Wall clock time and date at job start Tue Mar 31 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47136 * 2 1 4 4 C 1.50693 * 109.47030 * 239.99393 * 2 1 3 5 5 O 1.21287 * 120.00509 * 250.17966 * 4 2 1 6 6 N 1.34777 * 119.99728 * 70.18409 * 4 2 1 7 7 C 1.37099 * 120.00292 * 5.01506 * 6 4 2 8 8 H 1.08003 * 120.00202 * 232.15974 * 7 6 4 9 9 C 1.38952 * 119.99771 * 52.15477 * 7 6 4 10 10 N 1.31413 * 119.99993 * 200.93712 * 9 7 6 11 11 Si 1.86806 * 119.99757 * 20.94574 * 9 7 6 12 12 H 1.48500 * 109.47293 * 95.11248 * 11 9 7 13 13 H 1.48499 * 109.46503 * 215.11158 * 11 9 7 14 14 H 1.48500 * 109.47190 * 335.10842 * 11 9 7 15 15 C 1.46504 * 120.00065 * 185.01774 * 6 4 2 16 16 C 1.54262 * 110.03632 * 233.20988 * 15 6 4 17 17 C 1.54887 * 104.19776 * 217.10779 * 16 15 6 18 18 C 1.54891 * 102.75237 * 37.93589 * 17 16 15 19 19 C 1.53879 * 110.03293 * 116.03952 * 15 6 4 20 20 C 1.52999 * 109.46682 * 119.99546 * 2 1 3 21 21 H 1.08997 * 110.21515 * 180.47527 * 20 2 1 22 22 C 1.54476 * 110.25050 * 302.49784 * 20 2 1 23 23 C 1.54635 * 101.76791 * 144.41508 * 22 20 2 24 24 C 1.51283 * 104.19114 * 335.20379 * 23 22 20 25 25 O 1.21287 * 124.93709 * 196.22875 * 24 23 22 26 26 N 1.34410 * 110.11873 * 16.25062 * 24 23 22 27 27 H 1.08999 * 109.46997 * 298.32808 * 1 2 3 28 28 H 1.09008 * 109.46729 * 58.32299 * 1 2 3 29 29 H 1.08990 * 109.47149 * 178.32233 * 1 2 3 30 30 H 0.96996 * 119.99656 * 180.02562 * 10 9 7 31 31 H 1.09003 * 110.01667 * 354.65028 * 15 6 4 32 32 H 1.09003 * 110.48449 * 335.78150 * 16 15 6 33 33 H 1.08995 * 110.48910 * 98.42264 * 16 15 6 34 34 H 1.09006 * 110.75404 * 279.62705 * 17 16 15 35 35 H 1.09000 * 110.75876 * 156.25426 * 17 16 15 36 36 H 1.08995 * 110.49160 * 203.38290 * 18 17 16 37 37 H 1.09002 * 110.48417 * 80.73265 * 18 17 16 38 38 H 1.08998 * 110.03063 * 238.57465 * 19 15 6 39 39 H 1.08996 * 110.03074 * 0.02562 * 19 15 6 40 40 H 1.08999 * 110.97386 * 262.53875 * 22 20 2 41 41 H 1.08999 * 110.96928 * 26.29995 * 22 20 2 42 42 H 1.09002 * 110.48286 * 216.52687 * 23 22 20 43 43 H 1.08997 * 110.59560 * 93.93628 * 23 22 20 44 44 H 0.97000 * 124.35129 * 180.38499 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.5703 -1.7928 -1.1286 6 7 1.8839 -0.1432 -2.4439 7 6 1.3700 1.1233 -2.5503 8 1 0.5372 1.3145 -3.2108 9 6 1.9207 2.1611 -1.8083 10 7 1.2190 3.2479 -1.5770 11 14 3.6586 2.0114 -1.1397 12 1 4.6085 2.6567 -2.0812 13 1 3.7395 2.6824 0.1826 14 1 4.0090 0.5763 -0.9888 15 6 2.2716 -0.8801 -3.6493 16 6 3.2395 -0.0312 -4.4992 17 6 2.8373 -0.3464 -5.9614 18 6 1.2941 -0.4491 -5.8770 19 6 1.0347 -1.1458 -4.5253 20 6 2.0400 -0.7212 1.2493 21 1 3.1298 -0.7209 1.2659 22 6 1.4840 -0.0443 2.5217 23 6 1.2708 -1.2573 3.4567 24 6 1.0984 -2.4272 2.5131 25 8 0.6367 -3.5057 2.8209 26 7 1.5317 -2.0976 1.2842 27 1 -0.3633 0.4876 0.9046 28 1 -0.3633 0.5397 -0.8746 29 1 -0.3633 -1.0271 -0.0301 30 1 1.6035 3.9724 -1.0593 31 1 2.7439 -1.8232 -3.3744 32 1 3.1042 1.0292 -4.2865 33 1 4.2714 -0.3296 -4.3146 34 1 3.2702 -1.2928 -6.2857 35 1 3.1347 0.4639 -6.6271 36 1 0.9064 -1.0524 -6.6978 37 1 0.8447 0.5439 -5.8867 38 1 0.9073 -2.2177 -4.6761 39 1 0.1461 -0.7261 -4.0538 40 1 2.2106 0.6503 2.9434 41 1 0.5398 0.4593 2.3148 42 1 0.3745 -1.1198 4.0616 43 1 2.1415 -1.4072 4.0951 44 1 1.5115 -2.6931 0.5187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599539768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:52 Heat of formation + Delta-G solvation = -72.978979 kcal Electronic energy + Delta-G solvation = -25840.541072 eV Core-core repulsion = 22371.483115 eV Total energy + Delta-G solvation = -3469.057956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45328 -39.18186 -37.25755 -36.05242 -34.43965 -32.11706 -31.83230 -30.92950 -28.15882 -27.42038 -26.46435 -24.81117 -23.78325 -21.15849 -20.20129 -20.16020 -19.43374 -19.20373 -17.12831 -16.57393 -16.40998 -15.84452 -15.41926 -14.90750 -14.59393 -14.25124 -14.07115 -13.84666 -13.49812 -13.27369 -12.99645 -12.81149 -12.70832 -12.38605 -12.30384 -11.62753 -11.52277 -11.46250 -11.12678 -11.09447 -10.89530 -10.68659 -10.64670 -10.55248 -10.52839 -10.32657 -10.15508 -10.06444 -9.87949 -9.50948 -9.12276 -8.63406 -8.60453 -7.64755 -6.62802 -4.33285 2.93815 2.96156 3.09088 3.18540 3.60008 3.86753 3.96542 4.21525 4.66739 4.70131 4.74846 5.01934 5.17314 5.20008 5.30679 5.42928 5.43584 5.62197 5.75261 5.83321 5.92396 5.94063 6.02329 6.07317 6.10316 6.12575 6.14685 6.21968 6.30673 6.36020 6.37718 6.51139 6.54038 6.63072 6.75843 6.86861 6.98277 7.04862 7.25273 7.52386 7.58441 7.70139 8.36748 8.68453 8.83942 9.16260 9.60820 10.46018 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.006451 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.538746 B = 4339.613668 C = 5150.941525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 H 0.103 0.897 4 C 0.500 3.500 5 O -0.599 6.599 6 N -0.462 5.462 7 C -0.339 4.339 8 H 0.100 0.900 9 C 0.079 3.921 10 N -0.850 5.850 11 Si 0.841 3.159 12 H -0.276 1.276 13 H -0.276 1.276 14 H -0.253 1.253 15 C 0.129 3.871 16 C -0.131 4.131 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.126 4.126 20 C 0.145 3.855 21 H 0.077 0.923 22 C -0.137 4.137 23 C -0.155 4.155 24 C 0.513 3.487 25 O -0.555 6.555 26 N -0.700 5.700 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.276 0.724 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -1.135 0.838 1.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 H 0.121 0.879 4 C 0.290 3.710 5 O -0.484 6.484 6 N -0.181 5.181 7 C -0.466 4.466 8 H 0.117 0.883 9 C -0.129 4.129 10 N -0.484 5.484 11 Si 0.665 3.335 12 H -0.202 1.202 13 H -0.202 1.202 14 H -0.177 1.177 15 C 0.025 3.975 16 C -0.169 4.169 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.164 4.164 20 C 0.039 3.961 21 H 0.095 0.905 22 C -0.175 4.175 23 C -0.195 4.195 24 C 0.299 3.701 25 O -0.435 6.435 26 N -0.357 5.357 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.112 -1.945 1.171 2.528 hybrid contribution 1.150 0.225 -0.115 1.177 sum 2.261 -1.721 1.056 3.031 Atomic orbital electron populations 1.21611 0.92366 1.01301 1.03429 1.21479 0.98992 1.00596 0.91736 0.87915 1.20389 0.80025 0.85045 0.85542 1.90468 1.47836 1.23260 1.86826 1.43769 1.56643 1.14717 1.03008 1.18763 1.15558 0.82267 1.30061 0.88253 1.25551 0.96840 0.94972 0.95576 1.69732 1.35925 1.06949 1.35783 0.87368 0.86715 0.80137 0.79272 1.20175 1.20154 1.17715 1.21686 0.93926 0.95604 0.86301 1.22665 0.97794 1.02597 0.93840 1.22406 0.96085 1.00417 0.96898 1.22268 0.95887 1.00690 0.96630 1.22394 0.99432 0.99135 0.95459 1.21550 0.98309 0.81490 0.94800 0.90538 1.22868 1.03488 0.97135 0.94009 1.22326 1.04552 0.94239 0.98387 1.20861 0.76601 0.88506 0.84179 1.90700 1.47018 1.25915 1.79861 1.46454 1.61687 1.15555 1.11993 0.92720 0.89259 0.93660 0.91319 0.90002 0.89338 0.92934 0.92322 0.92124 0.92754 0.91384 0.92763 0.90820 0.89470 0.88764 0.88389 0.88303 0.73819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.62 37.16 0.32 -2.04 16 2 C -0.11 -2.06 1.36 -91.77 -0.12 -2.19 16 3 H 0.10 2.12 3.29 -51.93 -0.17 1.95 16 4 C 0.50 10.89 4.43 -10.99 -0.05 10.84 16 5 O -0.60 -13.87 13.53 5.55 0.08 -13.79 16 6 N -0.46 -9.94 1.86 -106.54 -0.20 -10.14 16 7 C -0.34 -7.74 5.74 -14.93 -0.09 -7.82 16 8 H 0.10 2.45 7.65 -52.48 -0.40 2.05 16 9 C 0.08 1.84 4.04 -17.47 -0.07 1.77 16 10 N -0.85 -20.70 13.96 55.50 0.77 -19.92 16 11 Si 0.84 18.47 25.07 -169.99 -4.26 14.21 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 14 H -0.25 -5.80 5.72 56.52 0.32 -5.47 16 15 C 0.13 2.50 3.29 -66.81 -0.22 2.28 16 16 C -0.13 -2.36 6.40 -25.08 -0.16 -2.52 16 17 C -0.12 -1.77 6.91 -24.74 -0.17 -1.94 16 18 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 19 C -0.13 -2.15 6.30 -25.61 -0.16 -2.31 16 20 C 0.14 2.47 2.89 -67.01 -0.19 2.28 16 21 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 22 C -0.14 -1.83 6.51 -25.10 -0.16 -1.99 16 23 C -0.15 -2.01 6.86 -26.74 -0.18 -2.19 16 24 C 0.51 8.93 8.43 -10.86 -0.09 8.84 16 25 O -0.56 -11.57 18.03 5.55 0.10 -11.47 16 26 N -0.70 -12.51 4.80 -52.76 -0.25 -12.77 16 27 H 0.05 0.87 5.92 -51.93 -0.31 0.56 16 28 H 0.09 1.81 6.62 -51.92 -0.34 1.46 16 29 H 0.04 0.81 7.66 -51.93 -0.40 0.41 16 30 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 31 H 0.08 1.68 6.96 -51.93 -0.36 1.32 16 32 H 0.09 1.78 6.85 -51.93 -0.36 1.43 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.36 7.24 -51.93 -0.38 0.99 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.23 5.63 -51.93 -0.29 0.93 16 42 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.42 8.17 7.08 -40.82 -0.29 7.88 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -26.99 330.39 -7.05 -34.04 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -6.74 Total: 13.79 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.52 Total: 1.08 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.32 Total: -42.83 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.18 Total: -25.26 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.26 Total: 14.21 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.99 -7.05 -34.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599539768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.943 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds