Wall clock time and date at job start Tue Mar 31 2020 07:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47014 * 2 1 4 4 C 1.50698 * 109.46745 * 119.99631 * 2 1 3 5 5 O 1.21278 * 120.00316 * 96.29708 * 4 2 1 6 6 N 1.34781 * 120.00060 * 276.29376 * 4 2 1 7 7 C 1.46507 * 119.99955 * 6.36689 * 6 4 2 8 8 C 1.50704 * 109.46871 * 93.38607 * 7 6 4 9 9 H 1.08002 * 119.99845 * 359.97438 * 8 7 6 10 10 C 1.37868 * 119.99812 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00149 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00114 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47290 * 59.99505 * 12 10 8 14 14 H 1.48503 * 109.47379 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47185 * 299.99698 * 12 10 8 16 16 C 1.46496 * 120.00024 * 186.36765 * 6 4 2 17 17 C 1.52998 * 109.47264 * 93.50329 * 16 6 4 18 18 C 1.52994 * 117.50033 * 242.98072 * 17 16 6 19 19 C 1.52999 * 117.50007 * 174.35567 * 17 16 6 20 20 C 1.52990 * 109.47344 * 239.99766 * 2 1 3 21 21 H 1.09007 * 110.21889 * 186.93290 * 20 2 1 22 22 C 1.54481 * 110.24801 * 64.99804 * 20 2 1 23 23 C 1.54621 * 101.80098 * 266.30965 * 22 20 2 24 24 C 1.51343 * 104.17040 * 335.24735 * 23 22 20 25 25 O 1.21274 * 124.93181 * 196.24689 * 24 23 22 26 26 N 1.34428 * 110.12575 * 16.20128 * 24 23 22 27 27 H 1.08996 * 109.47013 * 292.86059 * 1 2 3 28 28 H 1.09005 * 109.46825 * 52.85875 * 1 2 3 29 29 H 1.08996 * 109.46788 * 172.85468 * 1 2 3 30 30 H 1.08994 * 109.47121 * 213.38397 * 7 6 4 31 31 H 1.08998 * 109.46964 * 333.38499 * 7 6 4 32 32 H 0.97002 * 120.00123 * 180.02562 * 11 10 8 33 33 H 1.09004 * 109.47285 * 213.50657 * 16 6 4 34 34 H 1.09004 * 109.47222 * 333.50562 * 16 6 4 35 35 H 1.09003 * 115.55232 * 28.69056 * 17 16 6 36 36 H 1.08998 * 117.49918 * 359.97438 * 18 17 16 37 37 H 1.09000 * 117.50359 * 145.02370 * 18 17 16 38 38 H 1.08998 * 117.50084 * 214.98202 * 19 17 16 39 39 H 1.08999 * 117.49864 * 0.02562 * 19 17 16 40 40 H 1.09001 * 110.96546 * 24.45382 * 22 20 2 41 41 H 1.09003 * 110.96538 * 148.17339 * 22 20 2 42 42 H 1.09002 * 110.48394 * 93.89900 * 23 22 20 43 43 H 1.09003 * 110.48958 * 216.54119 * 23 22 20 44 44 H 0.96999 * 124.34560 * 180.46685 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3430 -1.8811 1.1706 6 7 2.1362 -0.0445 2.3978 7 6 1.6318 1.3267 2.5064 8 6 0.2155 1.3015 3.0208 9 1 -0.2613 0.3585 3.2440 10 6 -0.4719 2.4823 3.2054 11 7 0.1085 3.6306 2.9331 12 14 -2.2272 2.4513 3.8436 13 1 -2.2563 1.8063 5.1809 14 1 -2.7386 3.8411 3.9536 15 1 -3.0820 1.6817 2.9042 16 6 2.7537 -0.6919 3.5579 17 6 4.2417 -0.3392 3.6068 18 6 5.2445 -1.4859 3.4645 19 6 5.0402 -0.8124 4.8231 20 6 2.0401 -0.7212 -1.2491 21 1 3.1230 -0.8365 -1.2018 22 6 1.6408 0.0621 -2.5193 23 6 0.3124 -0.6257 -2.9105 24 6 0.4169 -2.0070 -2.3010 25 8 -0.2800 -2.9531 -2.6013 26 7 1.3950 -2.0331 -1.3792 27 1 -0.3633 0.3992 0.9469 28 1 -0.3633 0.6205 -0.8193 29 1 -0.3633 -1.0197 -0.1278 30 1 2.2590 1.8909 3.1965 31 1 1.6536 1.8006 1.5251 32 1 -0.3750 4.4614 3.0633 33 1 2.2677 -0.3441 4.4695 34 1 2.6390 -1.7727 3.4746 35 1 4.5114 0.6227 3.1708 36 1 4.8442 -2.4916 3.3365 37 1 6.1743 -1.2786 2.9348 38 1 5.8355 -0.1619 5.1870 39 1 4.5056 -1.3753 5.5882 40 1 1.4824 1.1167 -2.2935 41 1 2.3884 -0.0589 -3.3033 42 1 -0.5354 -0.0859 -2.4886 43 1 0.2221 -0.6923 -3.9947 44 1 1.6428 -2.8182 -0.8663 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599327696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:46 Heat of formation + Delta-G solvation = -70.888764 kcal Electronic energy + Delta-G solvation = -25065.032533 eV Core-core repulsion = 21596.065216 eV Total energy + Delta-G solvation = -3468.967318 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.93072 -40.47408 -38.40093 -37.58611 -36.45278 -34.39931 -33.34249 -32.05595 -29.58500 -28.44205 -27.97884 -24.98296 -24.45380 -23.20105 -22.30221 -21.50370 -21.23164 -19.82829 -18.46212 -18.18990 -18.01111 -17.63906 -16.84240 -16.44585 -16.13590 -15.83225 -15.70201 -15.00767 -14.86065 -14.65215 -14.34462 -14.28886 -13.99463 -13.67373 -13.45053 -13.25409 -13.03441 -12.86338 -12.72127 -12.59752 -12.50823 -12.35027 -12.29459 -12.08477 -11.98820 -11.72524 -11.66058 -11.30908 -10.91445 -10.83722 -10.63524 -10.37699 -10.00617 -9.41317 -8.18116 -6.29042 1.41031 1.44175 1.49530 1.61804 1.81982 2.28245 2.44979 2.53921 2.94490 3.12225 3.43766 3.58931 3.82135 3.87258 3.90608 4.03781 4.13164 4.15764 4.26940 4.39922 4.42189 4.50565 4.69696 4.76552 4.77291 4.82873 4.87106 4.95365 4.97489 5.01418 5.05741 5.16392 5.20068 5.26581 5.27892 5.31002 5.53516 5.68367 5.85780 5.94855 6.09874 6.17926 6.63005 6.85659 7.28707 7.35059 7.46050 8.86666 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.006910 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.903185 B = 4051.041692 C = 6177.826613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 H 0.116 0.884 4 C 0.517 3.483 5 O -0.590 6.590 6 N -0.596 5.596 7 C 0.253 3.747 8 C -0.537 4.537 9 H 0.045 0.955 10 C 0.033 3.967 11 N -0.912 5.912 12 Si 0.940 3.060 13 H -0.279 1.279 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.148 3.852 17 C -0.179 4.179 18 C -0.169 4.169 19 C -0.161 4.161 20 C 0.148 3.852 21 H 0.098 0.902 22 C -0.114 4.114 23 C -0.154 4.154 24 C 0.508 3.492 25 O -0.599 6.599 26 N -0.708 5.708 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.034 0.966 30 H 0.017 0.983 31 H 0.044 0.956 32 H 0.268 0.732 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 -1.731 -6.199 10.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 H 0.134 0.866 4 C 0.307 3.693 5 O -0.472 6.472 6 N -0.324 5.324 7 C 0.132 3.868 8 C -0.576 4.576 9 H 0.063 0.937 10 C -0.168 4.168 11 N -0.551 5.551 12 Si 0.767 3.233 13 H -0.204 1.204 14 H -0.205 1.205 15 H -0.199 1.199 16 C 0.025 3.975 17 C -0.198 4.198 18 C -0.206 4.206 19 C -0.199 4.199 20 C 0.042 3.958 21 H 0.116 0.884 22 C -0.152 4.152 23 C -0.193 4.193 24 C 0.296 3.704 25 O -0.482 6.482 26 N -0.360 5.360 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.713 -2.481 -6.411 10.332 hybrid contribution -1.051 -0.268 1.191 1.611 sum 6.661 -2.750 -5.220 8.898 Atomic orbital electron populations 1.21910 0.92919 1.00946 1.04663 1.21741 0.98249 1.01214 0.92052 0.86605 1.20917 0.76518 0.86474 0.85431 1.90511 1.53366 1.17187 1.86136 1.48153 1.57308 1.16707 1.10280 1.19135 0.92706 0.77144 0.97787 1.21496 0.99195 0.92197 1.44695 0.93691 1.25417 1.00989 0.95083 0.95354 1.69960 1.38567 0.97893 1.48640 0.85881 0.81270 0.77212 0.78948 1.20441 1.20543 1.19927 1.20839 0.90913 0.97183 0.88581 1.22607 0.92701 0.99379 1.05122 1.22990 1.00429 0.96695 1.00522 1.23012 1.02408 1.03423 0.91017 1.21626 0.97902 0.82033 0.94213 0.88434 1.22731 0.96276 1.00846 0.95311 1.22526 1.01132 0.91927 1.03749 1.21646 0.78355 0.91158 0.79242 1.90678 1.47822 1.43191 1.66483 1.46452 1.36104 1.13657 1.39806 0.91367 0.89550 0.94664 0.96497 0.93780 0.92300 0.91376 0.91541 0.88538 0.89536 0.87996 0.87232 0.88305 0.86847 0.87143 0.87007 0.86312 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 7.77 71.98 0.56 -4.33 16 2 C -0.11 -3.37 1.67 -11.54 -0.02 -3.39 16 3 H 0.12 3.35 6.28 -2.39 -0.01 3.33 16 4 C 0.52 19.30 6.77 87.66 0.59 19.90 16 5 O -0.59 -23.68 14.28 -3.02 -0.04 -23.72 16 6 N -0.60 -23.27 2.46 -826.14 -2.03 -25.30 16 7 C 0.25 11.06 4.86 85.63 0.42 11.47 16 8 C -0.54 -26.26 7.16 25.60 0.18 -26.08 16 9 H 0.04 2.31 7.81 -2.91 -0.02 2.28 16 10 C 0.03 1.63 5.46 84.65 0.46 2.09 16 11 N -0.91 -46.96 13.29 21.44 0.28 -46.68 16 12 Si 0.94 40.47 29.54 68.60 2.03 42.49 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 16 C 0.15 5.33 5.79 86.38 0.50 5.83 16 17 C -0.18 -5.38 6.01 -10.80 -0.06 -5.44 16 18 C -0.17 -4.33 10.18 30.59 0.31 -4.02 16 19 C -0.16 -3.83 10.25 30.59 0.31 -3.52 16 20 C 0.15 3.63 3.07 45.44 0.14 3.76 16 21 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 22 C -0.11 -1.90 6.32 31.65 0.20 -1.70 16 23 C -0.15 -3.19 6.08 30.60 0.19 -3.00 16 24 C 0.51 15.71 7.16 87.92 0.63 16.34 16 25 O -0.60 -23.99 18.03 -3.01 -0.05 -24.04 16 26 N -0.71 -20.98 4.69 -439.37 -2.06 -23.04 16 27 H 0.07 2.76 5.39 -2.39 -0.01 2.75 16 28 H 0.09 2.35 5.96 -2.38 -0.01 2.34 16 29 H 0.03 1.25 6.42 -2.39 -0.02 1.23 16 30 H 0.02 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.04 1.91 5.73 -2.39 -0.01 1.90 16 32 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 33 H 0.07 2.55 8.10 -2.38 -0.02 2.53 16 34 H 0.07 2.47 6.98 -2.39 -0.02 2.45 16 35 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 36 H 0.09 2.34 8.03 -2.39 -0.02 2.32 16 37 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.11 1.56 7.86 -2.39 -0.02 1.55 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 2.27 6.25 -2.39 -0.01 2.26 16 43 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.41 13.42 7.84 -92.71 -0.73 12.69 16 Total: -1.00 -62.56 348.19 2.82 -59.74 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.29 Total: 32.63 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 4.41 Total: 7.91 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -3.81 Total: -95.01 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -0.10 Total: -47.76 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.49 kcal Total: -62.56 2.82 -59.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599327696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.152 kcal (2) G-P(sol) polarization free energy of solvation -62.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds