Wall clock time and date at job start Tue Mar 31 2020 07:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47591 * 2 1 4 4 C 1.46502 * 119.99554 * 270.00488 * 3 2 1 5 5 C 1.50710 * 109.46745 * 269.99274 * 4 3 2 6 6 C 1.41374 * 126.57834 * 90.00263 * 5 4 3 7 7 C 1.34514 * 106.84115 * 179.97438 * 6 5 4 8 8 O 1.34302 * 108.41967 * 0.02562 * 7 6 5 9 9 C 1.34303 * 109.47401 * 359.76783 * 8 7 6 10 10 C 1.34774 * 120.00368 * 89.99388 * 3 2 1 11 11 O 1.21276 * 120.00504 * 180.02562 * 10 3 2 12 12 C 1.50702 * 119.99654 * 0.02562 * 10 3 2 13 13 H 1.08997 * 109.47338 * 319.99164 * 12 10 3 14 14 N 1.46907 * 109.46914 * 199.99757 * 12 10 3 15 15 C 1.52996 * 109.47417 * 79.99812 * 12 10 3 16 16 C 1.52997 * 109.47131 * 184.99962 * 15 12 10 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47454 * 59.99696 * 22 20 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47261 * 299.99689 * 22 20 18 26 26 H 1.08997 * 109.47009 * 59.99735 * 1 2 3 27 27 H 1.08991 * 109.47574 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47202 * 300.00304 * 1 2 3 29 29 H 1.09001 * 109.47438 * 239.99663 * 2 1 3 30 30 H 1.09003 * 109.46975 * 119.99803 * 2 1 3 31 31 H 1.08994 * 109.47582 * 29.99520 * 4 3 2 32 32 H 1.08996 * 109.47021 * 149.99990 * 4 3 2 33 33 H 1.08006 * 126.58034 * 359.97438 * 6 5 4 34 34 H 1.08004 * 125.79082 * 179.97438 * 7 6 5 35 35 H 1.08003 * 125.78688 * 180.24446 * 9 8 7 36 36 H 1.00896 * 110.99864 * 176.04430 * 14 12 10 37 37 H 1.00898 * 110.99789 * 299.99806 * 14 12 10 38 38 H 1.08996 * 109.47452 * 64.99962 * 15 12 10 39 39 H 1.09001 * 109.46997 * 304.99536 * 15 12 10 40 40 H 1.09001 * 109.47502 * 60.00153 * 16 15 12 41 41 H 1.09001 * 109.47289 * 299.99950 * 16 15 12 42 42 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 43 43 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 44 44 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 6 4.1538 0.7755 -2.5146 7 6 5.4806 0.9477 -2.6535 8 8 5.8391 2.0488 -1.9731 9 6 4.7540 2.5935 -1.3991 10 6 2.2430 2.0166 1.1671 11 8 2.6469 3.1601 1.1672 12 6 1.9922 1.3061 2.4723 13 1 1.0817 0.7121 2.3935 14 7 1.8395 2.2958 3.5471 15 6 3.1744 0.3879 2.7886 16 6 2.8659 -0.4256 4.0470 17 6 4.0480 -1.3443 4.3630 18 6 3.7438 -2.1461 5.6022 19 1 2.8018 -2.0134 6.1135 20 6 4.6685 -3.0483 6.0837 21 7 5.8158 -3.2096 5.4614 22 14 4.2918 -4.0417 7.6202 23 1 3.0748 -4.8618 7.3935 24 1 5.4391 -4.9334 7.9268 25 1 4.0619 -3.1199 8.7616 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0956 3.1409 -1.1385 33 1 3.5599 -0.0196 -2.9408 34 1 6.1451 0.3085 -3.2159 35 1 4.7414 3.4879 -0.7938 36 1 1.6066 1.8478 4.4207 37 1 2.6711 2.8595 3.6403 38 1 4.0677 0.9899 2.9551 39 1 3.3432 -0.2887 1.9508 40 1 1.9727 -1.0278 3.8806 41 1 2.6970 0.2509 4.8848 42 1 4.2163 -2.0210 3.5252 43 1 4.9414 -0.7426 4.5293 44 1 6.4665 -3.8440 5.8003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600757212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:33 Heat of formation + Delta-G solvation = -57.966106 kcal Electronic energy + Delta-G solvation = -24041.781475 eV Core-core repulsion = 20573.374526 eV Total energy + Delta-G solvation = -3468.406949 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.49063 -41.21140 -37.60006 -37.18663 -35.33130 -34.40310 -33.00135 -31.70253 -30.46211 -29.58448 -28.08392 -26.23358 -24.66745 -23.59394 -22.46539 -21.84073 -21.45257 -19.97289 -18.69990 -18.46236 -18.21292 -17.43104 -16.79598 -16.52869 -16.30690 -16.10952 -15.89129 -15.54274 -14.87345 -14.76982 -14.72008 -14.28691 -14.15769 -13.89483 -13.67742 -13.64030 -13.45037 -13.34530 -12.94656 -12.73931 -12.59909 -12.43803 -12.39844 -12.21661 -11.94894 -11.49407 -11.42618 -11.28605 -10.93437 -10.55994 -10.55008 -9.79351 -9.68795 -9.47052 -8.20232 -6.31910 0.80241 1.40651 1.43290 1.46403 1.51175 1.61385 2.23406 2.28011 2.40999 3.13252 3.45071 3.66027 3.88072 3.93270 3.95051 4.01934 4.09268 4.13959 4.34113 4.38654 4.46641 4.54749 4.59273 4.67543 4.73749 4.79377 4.91926 4.95697 5.01200 5.08749 5.17333 5.21520 5.24279 5.38979 5.50817 5.55610 5.59449 5.70796 5.83871 6.02198 6.17771 6.22917 6.38055 6.47404 6.85622 7.16363 7.38076 8.91323 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003628 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.106191 B = 7715.261345 C = 8466.339450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 N -0.601 5.601 4 C 0.186 3.814 5 C -0.208 4.208 6 C -0.210 4.210 7 C -0.050 4.050 8 O -0.196 6.196 9 C -0.040 4.040 10 C 0.523 3.477 11 O -0.568 6.568 12 C 0.083 3.917 13 H 0.118 0.882 14 N -0.830 5.830 15 C -0.134 4.134 16 C -0.093 4.093 17 C 0.025 3.975 18 C -0.542 4.542 19 H 0.064 0.936 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.268 1.268 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.171 0.829 34 H 0.233 0.767 35 H 0.198 0.802 36 H 0.356 0.644 37 H 0.344 0.656 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.055 0.945 42 H -0.009 1.009 43 H -0.018 1.018 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 6.920 -17.495 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.031 4.031 3 N -0.333 5.333 4 C 0.064 3.936 5 C -0.210 4.210 6 C -0.229 4.229 7 C -0.117 4.117 8 O -0.092 6.092 9 C -0.108 4.108 10 C 0.311 3.689 11 O -0.446 6.446 12 C -0.032 4.032 13 H 0.136 0.864 14 N -0.362 5.362 15 C -0.173 4.173 16 C -0.130 4.130 17 C -0.012 4.012 18 C -0.580 4.580 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.788 3.212 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.192 1.192 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.188 0.812 34 H 0.249 0.751 35 H 0.215 0.785 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.009 0.991 43 H 0.000 1.000 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.364 7.833 -17.912 21.676 hybrid contribution 1.202 -1.131 1.272 2.084 sum -8.162 6.702 -16.640 19.708 Atomic orbital electron populations 1.22176 0.94146 1.03507 1.02525 1.21919 0.95667 0.80986 1.04497 1.48065 1.65116 1.15167 1.04963 1.19741 0.90698 0.98248 0.84925 1.20996 0.97561 0.98351 1.04106 1.22021 0.95396 1.01555 1.03905 1.24774 0.97288 0.89719 0.99911 1.84078 1.36305 1.35944 1.52879 1.24183 0.84062 1.01375 1.01225 1.20785 0.76049 0.86015 0.86046 1.90599 1.46910 1.19322 1.87805 1.21427 0.99568 0.92266 0.89919 0.86448 1.58728 1.43341 1.24818 1.09346 1.22247 0.97386 0.98282 0.99423 1.21425 0.98855 0.97212 0.95546 1.18983 0.93447 0.93651 0.95111 1.21685 1.02690 1.22101 1.11537 0.91767 1.25986 0.94792 0.98387 1.00669 1.70096 1.08508 1.36985 1.41979 0.85521 0.77892 0.78488 0.79285 1.18846 1.21122 1.19247 0.91389 0.89742 0.93125 0.88461 0.90488 0.86730 0.90306 0.81166 0.75122 0.78514 0.82870 0.84246 0.93819 0.91395 0.91633 0.92586 0.99052 0.99978 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.10 71.98 0.73 -1.59 16 2 C 0.09 1.61 5.68 86.38 0.49 2.10 16 3 N -0.60 -13.48 2.46 -826.15 -2.03 -15.51 16 4 C 0.19 3.72 5.92 85.64 0.51 4.22 16 5 C -0.21 -4.64 5.75 -19.94 -0.11 -4.76 16 6 C -0.21 -3.94 10.87 22.19 0.24 -3.70 16 7 C -0.05 -0.97 12.09 66.97 0.81 -0.16 16 8 O -0.20 -4.94 10.65 -2.48 -0.03 -4.97 16 9 C -0.04 -1.01 12.01 66.97 0.80 -0.21 16 10 C 0.52 15.13 6.92 87.66 0.61 15.73 16 11 O -0.57 -19.79 15.83 -3.02 -0.05 -19.84 16 12 C 0.08 2.31 2.36 44.17 0.10 2.41 16 13 H 0.12 2.85 6.12 -2.39 -0.01 2.83 16 14 N -0.83 -23.28 8.94 -171.79 -1.54 -24.82 16 15 C -0.13 -4.38 4.51 30.59 0.14 -4.24 16 16 C -0.09 -3.52 4.92 30.60 0.15 -3.37 16 17 C 0.03 1.30 4.97 29.85 0.15 1.45 16 18 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 20 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 21 N -0.94 -56.88 13.29 21.45 0.28 -56.59 16 22 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.83 7.16 -2.38 -0.02 0.81 16 29 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 30 H 0.08 1.59 4.83 -2.39 -0.01 1.57 16 31 H 0.11 1.57 8.07 -2.39 -0.02 1.56 16 32 H 0.08 1.77 7.42 -2.39 -0.02 1.75 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.23 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.20 4.91 8.06 -2.91 -0.02 4.89 16 36 H 0.36 9.16 7.55 -89.70 -0.68 8.48 16 37 H 0.34 10.27 8.58 -89.70 -0.77 9.50 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 2.20 6.43 -2.39 -0.02 2.19 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.04 6.87 -2.39 -0.02 2.02 16 42 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -71.46 362.87 3.54 -67.92 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -0.44 Total: 29.82 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 5.31 Total: -21.61 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -3.28 Total: -96.91 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -71.46 3.54 -67.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600757212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.953 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds