Wall clock time and date at job start Tue Mar 31 2020 07:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47077 * 2 1 4 4 C 1.50702 * 109.47122 * 119.99982 * 2 1 3 5 5 O 1.21290 * 119.99856 * 105.72713 * 4 2 1 6 6 N 1.34778 * 120.00027 * 285.73692 * 4 2 1 7 7 C 1.37097 * 119.99900 * 185.43348 * 6 4 2 8 8 H 1.08001 * 119.99466 * 221.74745 * 7 6 4 9 9 C 1.38951 * 120.00071 * 41.74914 * 7 6 4 10 10 N 1.31410 * 119.99718 * 16.22024 * 9 7 6 11 11 Si 1.86795 * 119.99985 * 196.21510 * 9 7 6 12 12 H 1.48507 * 109.46958 * 90.00266 * 11 9 7 13 13 H 1.48496 * 109.47475 * 210.00157 * 11 9 7 14 14 H 1.48504 * 109.47410 * 330.00682 * 11 9 7 15 15 C 1.46500 * 119.99918 * 5.42918 * 6 4 2 16 16 C 1.54263 * 110.03203 * 242.19666 * 15 6 4 17 17 C 1.54971 * 104.15678 * 217.13619 * 16 15 6 18 18 C 1.54889 * 102.77998 * 37.89041 * 17 16 15 19 19 C 1.53884 * 110.03221 * 124.97891 * 15 6 4 20 20 C 1.52995 * 109.46950 * 239.99870 * 2 1 3 21 21 H 1.08998 * 110.28494 * 186.97754 * 20 2 1 22 22 C 1.54483 * 110.24699 * 65.00465 * 20 2 1 23 23 C 1.54629 * 101.79541 * 266.39429 * 22 20 2 24 24 C 1.51338 * 104.16927 * 335.24254 * 23 22 20 25 25 O 1.21275 * 124.93145 * 196.26086 * 24 23 22 26 26 N 1.34427 * 110.12981 * 16.20643 * 24 23 22 27 27 H 1.08997 * 109.47029 * 292.97846 * 1 2 3 28 28 H 1.09006 * 109.46992 * 52.97325 * 1 2 3 29 29 H 1.08991 * 109.47333 * 172.97220 * 1 2 3 30 30 H 0.97003 * 119.99804 * 184.97055 * 10 9 7 31 31 H 1.09001 * 110.01649 * 3.58975 * 15 6 4 32 32 H 1.08991 * 110.48630 * 335.78096 * 16 15 6 33 33 H 1.08994 * 110.48684 * 98.43296 * 16 15 6 34 34 H 1.08997 * 110.72121 * 279.56943 * 17 16 15 35 35 H 1.09001 * 110.91868 * 156.29773 * 17 16 15 36 36 H 1.08991 * 110.48856 * 203.40293 * 18 17 16 37 37 H 1.09002 * 110.59787 * 80.81322 * 18 17 16 38 38 H 1.08995 * 110.03209 * 238.57489 * 19 15 6 39 39 H 1.08998 * 110.02950 * 359.97438 * 19 15 6 40 40 H 1.09000 * 110.96901 * 24.53000 * 22 20 2 41 41 H 1.08998 * 110.96811 * 148.25840 * 22 20 2 42 42 H 1.09000 * 110.48498 * 93.89879 * 23 22 20 43 43 H 1.08996 * 110.48528 * 216.54052 * 23 22 20 44 44 H 0.96996 * 124.35129 * 180.45742 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5030 -1.8245 1.1379 6 7 1.9586 -0.1079 2.4338 7 6 2.5154 -0.7055 3.5349 8 1 1.9888 -0.6974 4.4778 9 6 3.7571 -1.3215 3.4378 10 7 4.5374 -1.0685 2.4112 11 14 4.3171 -2.5089 4.7665 12 1 3.8839 -3.8852 4.4150 13 1 5.7976 -2.4685 4.8746 14 1 3.7149 -2.1173 6.0663 15 6 1.2834 1.1856 2.5651 16 6 2.2846 2.2583 3.0411 17 6 1.4567 3.1505 4.0003 18 6 0.5569 2.1239 4.7322 19 6 0.1851 1.1002 3.6396 20 6 2.0400 -0.7213 -1.2492 21 1 3.1227 -0.8378 -1.2027 22 6 1.6408 0.0623 -2.5193 23 6 0.3111 -0.6240 -2.9092 24 6 0.4144 -2.0053 -2.2994 25 8 -0.2838 -2.9506 -2.5990 26 7 1.3932 -2.0323 -1.3784 27 1 -0.3633 0.4012 0.9461 28 1 -0.3633 0.6189 -0.8205 29 1 -0.3633 -1.0198 -0.1257 30 1 5.3719 -1.5517 2.3056 31 1 0.8487 1.4783 1.6094 32 1 3.1156 1.7953 3.5730 33 1 2.6491 2.8418 2.1957 34 1 0.8522 3.8630 3.4390 35 1 2.1051 3.6686 4.7069 36 1 -0.3382 2.6095 5.1204 37 1 1.1067 1.6384 5.5386 38 1 -0.7824 1.3523 3.2054 39 1 0.1542 0.0963 4.0629 40 1 1.4838 1.1171 -2.2937 41 1 2.3875 -0.0600 -3.3038 42 1 -0.5356 -0.0830 -2.4868 43 1 0.2199 -0.6909 -3.9933 44 1 1.6404 -2.8175 -0.8653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599539770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:57 Heat of formation + Delta-G solvation = -90.252007 kcal Electronic energy + Delta-G solvation = -25789.227292 eV Core-core repulsion = 22319.420321 eV Total energy + Delta-G solvation = -3469.806971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81046 -40.37371 -38.44665 -37.52240 -35.08449 -34.01127 -32.64246 -31.96803 -29.42020 -28.57771 -28.21051 -26.83487 -24.41591 -22.34693 -21.41342 -21.33306 -21.13982 -20.47859 -18.21889 -18.16527 -17.62337 -17.23799 -16.63478 -16.12807 -16.09361 -15.78155 -15.20835 -15.17797 -14.72957 -14.52494 -14.19296 -14.07806 -13.90475 -13.46142 -13.30047 -12.94183 -12.89444 -12.87043 -12.64228 -12.31733 -12.27069 -12.12851 -11.99972 -11.93309 -11.79692 -11.73096 -11.67395 -11.32048 -11.19762 -10.87349 -10.70059 -10.02750 -9.77082 -8.96007 -8.12452 -5.87113 1.34746 1.41826 1.44969 1.65694 2.33387 2.55517 2.60527 3.15056 3.32286 3.54217 3.69343 3.87817 3.93280 3.99155 4.10211 4.18503 4.31522 4.37981 4.44211 4.58675 4.72041 4.73810 4.75020 4.86605 4.90011 4.93509 4.96695 4.98444 5.00676 5.16687 5.17270 5.22132 5.25255 5.33070 5.36621 5.47423 5.60374 5.62497 5.73483 5.90300 6.26364 6.29744 7.14132 7.29870 7.34583 7.85712 8.50645 8.93507 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.006580 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.795525 B = 4254.242609 C = 5503.858239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 H 0.111 0.889 4 C 0.472 3.528 5 O -0.588 6.588 6 N -0.463 5.463 7 C -0.331 4.331 8 H 0.070 0.930 9 C 0.023 3.977 10 N -0.864 5.864 11 Si 0.949 3.051 12 H -0.297 1.297 13 H -0.286 1.286 14 H -0.260 1.260 15 C 0.118 3.882 16 C -0.127 4.127 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.129 4.129 20 C 0.149 3.851 21 H 0.066 0.934 22 C -0.112 4.112 23 C -0.145 4.145 24 C 0.504 3.496 25 O -0.603 6.603 26 N -0.710 5.710 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.032 0.968 30 H 0.253 0.747 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 13.227 -5.758 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 H 0.129 0.871 4 C 0.261 3.739 5 O -0.469 6.469 6 N -0.184 5.184 7 C -0.459 4.459 8 H 0.087 0.913 9 C -0.182 4.182 10 N -0.501 5.501 11 Si 0.777 3.223 12 H -0.224 1.224 13 H -0.212 1.212 14 H -0.184 1.184 15 C 0.015 3.985 16 C -0.165 4.165 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.168 4.168 20 C 0.043 3.957 21 H 0.084 0.916 22 C -0.149 4.149 23 C -0.185 4.185 24 C 0.293 3.707 25 O -0.486 6.486 26 N -0.361 5.361 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.143 0.857 41 H 0.115 0.885 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -7.420 12.316 -6.034 15.594 hybrid contribution 1.142 -1.870 1.383 2.591 sum -6.278 10.446 -4.651 13.045 Atomic orbital electron populations 1.21982 0.92258 1.01746 1.03867 1.21665 0.98186 1.00640 0.92675 0.87113 1.20708 0.81291 0.86411 0.85480 1.90429 1.48264 1.22213 1.86033 1.43592 1.50994 1.16990 1.06819 1.18963 0.99349 1.36673 0.90953 0.91271 1.25718 0.95186 0.99145 0.98201 1.69924 1.10726 1.38052 1.31364 0.85613 0.77090 0.79421 0.80208 1.22428 1.21181 1.18450 1.22149 0.92788 0.84238 0.99374 1.22619 0.98326 0.96328 0.99267 1.22417 0.97730 0.96861 0.97786 1.22252 0.99721 0.96255 0.97085 1.22432 0.98313 0.99203 0.96834 1.21487 0.96853 0.82209 0.95129 0.91556 1.22739 0.96271 1.01189 0.94723 1.22512 1.00965 0.91318 1.03680 1.21810 0.78270 0.91608 0.79059 1.90670 1.48059 1.43418 1.66473 1.46553 1.35962 1.13782 1.39784 0.91653 0.87879 0.94876 0.93762 0.88049 0.93986 0.91678 0.89247 0.91645 0.89852 0.93852 0.89948 0.93994 0.85652 0.88459 0.85556 0.86348 0.76239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 7.37 71.98 0.53 -3.19 16 2 C -0.11 -3.47 1.61 -11.54 -0.02 -3.49 16 3 H 0.11 3.03 7.29 -2.39 -0.02 3.01 16 4 C 0.47 21.78 6.02 87.66 0.53 22.31 16 5 O -0.59 -32.70 12.61 -3.06 -0.04 -32.74 16 6 N -0.46 -21.22 2.48 -609.36 -1.51 -22.73 16 7 C -0.33 -17.55 7.56 84.04 0.64 -16.92 16 8 H 0.07 3.66 6.90 -2.91 -0.02 3.64 16 9 C 0.02 1.28 4.46 84.93 0.38 1.65 16 10 N -0.86 -50.30 11.52 21.66 0.25 -50.05 16 11 Si 0.95 45.79 29.59 68.60 2.03 47.82 16 12 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 14 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 15 C 0.12 4.05 2.34 45.72 0.11 4.16 16 16 C -0.13 -4.19 6.43 31.70 0.20 -3.98 16 17 C -0.11 -2.73 6.91 31.91 0.22 -2.51 16 18 C -0.12 -3.09 6.83 31.67 0.22 -2.87 16 19 C -0.13 -3.99 6.10 31.32 0.19 -3.80 16 20 C 0.15 4.49 2.96 45.44 0.13 4.62 16 21 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 22 C -0.11 -1.99 6.32 31.65 0.20 -1.79 16 23 C -0.15 -2.86 6.08 30.61 0.19 -2.67 16 24 C 0.50 16.53 7.15 87.91 0.63 17.16 16 25 O -0.60 -25.16 18.03 -3.02 -0.05 -25.22 16 26 N -0.71 -24.98 4.74 -439.37 -2.08 -27.07 16 27 H 0.06 1.71 5.89 -2.39 -0.01 1.70 16 28 H 0.10 1.77 5.94 -2.38 -0.01 1.75 16 29 H 0.03 1.05 6.42 -2.39 -0.02 1.03 16 30 H 0.25 14.58 8.32 -92.71 -0.77 13.81 16 31 H 0.10 2.87 4.37 -2.39 -0.01 2.86 16 32 H 0.04 1.78 7.21 -2.39 -0.02 1.77 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.57 6.68 -2.39 -0.02 1.56 16 40 H 0.13 1.43 7.86 -2.39 -0.02 1.42 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.13 1.96 6.24 -2.39 -0.01 1.94 16 43 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.40 16.72 7.99 -92.71 -0.74 15.98 16 Total: -1.00 -76.18 332.79 3.01 -73.18 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.28 Total: 28.13 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 4.14 Total: 8.68 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -3.35 Total: -99.85 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -0.09 Total: -57.96 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -76.18 3.01 -73.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599539770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.077 kcal (2) G-P(sol) polarization free energy of solvation -76.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds