Wall clock time and date at job start Tue Mar 31 2020 07:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47591 * 2 1 4 4 C 1.46502 * 119.99554 * 270.00488 * 3 2 1 5 5 C 1.50710 * 109.46745 * 269.99274 * 4 3 2 6 6 C 1.41374 * 126.57834 * 90.00263 * 5 4 3 7 7 C 1.34514 * 106.84115 * 179.97438 * 6 5 4 8 8 O 1.34302 * 108.41967 * 0.02562 * 7 6 5 9 9 C 1.34303 * 109.47401 * 359.76783 * 8 7 6 10 10 C 1.34774 * 120.00368 * 89.99388 * 3 2 1 11 11 O 1.21276 * 120.00504 * 180.02562 * 10 3 2 12 12 C 1.50702 * 119.99654 * 0.02562 * 10 3 2 13 13 H 1.08997 * 109.47338 * 319.99164 * 12 10 3 14 14 N 1.46907 * 109.46914 * 199.99757 * 12 10 3 15 15 C 1.52996 * 109.47417 * 79.99812 * 12 10 3 16 16 C 1.52997 * 109.47131 * 184.99962 * 15 12 10 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47454 * 59.99696 * 22 20 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47261 * 299.99689 * 22 20 18 26 26 H 1.08997 * 109.47009 * 59.99735 * 1 2 3 27 27 H 1.08991 * 109.47574 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47202 * 300.00304 * 1 2 3 29 29 H 1.09001 * 109.47438 * 239.99663 * 2 1 3 30 30 H 1.09003 * 109.46975 * 119.99803 * 2 1 3 31 31 H 1.08994 * 109.47582 * 29.99520 * 4 3 2 32 32 H 1.08996 * 109.47021 * 149.99990 * 4 3 2 33 33 H 1.08006 * 126.58034 * 359.97438 * 6 5 4 34 34 H 1.08004 * 125.79082 * 179.97438 * 7 6 5 35 35 H 1.08003 * 125.78688 * 180.24446 * 9 8 7 36 36 H 1.00896 * 110.99864 * 176.04430 * 14 12 10 37 37 H 1.00898 * 110.99789 * 299.99806 * 14 12 10 38 38 H 1.08996 * 109.47452 * 64.99962 * 15 12 10 39 39 H 1.09001 * 109.46997 * 304.99536 * 15 12 10 40 40 H 1.09001 * 109.47502 * 60.00153 * 16 15 12 41 41 H 1.09001 * 109.47289 * 299.99950 * 16 15 12 42 42 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 43 43 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 44 44 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 6 4.1538 0.7755 -2.5146 7 6 5.4806 0.9477 -2.6535 8 8 5.8391 2.0488 -1.9731 9 6 4.7540 2.5935 -1.3991 10 6 2.2430 2.0166 1.1671 11 8 2.6469 3.1601 1.1672 12 6 1.9922 1.3061 2.4723 13 1 1.0817 0.7121 2.3935 14 7 1.8395 2.2958 3.5471 15 6 3.1744 0.3879 2.7886 16 6 2.8659 -0.4256 4.0470 17 6 4.0480 -1.3443 4.3630 18 6 3.7438 -2.1461 5.6022 19 1 2.8018 -2.0134 6.1135 20 6 4.6685 -3.0483 6.0837 21 7 5.8158 -3.2096 5.4614 22 14 4.2918 -4.0417 7.6202 23 1 3.0748 -4.8618 7.3935 24 1 5.4391 -4.9334 7.9268 25 1 4.0619 -3.1199 8.7616 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0956 3.1409 -1.1385 33 1 3.5599 -0.0196 -2.9408 34 1 6.1451 0.3085 -3.2159 35 1 4.7414 3.4879 -0.7938 36 1 1.6066 1.8478 4.4207 37 1 2.6711 2.8595 3.6403 38 1 4.0677 0.9899 2.9551 39 1 3.3432 -0.2887 1.9508 40 1 1.9727 -1.0278 3.8806 41 1 2.6970 0.2509 4.8848 42 1 4.2163 -2.0210 3.5252 43 1 4.9414 -0.7426 4.5293 44 1 6.4665 -3.8440 5.8003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600757212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:34 Heat of formation + Delta-G solvation = -36.657501 kcal Electronic energy + Delta-G solvation = -24040.857464 eV Core-core repulsion = 20573.374526 eV Total energy + Delta-G solvation = -3467.482939 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.62677 -40.11138 -36.40083 -35.97900 -33.67185 -33.25915 -31.25344 -30.89390 -29.60281 -28.16795 -26.75552 -24.83064 -23.56380 -22.16437 -21.64770 -20.56996 -20.17397 -18.94719 -17.67433 -17.25430 -16.49193 -16.30850 -15.83942 -15.26403 -14.91260 -14.69787 -14.58765 -14.44604 -13.93437 -13.56878 -13.55039 -13.29177 -12.90895 -12.73783 -12.56538 -12.43145 -12.27914 -11.84210 -11.72255 -11.54729 -11.36116 -11.06652 -10.75612 -10.72539 -10.59141 -10.03007 -9.79640 -9.64661 -9.37116 -9.15304 -8.81505 -8.63723 -8.44458 -8.37857 -6.03525 -4.06766 1.68462 2.32858 2.74013 3.08788 3.18550 3.30453 3.35269 3.37367 4.41203 4.45660 4.70982 4.75830 4.82075 4.87959 4.97056 5.10668 5.23602 5.25081 5.29299 5.32337 5.33838 5.47640 5.61178 5.62595 5.66714 5.81169 5.88896 5.96460 6.05634 6.07370 6.25963 6.37152 6.46074 6.56501 6.73531 7.00951 7.03164 7.15973 7.42197 7.61109 7.62222 7.74373 7.95274 8.26409 8.37107 9.00141 9.57768 11.07637 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003628 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.106191 B = 7715.261345 C = 8466.339450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 N -0.608 5.608 4 C 0.187 3.813 5 C -0.205 4.205 6 C -0.203 4.203 7 C -0.046 4.046 8 O -0.178 6.178 9 C -0.012 4.012 10 C 0.529 3.471 11 O -0.536 6.536 12 C 0.074 3.926 13 H 0.100 0.900 14 N -0.830 5.830 15 C -0.148 4.148 16 C -0.108 4.108 17 C 0.023 3.977 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.200 0.800 35 H 0.203 0.797 36 H 0.351 0.649 37 H 0.348 0.652 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 8.090 -17.036 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 N -0.342 5.342 4 C 0.064 3.936 5 C -0.207 4.207 6 C -0.223 4.223 7 C -0.113 4.113 8 O -0.073 6.073 9 C -0.081 4.081 10 C 0.317 3.683 11 O -0.412 6.412 12 C -0.041 4.041 13 H 0.118 0.882 14 N -0.362 5.362 15 C -0.187 4.187 16 C -0.146 4.146 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.164 0.836 34 H 0.217 0.783 35 H 0.220 0.780 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.420 9.016 -17.436 20.984 hybrid contribution 0.571 -1.475 1.198 1.984 sum -6.849 7.541 -16.238 19.169 Atomic orbital electron populations 1.22227 0.95741 1.02519 1.02501 1.21738 0.94411 0.82300 1.04189 1.48009 1.66318 1.14538 1.05350 1.19599 0.90437 0.98650 0.84903 1.20787 0.97490 0.98197 1.04270 1.21694 0.95091 1.01337 1.04135 1.24004 0.96353 0.90370 1.00614 1.84094 1.35917 1.34968 1.52326 1.24069 0.83425 1.00573 1.00027 1.20722 0.76086 0.86257 0.85194 1.90611 1.45326 1.17941 1.87307 1.21505 1.00130 0.92688 0.89817 0.88240 1.58712 1.43620 1.24878 1.08983 1.22444 0.97081 0.98512 1.00704 1.21652 1.01113 0.97804 0.94005 1.19068 0.92235 0.93613 0.96504 1.21203 1.02299 1.21877 1.10740 0.92734 1.25023 0.95068 0.97092 0.97195 1.69952 1.07352 1.36075 1.40057 0.86663 0.77768 0.80074 0.83524 1.20222 1.21276 1.20213 0.92478 0.91225 0.92083 0.90307 0.89204 0.89808 0.89210 0.83648 0.78304 0.78046 0.83452 0.83822 0.91833 0.91515 0.93075 0.93318 0.96679 0.96751 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.10 37.15 0.38 -1.08 16 2 C 0.10 0.97 5.68 -4.04 -0.02 0.94 16 3 N -0.61 -7.25 2.46 -175.06 -0.43 -7.68 16 4 C 0.19 2.00 5.92 -5.19 -0.03 1.97 16 5 C -0.20 -2.37 5.75 -104.74 -0.60 -2.98 16 6 C -0.20 -2.11 10.87 -39.71 -0.43 -2.54 16 7 C -0.05 -0.47 12.09 29.42 0.36 -0.12 16 8 O -0.18 -2.23 10.65 5.71 0.06 -2.17 16 9 C -0.01 -0.15 12.01 29.41 0.35 0.21 16 10 C 0.53 7.78 6.92 -10.99 -0.08 7.71 16 11 O -0.54 -9.24 15.83 5.56 0.09 -9.15 16 12 C 0.07 1.05 2.36 -68.86 -0.16 0.89 16 13 H 0.10 1.31 6.12 -51.93 -0.32 0.99 16 14 N -0.83 -11.91 8.94 -5.65 -0.05 -11.96 16 15 C -0.15 -2.43 4.51 -26.73 -0.12 -2.55 16 16 C -0.11 -2.07 4.92 -26.73 -0.13 -2.20 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 19 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 22 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.58 7.16 -51.92 -0.37 0.20 16 29 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 30 H 0.09 1.01 4.83 -51.93 -0.25 0.76 16 31 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.09 1.03 7.42 -51.93 -0.39 0.64 16 33 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.20 1.33 8.06 -52.48 -0.42 0.90 16 35 H 0.20 2.32 8.06 -52.48 -0.42 1.90 16 36 H 0.35 4.72 7.55 -39.29 -0.30 4.42 16 37 H 0.35 5.17 8.58 -39.29 -0.34 4.84 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.09 6.43 -51.93 -0.33 0.75 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -32.74 362.87 -7.03 -39.77 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.83 Total: 7.99 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -1.04 Total: -12.63 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.26 Total: -45.69 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.15 Total: -11.31 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.74 -7.03 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600757212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.109 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds