Wall clock time and date at job start Tue Mar 31 2020 07:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46865 * 2 1 4 4 C 1.50695 * 109.47133 * 239.99891 * 2 1 3 5 5 O 1.21281 * 120.00025 * 249.21523 * 4 2 1 6 6 N 1.34784 * 120.00021 * 69.49473 * 4 2 1 7 7 C 1.46494 * 119.99816 * 3.45184 * 6 4 2 8 8 C 1.50702 * 109.47359 * 83.81542 * 7 6 4 9 9 H 1.07998 * 120.00013 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00209 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99807 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00322 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47413 * 90.00440 * 12 10 8 14 14 H 1.48499 * 109.47332 * 210.00407 * 12 10 8 15 15 H 1.48504 * 109.47044 * 330.00047 * 12 10 8 16 16 C 1.46499 * 119.99900 * 183.44698 * 6 4 2 17 17 C 1.53004 * 109.46883 * 85.30354 * 16 6 4 18 18 C 1.52999 * 117.49999 * 243.61896 * 17 16 6 19 19 C 1.52999 * 60.00143 * 252.51536 * 18 17 16 20 20 C 1.52998 * 109.46771 * 119.99880 * 2 1 3 21 21 H 1.08997 * 110.21534 * 59.52806 * 20 2 1 22 22 C 1.54473 * 110.24706 * 297.49979 * 20 2 1 23 23 C 1.54626 * 101.76856 * 266.41866 * 22 20 2 24 24 C 1.51284 * 104.19448 * 335.20182 * 23 22 20 25 25 O 1.21278 * 124.94078 * 196.23107 * 24 23 22 26 26 N 1.34417 * 110.11781 * 16.25335 * 24 23 22 27 27 H 1.08995 * 109.47242 * 186.57236 * 1 2 3 28 28 H 1.08993 * 109.47041 * 306.57694 * 1 2 3 29 29 H 1.08998 * 109.46804 * 66.57213 * 1 2 3 30 30 H 1.09000 * 109.47007 * 203.81798 * 7 6 4 31 31 H 1.08997 * 109.47310 * 323.81715 * 7 6 4 32 32 H 0.96999 * 120.00268 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.47230 * 205.30248 * 16 6 4 34 34 H 1.08997 * 109.47471 * 325.30211 * 16 6 4 35 35 H 1.08997 * 115.54740 * 29.33203 * 17 16 6 36 36 H 1.09000 * 117.49654 * 359.97438 * 18 17 16 37 37 H 1.09000 * 117.49807 * 145.02007 * 18 17 16 38 38 H 1.09005 * 117.49532 * 252.51718 * 19 18 17 39 39 H 1.08999 * 117.50245 * 107.49123 * 19 18 17 40 40 H 1.08996 * 110.97074 * 24.54098 * 22 20 2 41 41 H 1.09004 * 110.97011 * 148.29922 * 22 20 2 42 42 H 1.09000 * 110.48623 * 216.52557 * 23 22 20 43 43 H 1.09002 * 110.48793 * 93.88131 * 23 22 20 44 44 H 0.97000 * 124.35737 * 180.42818 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5859 -1.7846 -1.1269 6 7 1.8715 -0.1494 -2.4454 7 6 1.2769 1.1842 -2.5634 8 6 2.3419 2.2295 -2.3534 9 1 3.3600 1.9304 -2.1525 10 6 2.0167 3.5678 -2.4187 11 7 0.7770 3.9321 -2.6639 12 14 3.3369 4.8635 -2.1590 13 1 3.9580 5.2059 -3.4637 14 1 2.7262 6.0808 -1.5671 15 1 4.3761 4.3341 -1.2398 16 6 2.2915 -0.8733 -3.6478 17 6 1.1669 -1.8073 -4.0995 18 6 1.4457 -3.3115 -4.0762 19 6 1.3655 -2.5691 -5.4115 20 6 2.0400 -0.7212 1.2493 21 1 1.6764 -1.7487 1.2657 22 6 1.5872 0.0286 2.5217 23 6 2.8020 0.9447 2.7970 24 6 3.9624 0.2292 2.1410 25 8 5.1331 0.4614 2.3565 26 7 3.5072 -0.7010 1.2840 27 1 -0.3633 -1.0209 0.1176 28 1 -0.3633 0.6124 0.8252 29 1 -0.3633 0.4086 -0.9429 30 1 0.8430 1.3019 -3.5564 31 1 0.4980 1.3027 -1.8102 32 1 0.5481 4.8736 -2.7095 33 1 2.5130 -0.1606 -4.4422 34 1 3.1835 -1.4592 -3.4263 35 1 0.1566 -1.4785 -3.8564 36 1 2.4303 -3.6357 -3.7394 37 1 0.6186 -3.9727 -3.8174 38 1 0.4856 -2.7417 -6.0313 39 1 2.2973 -2.4048 -5.9528 40 1 0.6904 0.6173 2.3292 41 1 1.4268 -0.6652 3.3470 42 1 2.9711 1.0421 3.8694 43 1 2.6519 1.9242 2.3430 44 1 4.0752 -1.2841 0.7566 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599327695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:43 Heat of formation + Delta-G solvation = -72.834514 kcal Electronic energy + Delta-G solvation = -25153.480855 eV Core-core repulsion = 21684.429164 eV Total energy + Delta-G solvation = -3469.051692 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79448 -40.50265 -38.40197 -37.55349 -36.49785 -34.44388 -33.83156 -32.07005 -29.65853 -28.08359 -27.49480 -25.49780 -24.44391 -23.19496 -22.22451 -21.42684 -21.36015 -19.85170 -18.73368 -18.53788 -17.69597 -17.50917 -16.68307 -16.50923 -16.16114 -15.91130 -15.73631 -15.02970 -14.87157 -14.63106 -14.42804 -14.13742 -14.06373 -13.68410 -13.65742 -13.42548 -13.02318 -12.82272 -12.76267 -12.62074 -12.49523 -12.35614 -12.26806 -12.13017 -11.96381 -11.68377 -11.64519 -11.29083 -10.92269 -10.85950 -10.64995 -10.41737 -10.06196 -9.41837 -8.22070 -6.34343 1.34787 1.39580 1.47650 1.57571 1.84455 2.28353 2.42750 2.48092 2.94562 3.07637 3.41341 3.60288 3.78971 3.85145 3.89983 4.03229 4.14723 4.17290 4.35281 4.38867 4.48195 4.50119 4.68571 4.75709 4.77991 4.81174 4.86186 4.88664 4.94549 5.00987 5.02020 5.16079 5.24152 5.26473 5.28864 5.29652 5.49673 5.67667 5.84922 5.89987 6.08271 6.12130 6.59167 6.84652 7.23513 7.32251 7.45171 8.82513 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009170 B = 0.007806 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.843223 B = 3586.291000 C = 5577.357160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 H 0.088 0.912 4 C 0.520 3.480 5 O -0.588 6.588 6 N -0.597 5.597 7 C 0.243 3.757 8 C -0.545 4.545 9 H 0.037 0.963 10 C 0.034 3.966 11 N -0.909 5.909 12 Si 0.940 3.060 13 H -0.278 1.278 14 H -0.273 1.273 15 H -0.283 1.283 16 C 0.149 3.851 17 C -0.178 4.178 18 C -0.167 4.167 19 C -0.161 4.161 20 C 0.151 3.849 21 H 0.104 0.896 22 C -0.115 4.115 23 C -0.152 4.152 24 C 0.503 3.497 25 O -0.599 6.599 26 N -0.716 5.716 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.058 0.942 32 H 0.269 0.731 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 -9.203 4.977 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 H 0.106 0.894 4 C 0.310 3.690 5 O -0.471 6.471 6 N -0.326 5.326 7 C 0.123 3.877 8 C -0.583 4.583 9 H 0.056 0.944 10 C -0.167 4.167 11 N -0.548 5.548 12 Si 0.766 3.234 13 H -0.204 1.204 14 H -0.197 1.197 15 H -0.209 1.209 16 C 0.025 3.975 17 C -0.197 4.197 18 C -0.204 4.204 19 C -0.198 4.198 20 C 0.045 3.955 21 H 0.121 0.879 22 C -0.152 4.152 23 C -0.192 4.192 24 C 0.292 3.708 25 O -0.482 6.482 26 N -0.367 5.367 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.122 0.878 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.435 -9.382 5.155 12.006 hybrid contribution 1.343 0.852 -0.774 1.769 sum -4.092 -8.530 4.381 10.425 Atomic orbital electron populations 1.21889 0.90411 1.03449 1.03935 1.21738 0.99489 1.00846 0.92074 0.89360 1.20835 0.78030 0.84781 0.85350 1.90532 1.45653 1.23781 1.87131 1.48163 1.60437 1.18447 1.05559 1.19383 0.93492 0.76985 0.97867 1.21592 0.95162 0.91815 1.49763 0.94435 1.25393 0.96896 0.99764 0.94642 1.69957 1.18209 1.17671 1.48934 0.85845 0.79765 0.79514 0.78267 1.20366 1.19743 1.20886 1.20866 0.95627 0.94012 0.86961 1.22596 0.99474 0.94098 1.03548 1.22945 1.02830 0.93548 1.01054 1.23027 1.04065 1.02616 0.90084 1.21658 0.78490 1.01148 0.94172 0.87857 1.22822 0.98036 0.98526 0.95843 1.22406 0.92851 1.00334 1.03628 1.21761 0.90020 0.79715 0.79334 1.90672 1.21426 1.68735 1.67323 1.46504 1.09346 1.37830 1.43060 0.90826 0.88628 0.92414 0.96518 0.92460 0.92182 0.91156 0.92116 0.88583 0.89693 0.88135 0.87118 0.88299 0.86453 0.86804 0.85964 0.87794 0.75774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.48 71.98 0.61 -2.93 16 2 C -0.12 -3.76 1.69 -11.54 -0.02 -3.78 16 3 H 0.09 3.33 7.07 -2.38 -0.02 3.31 16 4 C 0.52 19.85 6.65 87.65 0.58 20.44 16 5 O -0.59 -23.66 14.63 -3.03 -0.04 -23.70 16 6 N -0.60 -24.02 2.48 -826.17 -2.05 -26.07 16 7 C 0.24 11.00 4.69 85.63 0.40 11.40 16 8 C -0.54 -27.91 8.58 25.60 0.22 -27.69 16 9 H 0.04 2.05 7.81 -2.91 -0.02 2.03 16 10 C 0.03 1.77 5.46 84.65 0.46 2.23 16 11 N -0.91 -47.78 13.29 21.45 0.28 -47.49 16 12 Si 0.94 42.20 29.54 68.60 2.03 44.23 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 C 0.15 5.45 5.64 86.38 0.49 5.93 16 17 C -0.18 -5.42 5.98 -10.79 -0.06 -5.48 16 18 C -0.17 -4.39 10.18 30.59 0.31 -4.08 16 19 C -0.16 -3.83 10.25 30.59 0.31 -3.52 16 20 C 0.15 3.90 2.54 45.44 0.12 4.02 16 21 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16 22 C -0.12 -2.06 6.53 31.65 0.21 -1.85 16 23 C -0.15 -3.61 6.86 30.59 0.21 -3.40 16 24 C 0.50 17.30 8.43 87.90 0.74 18.04 16 25 O -0.60 -26.12 18.03 -3.02 -0.05 -26.17 16 26 N -0.72 -23.09 5.38 -439.43 -2.37 -25.46 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 1.87 6.47 -2.39 -0.02 1.85 16 29 H 0.06 1.76 5.41 -2.39 -0.01 1.75 16 30 H 0.02 0.81 8.03 -2.39 -0.02 0.79 16 31 H 0.06 2.54 4.35 -2.39 -0.01 2.53 16 32 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 33 H 0.07 2.64 8.04 -2.39 -0.02 2.62 16 34 H 0.06 2.30 7.25 -2.39 -0.02 2.29 16 35 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.08 2.39 8.03 -2.39 -0.02 2.37 16 37 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.12 1.68 6.07 -2.39 -0.01 1.67 16 41 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.40 14.23 8.15 -92.71 -0.76 13.47 16 Total: -1.00 -65.73 354.78 2.63 -63.11 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.25 Total: 32.24 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 4.58 Total: 9.33 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.13 Total: -99.02 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -0.10 Total: -49.88 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -65.73 2.63 -63.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599327695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.729 kcal (2) G-P(sol) polarization free energy of solvation -65.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds