Wall clock time and date at job start Tue Mar 31 2020 07:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47014 * 2 1 4 4 C 1.50698 * 109.46745 * 119.99631 * 2 1 3 5 5 O 1.21278 * 120.00316 * 96.29708 * 4 2 1 6 6 N 1.34781 * 120.00060 * 276.29376 * 4 2 1 7 7 C 1.46507 * 119.99955 * 6.36689 * 6 4 2 8 8 C 1.50704 * 109.46871 * 93.38607 * 7 6 4 9 9 H 1.08002 * 119.99845 * 359.97438 * 8 7 6 10 10 C 1.37868 * 119.99812 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00149 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00114 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47290 * 59.99505 * 12 10 8 14 14 H 1.48503 * 109.47379 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47185 * 299.99698 * 12 10 8 16 16 C 1.46496 * 120.00024 * 186.36765 * 6 4 2 17 17 C 1.52998 * 109.47264 * 93.50329 * 16 6 4 18 18 C 1.52994 * 117.50033 * 242.98072 * 17 16 6 19 19 C 1.52999 * 117.50007 * 174.35567 * 17 16 6 20 20 C 1.52990 * 109.47344 * 239.99766 * 2 1 3 21 21 H 1.09007 * 110.21889 * 186.93290 * 20 2 1 22 22 C 1.54481 * 110.24801 * 64.99804 * 20 2 1 23 23 C 1.54621 * 101.80098 * 266.30965 * 22 20 2 24 24 C 1.51343 * 104.17040 * 335.24735 * 23 22 20 25 25 O 1.21274 * 124.93181 * 196.24689 * 24 23 22 26 26 N 1.34428 * 110.12575 * 16.20128 * 24 23 22 27 27 H 1.08996 * 109.47013 * 292.86059 * 1 2 3 28 28 H 1.09005 * 109.46825 * 52.85875 * 1 2 3 29 29 H 1.08996 * 109.46788 * 172.85468 * 1 2 3 30 30 H 1.08994 * 109.47121 * 213.38397 * 7 6 4 31 31 H 1.08998 * 109.46964 * 333.38499 * 7 6 4 32 32 H 0.97002 * 120.00123 * 180.02562 * 11 10 8 33 33 H 1.09004 * 109.47285 * 213.50657 * 16 6 4 34 34 H 1.09004 * 109.47222 * 333.50562 * 16 6 4 35 35 H 1.09003 * 115.55232 * 28.69056 * 17 16 6 36 36 H 1.08998 * 117.49918 * 359.97438 * 18 17 16 37 37 H 1.09000 * 117.50359 * 145.02370 * 18 17 16 38 38 H 1.08998 * 117.50084 * 214.98202 * 19 17 16 39 39 H 1.08999 * 117.49864 * 0.02562 * 19 17 16 40 40 H 1.09001 * 110.96546 * 24.45382 * 22 20 2 41 41 H 1.09003 * 110.96538 * 148.17339 * 22 20 2 42 42 H 1.09002 * 110.48394 * 93.89900 * 23 22 20 43 43 H 1.09003 * 110.48958 * 216.54119 * 23 22 20 44 44 H 0.96999 * 124.34560 * 180.46685 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3430 -1.8811 1.1706 6 7 2.1362 -0.0445 2.3978 7 6 1.6318 1.3267 2.5064 8 6 0.2155 1.3015 3.0208 9 1 -0.2613 0.3585 3.2440 10 6 -0.4719 2.4823 3.2054 11 7 0.1085 3.6306 2.9331 12 14 -2.2272 2.4513 3.8436 13 1 -2.2563 1.8063 5.1809 14 1 -2.7386 3.8411 3.9536 15 1 -3.0820 1.6817 2.9042 16 6 2.7537 -0.6919 3.5579 17 6 4.2417 -0.3392 3.6068 18 6 5.2445 -1.4859 3.4645 19 6 5.0402 -0.8124 4.8231 20 6 2.0401 -0.7212 -1.2491 21 1 3.1230 -0.8365 -1.2018 22 6 1.6408 0.0621 -2.5193 23 6 0.3124 -0.6257 -2.9105 24 6 0.4169 -2.0070 -2.3010 25 8 -0.2800 -2.9531 -2.6013 26 7 1.3950 -2.0331 -1.3792 27 1 -0.3633 0.3992 0.9469 28 1 -0.3633 0.6205 -0.8193 29 1 -0.3633 -1.0197 -0.1278 30 1 2.2590 1.8909 3.1965 31 1 1.6536 1.8006 1.5251 32 1 -0.3750 4.4614 3.0633 33 1 2.2677 -0.3441 4.4695 34 1 2.6390 -1.7727 3.4746 35 1 4.5114 0.6227 3.1708 36 1 4.8442 -2.4916 3.3365 37 1 6.1743 -1.2786 2.9348 38 1 5.8355 -0.1619 5.1870 39 1 4.5056 -1.3753 5.5882 40 1 1.4824 1.1167 -2.2935 41 1 2.3884 -0.0589 -3.3033 42 1 -0.5354 -0.0859 -2.4886 43 1 0.2221 -0.6923 -3.9947 44 1 1.6428 -2.8182 -0.8663 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599327696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:47 Heat of formation + Delta-G solvation = -54.111009 kcal Electronic energy + Delta-G solvation = -25064.304995 eV Core-core repulsion = 21596.065216 eV Total energy + Delta-G solvation = -3468.239780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68649 -39.06090 -37.16196 -36.29861 -34.84061 -32.56291 -32.01141 -31.04006 -27.91725 -27.24136 -26.45679 -23.42455 -22.97983 -22.14357 -21.18334 -20.32326 -20.01771 -18.34929 -16.99971 -16.64108 -16.51629 -16.27396 -15.53461 -15.00189 -14.60344 -14.48789 -14.37727 -13.75253 -13.59223 -13.35496 -13.02884 -12.79103 -12.53559 -12.40763 -12.09697 -11.82339 -11.60593 -11.47994 -11.32208 -11.25507 -11.09528 -10.96622 -10.93555 -10.72711 -10.56904 -10.30514 -10.15240 -9.80121 -9.63730 -9.62024 -9.04210 -8.73729 -8.60502 -7.79957 -6.26523 -4.32914 2.84785 3.19364 3.24784 3.25924 3.33369 3.71007 3.73341 4.09081 4.26516 4.53128 4.59078 4.85267 5.01911 5.06091 5.11831 5.18321 5.21098 5.28319 5.47924 5.53129 5.68288 5.72537 5.77246 5.79537 5.84695 5.94635 6.03913 6.07712 6.11531 6.20711 6.29988 6.33359 6.41990 6.54202 6.73288 6.96764 7.10111 7.13192 7.38446 7.46141 7.68281 7.97086 8.27644 8.55176 8.70407 8.93458 9.34129 10.79788 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.006910 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.903185 B = 4051.041692 C = 6177.826613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 H 0.107 0.893 4 C 0.525 3.475 5 O -0.575 6.575 6 N -0.591 5.591 7 C 0.236 3.764 8 C -0.536 4.536 9 H 0.061 0.939 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.148 3.852 17 C -0.159 4.159 18 C -0.177 4.177 19 C -0.180 4.180 20 C 0.149 3.851 21 H 0.087 0.913 22 C -0.128 4.128 23 C -0.160 4.160 24 C 0.517 3.483 25 O -0.551 6.551 26 N -0.706 5.706 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.266 0.734 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 -2.617 -5.276 9.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 H 0.125 0.875 4 C 0.313 3.687 5 O -0.456 6.456 6 N -0.320 5.320 7 C 0.116 3.884 8 C -0.575 4.575 9 H 0.079 0.921 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.720 3.280 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.024 3.976 17 C -0.178 4.178 18 C -0.214 4.214 19 C -0.217 4.217 20 C 0.042 3.958 21 H 0.105 0.895 22 C -0.166 4.166 23 C -0.200 4.200 24 C 0.304 3.696 25 O -0.430 6.430 26 N -0.361 5.361 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.819 -3.383 -5.498 9.390 hybrid contribution -0.803 0.078 0.839 1.164 sum 6.016 -3.305 -4.659 8.296 Atomic orbital electron populations 1.22028 0.92134 1.01618 1.05489 1.21699 0.99164 1.00704 0.92187 0.87534 1.20348 0.76971 0.86503 0.84860 1.90520 1.52736 1.16515 1.85833 1.48140 1.57048 1.17403 1.09388 1.19489 0.94310 0.76142 0.98451 1.21385 0.98098 0.92918 1.45076 0.92119 1.24902 0.98337 0.95252 0.95030 1.69901 1.37524 0.97579 1.47640 0.86633 0.84429 0.77204 0.79730 1.20143 1.21088 1.19969 1.20835 0.89201 0.98003 0.89538 1.22785 0.94037 0.98878 1.02113 1.22968 1.00780 0.97868 0.99812 1.22898 1.03102 1.04166 0.91577 1.21464 0.97574 0.82791 0.93963 0.89496 1.22653 0.96669 1.00674 0.96557 1.22486 1.00085 0.94862 1.02605 1.20886 0.79205 0.90057 0.79477 1.90713 1.46148 1.41143 1.64949 1.46286 1.36183 1.13245 1.40378 0.88051 0.92278 0.93215 0.94767 0.94012 0.92396 0.90159 0.90637 0.87827 0.88828 0.89528 0.89141 0.88938 0.88717 0.89997 0.87383 0.88606 0.74238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 7.77 37.16 0.29 -2.35 16 2 C -0.12 -1.83 1.67 -91.77 -0.15 -1.98 16 3 H 0.11 1.64 6.28 -51.93 -0.33 1.32 16 4 C 0.52 9.80 6.77 -10.98 -0.07 9.73 16 5 O -0.57 -11.47 14.28 5.56 0.08 -11.39 16 6 N -0.59 -11.40 2.46 -175.06 -0.43 -11.83 16 7 C 0.24 5.11 4.86 -5.19 -0.03 5.08 16 8 C -0.54 -12.96 7.16 -34.44 -0.25 -13.21 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -23.02 13.29 55.43 0.74 -22.28 16 12 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 C 0.15 2.61 5.79 -4.04 -0.02 2.59 16 17 C -0.16 -2.42 6.01 -90.62 -0.54 -2.97 16 18 C -0.18 -2.39 10.18 -26.73 -0.27 -2.66 16 19 C -0.18 -2.29 10.25 -26.73 -0.27 -2.57 16 20 C 0.15 1.98 3.07 -67.02 -0.21 1.77 16 21 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 22 C -0.13 -1.31 6.32 -25.10 -0.16 -1.47 16 23 C -0.16 -1.89 6.08 -26.72 -0.16 -2.06 16 24 C 0.52 8.23 7.16 -10.83 -0.08 8.15 16 25 O -0.55 -10.93 18.03 5.56 0.10 -10.83 16 26 N -0.71 -10.71 4.69 -52.74 -0.25 -10.95 16 27 H 0.10 2.05 5.39 -51.93 -0.28 1.77 16 28 H 0.06 0.86 5.96 -51.93 -0.31 0.55 16 29 H 0.05 0.89 6.42 -51.93 -0.33 0.55 16 30 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.04 0.91 5.73 -51.93 -0.30 0.61 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 34 H 0.08 1.37 6.98 -51.93 -0.36 1.00 16 35 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.09 0.88 7.86 -51.93 -0.41 0.47 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 1.25 6.25 -51.93 -0.32 0.93 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.42 6.81 7.84 -40.82 -0.32 6.49 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -28.58 348.19 -8.29 -36.86 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.72 Total: 10.75 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.03 Total: -0.34 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.06 Total: -45.07 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.18 Total: -22.22 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.58 -8.29 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599327696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.249 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds