Wall clock time and date at job start Tue Mar 31 2020 07:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47490 * 2 1 4 4 C 1.50706 * 109.47181 * 120.00382 * 2 1 3 5 5 O 1.21277 * 120.00202 * 85.57329 * 4 2 1 6 6 N 1.34778 * 119.99617 * 265.57732 * 4 2 1 7 7 C 1.46496 * 120.00094 * 4.69063 * 6 4 2 8 8 C 1.50707 * 109.46871 * 85.73646 * 7 6 4 9 9 H 1.07998 * 119.99838 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99725 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99828 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00314 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47312 * 270.00152 * 12 10 8 14 14 H 1.48501 * 109.47138 * 30.00202 * 12 10 8 15 15 H 1.48508 * 109.47016 * 150.00150 * 12 10 8 16 16 C 1.46502 * 119.99694 * 184.69950 * 6 4 2 17 17 C 1.53010 * 109.46700 * 270.49275 * 16 6 4 18 18 C 1.52997 * 117.50077 * 243.74663 * 17 16 6 19 19 C 1.52995 * 117.49768 * 175.08618 * 17 16 6 20 20 C 1.52999 * 109.46987 * 239.99884 * 2 1 3 21 21 H 1.09005 * 110.21781 * 300.47563 * 20 2 1 22 22 C 1.54485 * 110.24485 * 62.50066 * 20 2 1 23 23 C 1.54629 * 101.76208 * 144.41575 * 22 20 2 24 24 C 1.51285 * 104.19858 * 335.20031 * 23 22 20 25 25 O 1.21278 * 124.93938 * 196.23457 * 24 23 22 26 26 N 1.34417 * 110.11269 * 16.25550 * 24 23 22 27 27 H 1.09003 * 109.46670 * 300.80541 * 1 2 3 28 28 H 1.08999 * 109.46823 * 60.80894 * 1 2 3 29 29 H 1.08995 * 109.47196 * 180.81018 * 1 2 3 30 30 H 1.08997 * 109.47626 * 325.73498 * 7 6 4 31 31 H 1.09002 * 109.47516 * 205.73158 * 7 6 4 32 32 H 0.96995 * 120.00232 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.47487 * 30.49041 * 16 6 4 34 34 H 1.08996 * 109.47149 * 150.50091 * 16 6 4 35 35 H 1.08997 * 115.54736 * 29.42442 * 17 16 6 36 36 H 1.09004 * 117.49574 * 0.02562 * 18 17 16 37 37 H 1.08993 * 117.49883 * 145.02090 * 18 17 16 38 38 H 1.08999 * 117.50180 * 214.98538 * 19 17 16 39 39 H 1.09009 * 117.50121 * 359.97438 * 19 17 16 40 40 H 1.08999 * 110.96614 * 262.53561 * 22 20 2 41 41 H 1.08998 * 110.96771 * 26.29634 * 22 20 2 42 42 H 1.08996 * 110.48342 * 216.52105 * 23 22 20 43 43 H 1.08995 * 110.59900 * 93.93880 * 23 22 20 44 44 H 0.97000 * 124.34705 * 180.39005 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.1581 -1.9167 1.2254 6 7 2.3419 -0.0054 2.3366 7 6 2.0935 1.4378 2.3786 8 6 0.6717 1.6904 2.8099 9 1 0.0185 0.8590 3.0302 10 6 0.2047 2.9828 2.9222 11 7 -1.0362 3.2032 3.2981 12 14 1.3344 4.4206 2.5405 13 1 2.0448 4.8339 3.7773 14 1 2.3258 4.0120 1.5132 15 1 0.5305 5.5591 2.0275 16 6 2.9269 -0.6821 3.4968 17 6 1.8084 -1.1714 4.4192 18 6 1.7339 -0.5656 5.8221 19 6 2.2110 -2.0080 5.6353 20 6 2.0400 -0.7213 -1.2492 21 1 1.6764 -1.7488 -1.2658 22 6 1.5872 0.0286 -2.5217 23 6 2.8019 -0.1750 -3.4566 24 6 3.9624 -0.4024 -2.5130 25 8 5.1330 -0.3267 -2.8208 26 7 3.5071 -0.7011 -1.2840 27 1 -0.3633 0.5263 0.8827 28 1 -0.3633 0.5012 -0.8972 29 1 -0.3633 -1.0275 0.0145 30 1 2.2536 1.8631 1.3879 31 1 2.7767 1.9036 3.0888 32 1 -1.3647 4.1124 3.3775 33 1 3.5190 -1.5332 3.1606 34 1 3.5665 0.0141 4.0392 35 1 0.8678 -1.4189 3.9272 36 1 2.4814 0.1820 6.0879 37 1 0.7443 -0.4147 6.2532 38 1 1.5350 -2.8055 5.9436 39 1 3.2726 -2.2102 5.7781 40 1 0.6902 -0.4250 -2.9433 41 1 1.4272 1.0867 -2.3148 42 1 2.9711 0.7158 -4.0616 43 1 2.6529 -1.0458 -4.0949 44 1 4.0752 -0.8804 -0.5186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599327697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:49 Heat of formation + Delta-G solvation = -72.046395 kcal Electronic energy + Delta-G solvation = -25023.846464 eV Core-core repulsion = 21554.828948 eV Total energy + Delta-G solvation = -3469.017516 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.78116 -40.59388 -38.44248 -37.59868 -36.44622 -34.40138 -33.95513 -32.18521 -30.23471 -28.15098 -27.61115 -24.98225 -24.26445 -23.19954 -22.34249 -21.57268 -21.42626 -19.70641 -18.95182 -18.54230 -17.99704 -17.45720 -17.08788 -16.42471 -16.11766 -15.79828 -15.68201 -14.97155 -14.83501 -14.74052 -14.51616 -14.25634 -13.94137 -13.70095 -13.60239 -13.53895 -13.11460 -13.00970 -12.84979 -12.60397 -12.47776 -12.35357 -12.20875 -12.07092 -11.95860 -11.78709 -11.55114 -11.33867 -10.93765 -10.78987 -10.74039 -10.48746 -10.12712 -9.44600 -8.22074 -6.25476 1.39959 1.43888 1.49976 1.56646 1.69845 2.24284 2.37388 2.38535 2.99080 3.11594 3.35527 3.54558 3.68039 3.84330 3.91121 4.04802 4.13448 4.16445 4.28321 4.35143 4.38010 4.44019 4.66299 4.71420 4.73562 4.77067 4.81282 4.88598 4.90556 4.99200 5.04398 5.11136 5.12680 5.26040 5.26373 5.28081 5.49980 5.52917 5.72822 5.75659 6.04590 6.27137 6.61843 6.79649 7.19039 7.27253 7.39699 8.93395 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.006225 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.562033 B = 4497.244108 C = 5819.502140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 H 0.097 0.903 4 C 0.517 3.483 5 O -0.586 6.586 6 N -0.593 5.593 7 C 0.213 3.787 8 C -0.512 4.512 9 H 0.039 0.961 10 C 0.027 3.973 11 N -0.939 5.939 12 Si 0.926 3.074 13 H -0.274 1.274 14 H -0.241 1.241 15 H -0.287 1.287 16 C 0.151 3.849 17 C -0.168 4.168 18 C -0.172 4.172 19 C -0.158 4.158 20 C 0.147 3.853 21 H 0.090 0.910 22 C -0.119 4.119 23 C -0.144 4.144 24 C 0.508 3.492 25 O -0.593 6.593 26 N -0.723 5.723 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 -4.810 -7.222 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.115 0.885 4 C 0.306 3.694 5 O -0.468 6.468 6 N -0.321 5.321 7 C 0.091 3.909 8 C -0.551 4.551 9 H 0.057 0.943 10 C -0.172 4.172 11 N -0.579 5.579 12 Si 0.750 3.250 13 H -0.199 1.199 14 H -0.164 1.164 15 H -0.213 1.213 16 C 0.028 3.972 17 C -0.188 4.188 18 C -0.209 4.209 19 C -0.196 4.196 20 C 0.042 3.958 21 H 0.108 0.892 22 C -0.156 4.156 23 C -0.183 4.183 24 C 0.297 3.703 25 O -0.475 6.475 26 N -0.375 5.375 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.026 -5.215 -7.435 10.380 hybrid contribution 0.113 0.781 1.041 1.306 sum 5.140 -4.435 -6.394 9.326 Atomic orbital electron populations 1.21677 0.90803 1.02316 1.04466 1.21630 0.99222 1.00647 0.91561 0.88505 1.20907 0.76188 0.86979 0.85306 1.90604 1.55989 1.15085 1.85103 1.47993 1.60543 1.09870 1.13742 1.19741 0.95811 0.77288 0.98037 1.21293 0.96037 0.92506 1.45237 0.94318 1.25555 0.95948 1.01146 0.94534 1.70028 1.17268 1.21705 1.48859 0.86047 0.79709 0.79486 0.79742 1.19903 1.16402 1.21317 1.21011 0.93493 0.96966 0.85755 1.22442 0.99966 1.05801 0.90547 1.22924 1.02362 0.96732 0.98864 1.23037 1.02704 0.93736 1.00079 1.21743 0.78550 1.00614 0.94866 0.89180 1.22814 0.98855 1.02391 0.91566 1.22391 0.91675 1.06582 0.97669 1.21695 0.90095 0.74023 0.84491 1.90698 1.21233 1.55092 1.80450 1.46548 1.08949 1.70080 1.11925 0.92460 0.88629 0.92690 0.93574 0.94423 0.92582 0.90344 0.89455 0.91502 0.88188 0.90337 0.88458 0.86897 0.85683 0.88816 0.86476 0.85584 0.76256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.99 71.98 0.65 -3.41 16 2 C -0.11 -3.27 1.85 -11.54 -0.02 -3.30 16 3 H 0.10 3.00 5.80 -2.39 -0.01 2.98 16 4 C 0.52 18.87 5.96 87.66 0.52 19.40 16 5 O -0.59 -23.55 15.92 -3.02 -0.05 -23.60 16 6 N -0.59 -22.19 2.47 -826.13 -2.04 -24.23 16 7 C 0.21 8.54 4.09 85.64 0.35 8.89 16 8 C -0.51 -24.96 8.25 25.60 0.21 -24.75 16 9 H 0.04 2.20 7.79 -2.91 -0.02 2.18 16 10 C 0.03 1.37 5.47 84.65 0.46 1.84 16 11 N -0.94 -52.72 13.96 21.45 0.30 -52.42 16 12 Si 0.93 38.26 27.47 68.60 1.88 40.14 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.24 -8.91 6.54 99.48 0.65 -8.26 16 15 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 16 C 0.15 5.08 5.69 86.38 0.49 5.57 16 17 C -0.17 -5.88 6.01 -10.79 -0.06 -5.95 16 18 C -0.17 -5.45 10.18 30.62 0.31 -5.14 16 19 C -0.16 -4.29 10.25 30.62 0.31 -3.97 16 20 C 0.15 3.56 2.68 45.45 0.12 3.68 16 21 H 0.09 2.25 7.90 -2.38 -0.02 2.23 16 22 C -0.12 -1.90 5.60 31.65 0.18 -1.73 16 23 C -0.14 -2.45 6.86 30.59 0.21 -2.24 16 24 C 0.51 14.14 8.43 87.90 0.74 14.88 16 25 O -0.59 -21.67 18.03 -3.02 -0.05 -21.73 16 26 N -0.72 -19.88 5.74 -439.42 -2.52 -22.40 16 27 H 0.06 2.25 6.06 -2.39 -0.01 2.23 16 28 H 0.09 2.19 7.29 -2.39 -0.02 2.17 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.77 4.90 -2.39 -0.01 1.76 16 31 H 0.04 1.46 7.27 -2.39 -0.02 1.45 16 32 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.08 2.57 7.51 -2.39 -0.02 2.55 16 34 H 0.09 2.62 7.59 -2.39 -0.02 2.61 16 35 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.10 2.96 8.03 -2.39 -0.02 2.94 16 37 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 40 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.47 7.88 -2.39 -0.02 1.45 16 42 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.40 12.04 8.45 -92.71 -0.78 11.26 16 Total: -1.00 -67.04 354.56 2.16 -64.88 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.17 Total: 35.57 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 4.48 Total: 3.78 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -4.26 Total: -99.05 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.10 Total: -45.33 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.88 Total: 40.14 kcal Total: -67.04 2.16 -64.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599327697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.168 kcal (2) G-P(sol) polarization free energy of solvation -67.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds