 335.20182 * 23 22 20 25 25 O 1.21278 * 124.94078 * 196.23107 * 24 23 22 26 26 N 1.34417 * 110.11781 * 16.25335 * 24 23 22 27 27 H 1.08995 * 109.47242 * 186.57236 * 1 2 3 28 28 H 1.08993 * 109.47041 * 306.57694 * 1 2 3 29 29 H 1.08998 * 109.46804 * 66.57213 * 1 2 3 30 30 H 1.09000 * 109.47007 * 203.81798 * 7 6 4 31 31 H 1.08997 * 109.47310 * 323.81715 * 7 6 4 32 32 H 0.96999 * 120.00268 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.47230 * 205.30248 * 16 6 4 34 34 H 1.08997 * 109.47471 * 325.30211 * 16 6 4 35 35 H 1.08997 * 115.54740 * 29.33203 * 17 16 6 36 36 H 1.09000 * 117.49654 * 359.97438 * 18 17 16 37 37 H 1.09000 * 117.49807 * 145.02007 * 18 17 16 38 38 H 1.09005 * 117.49532 * 252.51718 * 19 18 17 39 39 H 1.08999 * 117.50245 * 107.49123 * 19 18 17 40 40 H 1.08996 * 110.97074 * 24.54098 * 22 20 2 41 41 H 1.09004 * 110.97011 * 148.29922 * 22 20 2 42 42 H 1.09000 * 110.48623 * 216.52557 * 23 22 20 43 43 H 1.09002 * 110.48793 * 93.88131 * 23 22 20 44 44 H 0.97000 * 124.35737 * 180.42818 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5859 -1.7846 -1.1269 6 7 1.8715 -0.1494 -2.4454 7 6 1.2769 1.1842 -2.5634 8 6 2.3419 2.2295 -2.3534 9 1 3.3600 1.9304 -2.1525 10 6 2.0167 3.5678 -2.4187 11 7 0.7770 3.9321 -2.6639 12 14 3.3369 4.8635 -2.1590 13 1 3.9580 5.2059 -3.4637 14 1 2.7262 6.0808 -1.5671 15 1 4.3761 4.3341 -1.2398 16 6 2.2915 -0.8733 -3.6478 17 6 1.1669 -1.8073 -4.0995 18 6 1.4457 -3.3115 -4.0762 19 6 1.3655 -2.5691 -5.4115 20 6 2.0400 -0.7212 1.2493 21 1 1.6764 -1.7487 1.2657 22 6 1.5872 0.0286 2.5217 23 6 2.8020 0.9447 2.7970 24 6 3.9624 0.2292 2.1410 25 8 5.1331 0.4614 2.3565 26 7 3.5072 -0.7010 1.2840 27 1 -0.3633 -1.0209 0.1176 28 1 -0.3633 0.6124 0.8252 29 1 -0.3633 0.4086 -0.9429 30 1 0.8430 1.3019 -3.5564 31 1 0.4980 1.3027 -1.8102 32 1 0.5481 4.8736 -2.7095 33 1 2.5130 -0.1606 -4.4422 34 1 3.1835 -1.4592 -3.4263 35 1 0.1566 -1.4785 -3.8564 36 1 2.4303 -3.6357 -3.7394 37 1 0.6186 -3.9727 -3.8174 38 1 0.4856 -2.7417 -6.0313 39 1 2.2973 -2.4048 -5.9528 40 1 0.6904 0.6173 2.3292 41 1 1.4268 -0.6652 3.3470 42 1 2.9711 1.0421 3.8694 43 1 2.6519 1.9242 2.3430 44 1 4.0752 -1.2841 0.7566 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599327695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:44 Heat of formation + Delta-G solvation = -54.729149 kcal Electronic energy + Delta-G solvation = -25152.695748 eV Core-core repulsion = 21684.429164 eV Total energy + Delta-G solvation = -3468.266584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48686 -39.05951 -37.13916 -36.21202 -34.86363 -32.58074 -32.50057 -30.97642 -27.95885 -26.65711 -26.21822 -24.05945 -22.84392 -22.11841 -21.02040 -20.19188 -20.11263 -18.39236 -17.30224 -16.76368 -16.24192 -16.02725 -15.32227 -15.11878 -14.51685 -14.47891 -14.40019 -13.73601 -13.55614 -13.26734 -13.10250 -12.83035 -12.61935 -12.47214 -12.05315 -11.92186 -11.72582 -11.42918 -11.32365 -11.23892 -11.13396 -11.00221 -10.94986 -10.60684 -10.57629 -10.29813 -10.10319 -9.72963 -9.62755 -9.55885 -9.02258 -8.75236 -8.57380 -7.77647 -6.24126 -4.31083 2.91292 3.20296 3.28069 3.31505 3.38300 3.72687 3.76217 4.11148 4.29804 4.57445 4.65264 4.86664 5.01841 5.08440 5.14624 5.19680 5.23698 5.30996 5.52045 5.56348 5.69466 5.74230 5.77599 5.80212 5.83862 5.89748 6.02750 6.09417 6.12262 6.15957 6.18221 6.31970 6.39834 6.49100 6.57497 6.76018 7.14354 7.18257 7.41440 7.48875 7.71741 8.00580 8.28414 8.58902 8.74084 8.96750 9.37323 10.82091 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009170 B = 0.007806 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.843223 B = 3586.291000 C = 5577.357160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 H 0.116 0.884 4 C 0.529 3.471 5 O -0.576 6.576 6 N -0.591 5.591 7 C 0.227 3.773 8 C -0.539 4.539 9 H 0.059 0.941 10 C 0.068 3.932 11 N -0.890 5.890 12 Si 0.891 3.109 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.150 3.850 17 C -0.159 4.159 18 C -0.172 4.172 19 C -0.182 4.182 20 C 0.152 3.848 21 H 0.091 0.909 22 C -0.131 4.131 23 C -0.158 4.158 24 C 0.517 3.483 25 O -0.548 6.548 26 N -0.713 5.713 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 -8.688 4.077 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 H 0.134 0.866 4 C 0.317 3.683 5 O -0.457 6.457 6 N -0.320 5.320 7 C 0.107 3.893 8 C -0.577 4.577 9 H 0.077 0.923 10 C -0.135 4.135 11 N -0.528 5.528 12 Si 0.718 3.282 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.196 1.196 16 C 0.026 3.974 17 C -0.178 4.178 18 C -0.209 4.209 19 C -0.220 4.220 20 C 0.046 3.954 21 H 0.109 0.891 22 C -0.168 4.168 23 C -0.198 4.198 24 C 0.303 3.697 25 O -0.426 6.426 26 N -0.367 5.367 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.727 -8.855 4.268 10.513 hybrid contribution 0.777 0.752 -0.427 1.162 sum -2.951 -8.103 3.841 9.440 Atomic orbital electron populations 1.21919 0.92614 1.01754 1.04051 1.21726 0.97728 1.02719 0.92373 0.86584 1.20255 0.78447 0.84746 0.84835 1.90548 1.45165 1.23104 1.86927 1.48150 1.60301 1.19069 1.04468 1.19713 0.94193 0.76443 0.98913 1.21486 0.95534 0.90733 1.49957 0.92284 1.24894 0.95494 0.98448 0.94680 1.69910 1.17323 1.17190 1.48348 0.86592 0.81883 0.80996 0.78710 1.20491 1.20933 1.19631 1.20841 0.94836 0.94005 0.87713 1.22779 1.00944 0.93514 1.00566 1.22929 1.02802 0.94802 1.00383 1.22914 1.02890 1.05352 0.90799 1.21439 0.80016 1.00209 0.93711 0.89111 1.22735 0.98600 0.98675 0.96838 1.22357 0.94050 1.00764 1.02666 1.20914 0.89608 0.79730 0.79399 1.90713 1.19060 1.67242 1.65618 1.46292 1.08151 1.38468 1.43823 0.92776 0.91516 0.90088 0.94646 0.93149 0.92494 0.90152 0.91098 0.87981 0.88793 0.89579 0.89189 0.88967 0.88520 0.90024 0.88437 0.87471 0.74601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.48 37.16 0.32 -1.70 16 2 C -0.12 -2.00 1.69 -91.77 -0.15 -2.16 16 3 H 0.12 2.19 7.07 -51.92 -0.37 1.82 16 4 C 0.53 10.02 6.65 -10.98 -0.07 9.95 16 5 O -0.58 -11.52 14.63 5.56 0.08 -11.44 16 6 N -0.59 -11.61 2.48 -175.06 -0.43 -12.05 16 7 C 0.23 5.02 4.69 -5.20 -0.02 5.00 16 8 C -0.54 -13.51 8.58 -34.44 -0.30 -13.80 16 9 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -23.46 13.29 55.43 0.74 -22.72 16 12 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.15 2.67 5.64 -4.04 -0.02 2.65 16 17 C -0.16 -2.44 5.98 -90.62 -0.54 -2.99 16 18 C -0.17 -2.37 10.18 -26.73 -0.27 -2.65 16 19 C -0.18 -2.33 10.25 -26.73 -0.27 -2.60 16 20 C 0.15 2.12 2.54 -67.01 -0.17 1.95 16 21 H 0.09 1.21 8.03 -51.93 -0.42 0.79 16 22 C -0.13 -1.41 6.53 -25.10 -0.16 -1.58 16 23 C -0.16 -2.04 6.86 -26.74 -0.18 -2.22 16 24 C 0.52 8.91 8.43 -10.86 -0.09 8.82 16 25 O -0.55 -11.64 18.03 5.56 0.10 -11.54 16 26 N -0.71 -11.55 5.38 -52.76 -0.28 -11.84 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.77 6.47 -51.93 -0.34 0.44 16 29 H 0.08 1.28 5.41 -51.93 -0.28 1.00 16 30 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 31 H 0.05 1.11 4.35 -51.93 -0.23 0.88 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 33 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 34 H 0.07 1.30 7.25 -51.93 -0.38 0.92 16 35 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.09 1.35 8.03 -51.93 -0.42 0.94 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.10 0.92 6.07 -51.93 -0.32 0.61 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.41 7.10 8.15 -40.82 -0.33 6.77 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -29.66 354.78 -8.35 -38.01 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.83 Total: 10.45 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.05 Total: 0.32 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.02 Total: -46.61 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.18 Total: -22.98 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.66 -8.35 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599327695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.717 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds