Wall clock time and date at job start Tue Mar 31 2020 07:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.46746 * 2 1 4 4 C 1.46506 * 120.00211 * 274.71428 * 3 2 1 5 5 C 1.50700 * 109.46831 * 270.00550 * 4 3 2 6 6 C 1.41375 * 126.58345 * 89.99922 * 5 4 3 7 7 C 1.34521 * 106.84489 * 179.97438 * 6 5 4 8 8 O 1.34305 * 108.41518 * 0.02562 * 7 6 5 9 9 C 1.34306 * 109.47860 * 359.76707 * 8 7 6 10 10 C 1.34775 * 120.00165 * 94.71352 * 3 2 1 11 11 O 1.21283 * 120.00167 * 184.93832 * 10 3 2 12 12 C 1.50697 * 119.99928 * 4.94395 * 10 3 2 13 13 H 1.09001 * 109.47352 * 27.89414 * 12 10 3 14 14 N 1.46899 * 109.47594 * 147.90158 * 12 10 3 15 15 C 1.53006 * 109.46914 * 267.89956 * 12 10 3 16 16 C 1.52996 * 109.47145 * 176.50528 * 15 12 10 17 17 C 1.53006 * 109.46922 * 180.02562 * 16 15 12 18 18 C 1.50702 * 109.46892 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00041 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99751 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00056 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00152 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.46905 * 90.00214 * 22 20 18 24 24 H 1.48504 * 109.47367 * 209.99654 * 22 20 18 25 25 H 1.48491 * 109.47245 * 330.00049 * 22 20 18 26 26 H 1.09000 * 109.47613 * 53.27166 * 1 2 3 27 27 H 1.09004 * 109.46901 * 173.26776 * 1 2 3 28 28 H 1.09006 * 109.47611 * 293.26817 * 1 2 3 29 29 H 1.08999 * 109.47442 * 240.00429 * 2 1 3 30 30 H 1.08997 * 109.47174 * 119.99674 * 2 1 3 31 31 H 1.09005 * 109.46726 * 29.99700 * 4 3 2 32 32 H 1.08993 * 109.47542 * 150.00141 * 4 3 2 33 33 H 1.08000 * 126.58446 * 359.97438 * 6 5 4 34 34 H 1.08000 * 125.79067 * 179.97438 * 7 6 5 35 35 H 1.08003 * 125.78861 * 180.24399 * 9 8 7 36 36 H 1.00904 * 110.99881 * 59.99594 * 14 12 10 37 37 H 1.00900 * 111.00299 * 183.95063 * 14 12 10 38 38 H 1.09000 * 109.46963 * 56.50066 * 15 12 10 39 39 H 1.08997 * 109.46998 * 296.50536 * 15 12 10 40 40 H 1.09000 * 109.47568 * 59.99907 * 16 15 12 41 41 H 1.09001 * 109.46784 * 299.99598 * 16 15 12 42 42 H 1.09001 * 109.46803 * 299.99269 * 17 16 15 43 43 H 1.08991 * 109.47531 * 59.99512 * 17 16 15 44 44 H 0.96998 * 119.99908 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1640 2.1067 -1.2645 5 6 3.5490 1.8834 -1.8148 6 6 3.9517 0.8472 -2.6882 7 6 5.2640 1.0246 -2.9246 8 8 5.6752 2.1070 -2.2440 9 6 4.6384 2.6346 -1.5729 10 6 2.3332 1.9847 1.1632 11 8 2.6515 3.1550 1.1726 12 6 2.2901 1.2052 2.4522 13 1 2.4800 0.1518 2.2464 14 7 3.3169 1.7179 3.3692 15 6 0.9101 1.3585 3.0950 16 6 0.8372 0.4979 4.3578 17 6 -0.5431 0.6507 5.0002 18 6 -0.6150 -0.1975 6.2438 19 1 0.2385 -0.7863 6.5460 20 6 -1.7700 -0.2210 6.9962 21 7 -1.8331 -0.9616 8.0812 22 14 -3.2455 0.7990 6.4746 23 1 -4.1106 -0.0059 5.5751 24 1 -4.0195 1.2006 7.6767 25 1 -2.7795 2.0129 5.7575 26 1 -0.3634 0.6145 -0.8236 27 1 -0.3633 -1.0206 -0.1205 28 1 -0.3634 0.4060 0.9441 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4260 1.7427 -1.9793 32 1 2.0087 3.1717 -1.0924 33 1 3.3259 0.0635 -3.0888 34 1 5.8822 0.4018 -3.5542 35 1 4.6737 3.5120 -0.9442 36 1 3.1627 2.6935 3.5757 37 1 3.3516 1.1702 4.2159 38 1 0.1434 1.0358 2.3906 39 1 0.7455 2.4035 3.3574 40 1 1.6039 0.8206 5.0622 41 1 1.0017 -0.5472 4.0953 42 1 -0.7079 1.6957 5.2627 43 1 -1.3094 0.3278 4.2957 44 1 -2.6456 -0.9778 8.6108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600757213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:36 Heat of formation + Delta-G solvation = -30.000527 kcal Electronic energy + Delta-G solvation = -23891.129643 eV Core-core repulsion = 20423.935373 eV Total energy + Delta-G solvation = -3467.194271 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.74856 -40.18876 -36.52877 -36.04990 -33.74473 -33.28338 -31.48546 -30.97536 -29.69482 -28.38541 -27.12844 -24.93353 -23.46052 -22.19443 -21.76776 -20.61853 -20.20326 -18.84709 -17.81345 -17.38733 -16.77412 -16.59428 -15.96314 -15.38260 -15.02994 -14.87700 -14.57434 -14.28124 -14.04589 -13.84381 -13.38367 -13.26136 -13.02905 -12.94309 -12.68830 -12.59914 -12.31673 -12.20375 -11.77841 -11.74537 -11.56310 -11.09653 -10.98111 -10.67258 -10.16274 -10.00396 -9.87893 -9.78164 -9.50656 -9.24295 -8.90727 -8.72898 -8.58420 -8.52720 -6.08379 -4.06802 1.56077 2.21038 2.66105 2.96197 3.09693 3.26890 3.35109 3.38651 4.37159 4.41400 4.60074 4.65587 4.69461 4.77904 4.88331 5.08457 5.09408 5.15536 5.21573 5.25563 5.32263 5.40561 5.50916 5.53204 5.63268 5.77061 5.78626 5.85223 5.95302 5.98897 6.22898 6.25469 6.39081 6.43920 6.57400 6.79873 6.90922 7.10202 7.21511 7.33115 7.35487 7.55779 7.74698 8.17660 8.48985 8.96161 9.54203 11.05030 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.003064 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.429335 B = 9136.226629 C = 9449.195268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 N -0.609 5.609 4 C 0.185 3.815 5 C -0.204 4.204 6 C -0.202 4.202 7 C -0.049 4.049 8 O -0.179 6.179 9 C -0.011 4.011 10 C 0.531 3.469 11 O -0.538 6.538 12 C 0.074 3.926 13 H 0.100 0.900 14 N -0.832 5.832 15 C -0.154 4.154 16 C -0.100 4.100 17 C -0.012 4.012 18 C -0.522 4.522 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.266 1.266 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.200 0.800 35 H 0.203 0.797 36 H 0.349 0.651 37 H 0.353 0.647 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.014 0.986 43 H 0.010 0.990 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 3.027 -23.420 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 N -0.342 5.342 4 C 0.062 3.938 5 C -0.206 4.206 6 C -0.222 4.222 7 C -0.116 4.116 8 O -0.074 6.074 9 C -0.080 4.080 10 C 0.319 3.681 11 O -0.414 6.414 12 C -0.041 4.041 13 H 0.117 0.883 14 N -0.364 5.364 15 C -0.193 4.193 16 C -0.138 4.138 17 C -0.050 4.050 18 C -0.560 4.560 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.191 1.191 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.164 0.836 34 H 0.217 0.783 35 H 0.220 0.780 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.870 3.535 -23.834 26.433 hybrid contribution -1.930 0.316 0.440 2.005 sum 8.939 3.851 -23.394 25.338 Atomic orbital electron populations 1.22356 0.95459 1.02693 1.03150 1.21666 0.94669 0.82232 1.03559 1.48017 1.65918 1.14567 1.05731 1.19599 0.91300 0.98365 0.84527 1.20795 0.97759 0.98567 1.03510 1.21710 0.95755 1.01658 1.03070 1.23991 0.95867 0.91000 1.00738 1.84091 1.37351 1.36357 1.49564 1.24087 0.84528 1.00727 0.98608 1.20700 0.75077 0.87340 0.84947 1.90619 1.47430 1.16516 1.86816 1.21519 0.92552 0.99140 0.90899 0.88271 1.58738 1.49028 1.08727 1.19946 1.22551 0.95496 1.01901 0.99392 1.21470 1.00273 0.98153 0.93907 1.19551 0.92270 0.97014 0.96141 1.21137 1.00711 1.26875 1.07244 0.91030 1.25037 0.98632 0.95111 0.94714 1.69914 1.28178 1.40156 1.15947 0.86784 0.82958 0.81378 0.78195 1.20299 1.21360 1.19071 0.92404 0.91149 0.91319 0.90587 0.89524 0.89732 0.89071 0.83635 0.78330 0.77995 0.83722 0.83200 0.91156 0.91674 0.92752 0.92498 0.96753 0.97125 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 10.24 37.15 0.38 -1.22 16 2 C 0.10 0.92 6.09 -4.04 -0.02 0.90 16 3 N -0.61 -6.83 2.46 -175.06 -0.43 -7.26 16 4 C 0.18 1.86 5.98 -5.19 -0.03 1.83 16 5 C -0.20 -2.12 5.75 -104.75 -0.60 -2.72 16 6 C -0.20 -1.79 10.87 -39.70 -0.43 -2.22 16 7 C -0.05 -0.41 12.09 29.42 0.36 -0.05 16 8 O -0.18 -1.93 10.65 5.69 0.06 -1.87 16 9 C -0.01 -0.12 12.01 29.42 0.35 0.24 16 10 C 0.53 7.47 6.82 -10.99 -0.07 7.39 16 11 O -0.54 -8.98 15.94 5.55 0.09 -8.89 16 12 C 0.07 1.00 2.62 -68.86 -0.18 0.82 16 13 H 0.10 1.24 5.84 -51.93 -0.30 0.94 16 14 N -0.83 -11.54 9.03 -5.65 -0.05 -11.59 16 15 C -0.15 -2.34 4.85 -26.73 -0.13 -2.47 16 16 C -0.10 -1.83 4.89 -26.73 -0.13 -1.96 16 17 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 18 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 19 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 22 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.75 5.34 -51.93 -0.28 0.47 16 29 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 30 H 0.09 0.81 5.53 -51.93 -0.29 0.52 16 31 H 0.08 0.67 8.07 -51.93 -0.42 0.26 16 32 H 0.09 1.01 7.36 -51.93 -0.38 0.63 16 33 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.20 2.09 8.06 -52.48 -0.42 1.66 16 36 H 0.35 4.99 8.55 -39.29 -0.34 4.65 16 37 H 0.35 4.63 7.50 -39.29 -0.29 4.34 16 38 H 0.07 1.02 5.34 -51.93 -0.28 0.74 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.98 6.83 -51.93 -0.35 0.62 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 43 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -33.20 357.90 -6.56 -39.75 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.67 Total: 7.39 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.06 Total: -12.97 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.29 Total: -45.74 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.15 Total: -10.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.20 -6.56 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600757213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.753 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds