Wall clock time and date at job start Tue Mar 31 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47136 * 2 1 4 4 C 1.50693 * 109.47030 * 239.99393 * 2 1 3 5 5 O 1.21287 * 120.00509 * 250.17966 * 4 2 1 6 6 N 1.34777 * 119.99728 * 70.18409 * 4 2 1 7 7 C 1.37099 * 120.00292 * 5.01506 * 6 4 2 8 8 H 1.08003 * 120.00202 * 232.15974 * 7 6 4 9 9 C 1.38952 * 119.99771 * 52.15477 * 7 6 4 10 10 N 1.31413 * 119.99993 * 200.93712 * 9 7 6 11 11 Si 1.86806 * 119.99757 * 20.94574 * 9 7 6 12 12 H 1.48500 * 109.47293 * 95.11248 * 11 9 7 13 13 H 1.48499 * 109.46503 * 215.11158 * 11 9 7 14 14 H 1.48500 * 109.47190 * 335.10842 * 11 9 7 15 15 C 1.46504 * 120.00065 * 185.01774 * 6 4 2 16 16 C 1.54262 * 110.03632 * 233.20988 * 15 6 4 17 17 C 1.54887 * 104.19776 * 217.10779 * 16 15 6 18 18 C 1.54891 * 102.75237 * 37.93589 * 17 16 15 19 19 C 1.53879 * 110.03293 * 116.03952 * 15 6 4 20 20 C 1.52999 * 109.46682 * 119.99546 * 2 1 3 21 21 H 1.08997 * 110.21515 * 180.47527 * 20 2 1 22 22 C 1.54476 * 110.25050 * 302.49784 * 20 2 1 23 23 C 1.54635 * 101.76791 * 144.41508 * 22 20 2 24 24 C 1.51283 * 104.19114 * 335.20379 * 23 22 20 25 25 O 1.21287 * 124.93709 * 196.22875 * 24 23 22 26 26 N 1.34410 * 110.11873 * 16.25062 * 24 23 22 27 27 H 1.08999 * 109.46997 * 298.32808 * 1 2 3 28 28 H 1.09008 * 109.46729 * 58.32299 * 1 2 3 29 29 H 1.08990 * 109.47149 * 178.32233 * 1 2 3 30 30 H 0.96996 * 119.99656 * 180.02562 * 10 9 7 31 31 H 1.09003 * 110.01667 * 354.65028 * 15 6 4 32 32 H 1.09003 * 110.48449 * 335.78150 * 16 15 6 33 33 H 1.08995 * 110.48910 * 98.42264 * 16 15 6 34 34 H 1.09006 * 110.75404 * 279.62705 * 17 16 15 35 35 H 1.09000 * 110.75876 * 156.25426 * 17 16 15 36 36 H 1.08995 * 110.49160 * 203.38290 * 18 17 16 37 37 H 1.09002 * 110.48417 * 80.73265 * 18 17 16 38 38 H 1.08998 * 110.03063 * 238.57465 * 19 15 6 39 39 H 1.08996 * 110.03074 * 0.02562 * 19 15 6 40 40 H 1.08999 * 110.97386 * 262.53875 * 22 20 2 41 41 H 1.08999 * 110.96928 * 26.29995 * 22 20 2 42 42 H 1.09002 * 110.48286 * 216.52687 * 23 22 20 43 43 H 1.08997 * 110.59560 * 93.93628 * 23 22 20 44 44 H 0.97000 * 124.35129 * 180.38499 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.5703 -1.7928 -1.1286 6 7 1.8839 -0.1432 -2.4439 7 6 1.3700 1.1233 -2.5503 8 1 0.5372 1.3145 -3.2108 9 6 1.9207 2.1611 -1.8083 10 7 1.2190 3.2479 -1.5770 11 14 3.6586 2.0114 -1.1397 12 1 4.6085 2.6567 -2.0812 13 1 3.7395 2.6824 0.1826 14 1 4.0090 0.5763 -0.9888 15 6 2.2716 -0.8801 -3.6493 16 6 3.2395 -0.0312 -4.4992 17 6 2.8373 -0.3464 -5.9614 18 6 1.2941 -0.4491 -5.8770 19 6 1.0347 -1.1458 -4.5253 20 6 2.0400 -0.7212 1.2493 21 1 3.1298 -0.7209 1.2659 22 6 1.4840 -0.0443 2.5217 23 6 1.2708 -1.2573 3.4567 24 6 1.0984 -2.4272 2.5131 25 8 0.6367 -3.5057 2.8209 26 7 1.5317 -2.0976 1.2842 27 1 -0.3633 0.4876 0.9046 28 1 -0.3633 0.5397 -0.8746 29 1 -0.3633 -1.0271 -0.0301 30 1 1.6035 3.9724 -1.0593 31 1 2.7439 -1.8232 -3.3744 32 1 3.1042 1.0292 -4.2865 33 1 4.2714 -0.3296 -4.3146 34 1 3.2702 -1.2928 -6.2857 35 1 3.1347 0.4639 -6.6271 36 1 0.9064 -1.0524 -6.6978 37 1 0.8447 0.5439 -5.8867 38 1 0.9073 -2.2177 -4.6761 39 1 0.1461 -0.7261 -4.0538 40 1 2.2106 0.6503 2.9434 41 1 0.5398 0.4593 2.3148 42 1 0.3745 -1.1198 4.0616 43 1 2.1415 -1.4072 4.0951 44 1 1.5115 -2.6931 0.5187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599539768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:52 Heat of formation + Delta-G solvation = -89.379652 kcal Electronic energy + Delta-G solvation = -25841.252258 eV Core-core repulsion = 22371.483115 eV Total energy + Delta-G solvation = -3469.769143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91986 -40.71133 -38.73145 -37.53038 -36.15263 -33.74640 -33.46903 -32.12773 -29.54009 -28.88347 -27.84380 -26.57988 -25.19725 -22.52786 -21.52604 -21.45379 -21.01845 -20.77931 -18.81879 -18.01965 -17.77757 -17.36795 -17.09740 -16.42741 -16.00870 -15.76170 -15.57871 -15.42655 -15.02619 -14.67955 -14.42527 -14.40480 -14.14464 -13.85111 -13.48479 -13.13104 -13.00652 -12.87347 -12.77979 -12.58395 -12.49050 -12.20850 -11.98263 -11.92164 -11.86938 -11.78617 -11.66210 -11.44893 -11.39569 -10.96481 -10.85838 -10.34399 -10.04578 -9.39280 -8.47405 -6.17751 1.17439 1.30525 1.39020 1.60470 1.87172 2.15693 2.49557 2.63743 2.93079 3.43414 3.52151 3.77322 3.84055 3.84429 4.03205 4.11087 4.16269 4.28114 4.39506 4.50326 4.58330 4.66164 4.71547 4.73666 4.76732 4.82365 4.86629 4.88581 5.00142 5.04140 5.10738 5.12834 5.21878 5.22335 5.36697 5.43050 5.51422 5.56395 5.76291 5.83266 5.96894 6.17829 6.51653 7.01451 7.26912 7.39810 7.85413 8.65155 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.006451 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.538746 B = 4339.613668 C = 5150.941525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 H 0.094 0.906 4 C 0.489 3.511 5 O -0.617 6.617 6 N -0.467 5.467 7 C -0.327 4.327 8 H 0.076 0.924 9 C 0.062 3.938 10 N -0.875 5.875 11 Si 0.878 3.122 12 H -0.284 1.284 13 H -0.257 1.257 14 H -0.270 1.270 15 C 0.118 3.882 16 C -0.131 4.131 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.122 4.122 20 C 0.141 3.859 21 H 0.070 0.930 22 C -0.128 4.128 23 C -0.140 4.140 24 C 0.505 3.495 25 O -0.596 6.596 26 N -0.706 5.706 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.281 0.719 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 -0.668 1.493 2.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.127 4.127 3 H 0.112 0.888 4 C 0.280 3.720 5 O -0.504 6.504 6 N -0.187 5.187 7 C -0.454 4.454 8 H 0.094 0.906 9 C -0.145 4.145 10 N -0.511 5.511 11 Si 0.703 3.297 12 H -0.211 1.211 13 H -0.181 1.181 14 H -0.195 1.195 15 C 0.014 3.986 16 C -0.169 4.169 17 C -0.148 4.148 18 C -0.148 4.148 19 C -0.160 4.160 20 C 0.035 3.965 21 H 0.088 0.912 22 C -0.165 4.165 23 C -0.179 4.179 24 C 0.293 3.707 25 O -0.479 6.479 26 N -0.360 5.360 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.522 -1.443 1.828 2.782 hybrid contribution 1.017 0.011 -0.397 1.092 sum 2.539 -1.432 1.430 3.247 Atomic orbital electron populations 1.21507 0.91644 1.00911 1.03579 1.21481 0.99485 0.99955 0.91783 0.88821 1.20920 0.79714 0.85051 0.86355 1.90449 1.48625 1.24098 1.87199 1.43879 1.56506 1.14440 1.03841 1.18454 1.14815 0.82834 1.29340 0.90633 1.25750 0.98202 0.94747 0.95760 1.69766 1.36829 1.07603 1.36865 0.86813 0.84271 0.78946 0.79649 1.21097 1.18085 1.19476 1.21894 0.95424 0.95054 0.86183 1.22632 0.97550 1.00615 0.96127 1.22395 0.95677 1.02058 0.94645 1.22238 0.96234 1.00295 0.96075 1.22348 0.97310 1.00175 0.96179 1.21646 0.98076 0.81202 0.95553 0.91206 1.22927 1.04340 0.97452 0.91814 1.22357 1.06802 0.91265 0.97522 1.21659 0.75357 0.89133 0.84553 1.90674 1.48752 1.27963 1.80482 1.46592 1.61622 1.15777 1.12030 0.90038 0.91780 0.94046 0.90829 0.91338 0.91765 0.92818 0.90270 0.90507 0.89832 0.92530 0.91364 0.92909 0.86581 0.88186 0.86031 0.85765 0.75370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 8.62 71.98 0.62 -3.66 16 2 C -0.11 -4.04 1.36 -11.54 -0.02 -4.06 16 3 H 0.09 3.79 3.29 -2.39 -0.01 3.78 16 4 C 0.49 21.62 4.43 87.65 0.39 22.01 16 5 O -0.62 -29.18 13.53 -3.05 -0.04 -29.22 16 6 N -0.47 -20.56 1.86 -609.37 -1.13 -21.70 16 7 C -0.33 -15.25 5.74 84.04 0.48 -14.77 16 8 H 0.08 3.88 7.65 -2.91 -0.02 3.85 16 9 C 0.06 2.89 4.04 84.93 0.34 3.23 16 10 N -0.88 -42.52 13.96 21.66 0.30 -42.22 16 11 Si 0.88 37.81 25.07 68.60 1.72 39.53 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 14 H -0.27 -12.31 5.72 99.48 0.57 -11.74 16 15 C 0.12 4.65 3.29 45.72 0.15 4.80 16 16 C -0.13 -4.70 6.40 31.67 0.20 -4.49 16 17 C -0.11 -3.03 6.91 31.88 0.22 -2.81 16 18 C -0.11 -3.15 6.83 31.67 0.22 -2.93 16 19 C -0.12 -4.15 6.30 31.32 0.20 -3.95 16 20 C 0.14 4.63 2.89 45.44 0.13 4.76 16 21 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 22 C -0.13 -2.97 6.51 31.65 0.21 -2.76 16 23 C -0.14 -3.13 6.86 30.59 0.21 -2.92 16 24 C 0.50 16.94 8.43 87.90 0.74 17.68 16 25 O -0.60 -24.64 18.03 -3.05 -0.05 -24.69 16 26 N -0.71 -24.95 4.80 -439.44 -2.11 -27.06 16 27 H 0.08 2.45 5.92 -2.39 -0.01 2.44 16 28 H 0.06 2.63 6.62 -2.38 -0.02 2.61 16 29 H 0.04 1.49 7.66 -2.39 -0.02 1.47 16 30 H 0.28 12.80 8.31 -92.71 -0.77 12.03 16 31 H 0.07 2.86 6.96 -2.39 -0.02 2.85 16 32 H 0.06 2.62 6.85 -2.39 -0.02 2.60 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 2.00 7.24 -2.39 -0.02 1.99 16 40 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.10 2.23 5.63 -2.39 -0.01 2.21 16 42 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.41 16.16 7.08 -92.71 -0.66 15.51 16 Total: -1.00 -59.76 330.39 3.00 -56.77 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: 0.22 Total: 38.46 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 4.09 Total: 10.13 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.94 Total: -90.98 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.10 Total: -53.91 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.72 Total: 39.53 kcal Total: -59.76 3.00 -56.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599539768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.614 kcal (2) G-P(sol) polarization free energy of solvation -59.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds