Wall clock time and date at job start Tue Mar 31 2020 07:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.46746 * 2 1 4 4 C 1.46506 * 120.00211 * 274.71428 * 3 2 1 5 5 C 1.50700 * 109.46831 * 270.00550 * 4 3 2 6 6 C 1.41375 * 126.58345 * 89.99922 * 5 4 3 7 7 C 1.34521 * 106.84489 * 179.97438 * 6 5 4 8 8 O 1.34305 * 108.41518 * 0.02562 * 7 6 5 9 9 C 1.34306 * 109.47860 * 359.76707 * 8 7 6 10 10 C 1.34775 * 120.00165 * 94.71352 * 3 2 1 11 11 O 1.21283 * 120.00167 * 184.93832 * 10 3 2 12 12 C 1.50697 * 119.99928 * 4.94395 * 10 3 2 13 13 H 1.09001 * 109.47352 * 27.89414 * 12 10 3 14 14 N 1.46899 * 109.47594 * 147.90158 * 12 10 3 15 15 C 1.53006 * 109.46914 * 267.89956 * 12 10 3 16 16 C 1.52996 * 109.47145 * 176.50528 * 15 12 10 17 17 C 1.53006 * 109.46922 * 180.02562 * 16 15 12 18 18 C 1.50702 * 109.46892 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00041 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99751 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00056 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00152 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.46905 * 90.00214 * 22 20 18 24 24 H 1.48504 * 109.47367 * 209.99654 * 22 20 18 25 25 H 1.48491 * 109.47245 * 330.00049 * 22 20 18 26 26 H 1.09000 * 109.47613 * 53.27166 * 1 2 3 27 27 H 1.09004 * 109.46901 * 173.26776 * 1 2 3 28 28 H 1.09006 * 109.47611 * 293.26817 * 1 2 3 29 29 H 1.08999 * 109.47442 * 240.00429 * 2 1 3 30 30 H 1.08997 * 109.47174 * 119.99674 * 2 1 3 31 31 H 1.09005 * 109.46726 * 29.99700 * 4 3 2 32 32 H 1.08993 * 109.47542 * 150.00141 * 4 3 2 33 33 H 1.08000 * 126.58446 * 359.97438 * 6 5 4 34 34 H 1.08000 * 125.79067 * 179.97438 * 7 6 5 35 35 H 1.08003 * 125.78861 * 180.24399 * 9 8 7 36 36 H 1.00904 * 110.99881 * 59.99594 * 14 12 10 37 37 H 1.00900 * 111.00299 * 183.95063 * 14 12 10 38 38 H 1.09000 * 109.46963 * 56.50066 * 15 12 10 39 39 H 1.08997 * 109.46998 * 296.50536 * 15 12 10 40 40 H 1.09000 * 109.47568 * 59.99907 * 16 15 12 41 41 H 1.09001 * 109.46784 * 299.99598 * 16 15 12 42 42 H 1.09001 * 109.46803 * 299.99269 * 17 16 15 43 43 H 1.08991 * 109.47531 * 59.99512 * 17 16 15 44 44 H 0.96998 * 119.99908 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1640 2.1067 -1.2645 5 6 3.5490 1.8834 -1.8148 6 6 3.9517 0.8472 -2.6882 7 6 5.2640 1.0246 -2.9246 8 8 5.6752 2.1070 -2.2440 9 6 4.6384 2.6346 -1.5729 10 6 2.3332 1.9847 1.1632 11 8 2.6515 3.1550 1.1726 12 6 2.2901 1.2052 2.4522 13 1 2.4800 0.1518 2.2464 14 7 3.3169 1.7179 3.3692 15 6 0.9101 1.3585 3.0950 16 6 0.8372 0.4979 4.3578 17 6 -0.5431 0.6507 5.0002 18 6 -0.6150 -0.1975 6.2438 19 1 0.2385 -0.7863 6.5460 20 6 -1.7700 -0.2210 6.9962 21 7 -1.8331 -0.9616 8.0812 22 14 -3.2455 0.7990 6.4746 23 1 -4.1106 -0.0059 5.5751 24 1 -4.0195 1.2006 7.6767 25 1 -2.7795 2.0129 5.7575 26 1 -0.3634 0.6145 -0.8236 27 1 -0.3633 -1.0206 -0.1205 28 1 -0.3634 0.4060 0.9441 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4260 1.7427 -1.9793 32 1 2.0087 3.1717 -1.0924 33 1 3.3259 0.0635 -3.0888 34 1 5.8822 0.4018 -3.5542 35 1 4.6737 3.5120 -0.9442 36 1 3.1627 2.6935 3.5757 37 1 3.3516 1.1702 4.2159 38 1 0.1434 1.0358 2.3906 39 1 0.7455 2.4035 3.3574 40 1 1.6039 0.8206 5.0622 41 1 1.0017 -0.5472 4.0953 42 1 -0.7079 1.6957 5.2627 43 1 -1.3094 0.3278 4.2957 44 1 -2.6456 -0.9778 8.6108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600757213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:36 Heat of formation + Delta-G solvation = -52.417690 kcal Electronic energy + Delta-G solvation = -23892.101724 eV Core-core repulsion = 20423.935373 eV Total energy + Delta-G solvation = -3468.166352 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.47123 -41.21549 -37.64172 -37.18328 -35.28233 -34.38492 -33.26241 -31.70854 -30.44844 -29.80556 -28.26823 -26.25604 -24.31874 -23.65183 -22.44354 -21.86139 -21.37669 -19.79992 -18.91431 -18.72749 -18.20995 -17.51670 -16.78353 -16.51030 -16.19558 -16.16947 -15.85775 -15.45376 -15.13528 -14.89814 -14.75771 -14.29072 -14.08323 -14.03801 -13.76973 -13.67049 -13.51256 -13.33094 -13.09953 -12.90218 -12.55780 -12.41762 -12.29132 -11.94972 -11.78042 -11.65397 -11.35680 -11.30850 -10.95204 -10.76794 -10.54647 -9.81547 -9.66807 -9.46340 -8.29917 -6.33656 0.81931 1.33937 1.36711 1.46616 1.47917 1.61379 2.23054 2.29566 2.34953 3.05671 3.44307 3.66528 3.83857 3.89371 3.95081 4.00148 4.15192 4.17985 4.28145 4.39688 4.42336 4.52714 4.63856 4.67683 4.69605 4.79734 4.86158 4.96301 5.03628 5.04782 5.09825 5.11250 5.25985 5.40259 5.52456 5.57320 5.58583 5.60552 5.66641 6.03037 6.19663 6.27921 6.36914 6.45165 6.74867 7.14917 7.31308 8.86757 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.003064 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.429335 B = 9136.226629 C = 9449.195268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.184 3.816 5 C -0.207 4.207 6 C -0.210 4.210 7 C -0.047 4.047 8 O -0.194 6.194 9 C -0.037 4.037 10 C 0.526 3.474 11 O -0.571 6.571 12 C 0.079 3.921 13 H 0.115 0.885 14 N -0.835 5.835 15 C -0.140 4.140 16 C -0.091 4.091 17 C -0.011 4.011 18 C -0.530 4.530 19 H 0.035 0.965 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.948 3.052 23 H -0.263 1.263 24 H -0.286 1.286 25 H -0.251 1.251 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.170 0.830 34 H 0.235 0.765 35 H 0.196 0.804 36 H 0.346 0.654 37 H 0.356 0.644 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.011 0.989 43 H 0.020 0.980 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.370 2.595 -26.107 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.025 4.025 3 N -0.333 5.333 4 C 0.061 3.939 5 C -0.210 4.210 6 C -0.229 4.229 7 C -0.113 4.113 8 O -0.090 6.090 9 C -0.106 4.106 10 C 0.314 3.686 11 O -0.450 6.450 12 C -0.036 4.036 13 H 0.132 0.868 14 N -0.367 5.367 15 C -0.180 4.180 16 C -0.129 4.129 17 C -0.049 4.049 18 C -0.568 4.568 19 H 0.053 0.947 20 C -0.193 4.193 21 N -0.592 5.592 22 Si 0.772 3.228 23 H -0.188 1.188 24 H -0.212 1.212 25 H -0.175 1.175 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.188 0.812 34 H 0.251 0.749 35 H 0.213 0.787 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.038 0.962 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.240 3.081 -26.554 28.626 hybrid contribution -1.650 0.362 1.259 2.107 sum 8.590 3.443 -25.295 26.935 Atomic orbital electron populations 1.22322 0.95066 1.03630 1.02277 1.21870 0.94911 0.80967 1.04725 1.48074 1.64599 1.15352 1.05267 1.19706 0.92062 0.97650 0.84438 1.20934 0.97447 0.98955 1.03659 1.22008 0.96244 1.01822 1.02799 1.24786 0.96512 0.90116 0.99930 1.84082 1.37613 1.37321 1.50002 1.24134 0.85236 1.01481 0.99752 1.20750 0.75110 0.86947 0.85793 1.90607 1.49193 1.17859 1.87360 1.21487 0.91347 0.99974 0.90756 0.86763 1.58747 1.49153 1.08632 1.20213 1.22367 0.97078 1.00386 0.98155 1.21306 0.97400 0.99161 0.95006 1.19516 0.95376 0.95554 0.94415 1.21517 0.99502 1.26776 1.09052 0.94663 1.26006 1.02162 0.96470 0.94678 1.70068 1.29336 1.42253 1.17550 0.85686 0.78891 0.80138 0.78099 1.18824 1.21206 1.17473 0.91674 0.89674 0.93340 0.88162 0.89645 0.87046 0.90625 0.81208 0.74858 0.78694 0.84071 0.82888 0.89965 0.92800 0.93030 0.92044 0.97037 0.96181 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 10.24 71.98 0.74 -1.86 16 2 C 0.10 1.47 6.09 86.38 0.53 2.00 16 3 N -0.60 -12.31 2.46 -826.16 -2.03 -14.33 16 4 C 0.18 3.39 5.98 85.63 0.51 3.90 16 5 C -0.21 -4.00 5.75 -19.94 -0.11 -4.11 16 6 C -0.21 -3.11 10.87 22.19 0.24 -2.87 16 7 C -0.05 -0.68 12.09 66.97 0.81 0.13 16 8 O -0.19 -4.03 10.65 -2.54 -0.03 -4.06 16 9 C -0.04 -0.82 12.01 66.97 0.80 -0.01 16 10 C 0.53 14.26 6.82 87.66 0.60 14.86 16 11 O -0.57 -19.09 15.94 -3.04 -0.05 -19.14 16 12 C 0.08 2.06 2.62 44.17 0.12 2.17 16 13 H 0.11 2.63 5.84 -2.39 -0.01 2.61 16 14 N -0.83 -22.73 9.03 -171.80 -1.55 -24.28 16 15 C -0.14 -4.07 4.85 30.60 0.15 -3.92 16 16 C -0.09 -3.23 4.89 30.59 0.15 -3.08 16 17 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 18 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 19 H 0.04 2.18 7.99 -2.91 -0.02 2.16 16 20 C 0.00 0.20 5.47 84.65 0.46 0.67 16 21 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 22 Si 0.95 44.04 27.47 68.60 1.88 45.92 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.05 0.93 5.34 -2.38 -0.01 0.91 16 29 H 0.10 1.08 8.11 -2.39 -0.02 1.06 16 30 H 0.09 1.34 5.53 -2.39 -0.01 1.33 16 31 H 0.11 1.44 8.07 -2.38 -0.02 1.42 16 32 H 0.08 1.65 7.36 -2.39 -0.02 1.63 16 33 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 34 H 0.24 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.20 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.35 9.88 8.55 -89.69 -0.77 9.11 16 37 H 0.36 9.17 7.50 -89.69 -0.67 8.49 16 38 H 0.08 2.21 5.34 -2.39 -0.01 2.20 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.84 6.83 -2.39 -0.02 1.83 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 43 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -72.70 357.90 3.41 -69.29 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.48 Total: 28.01 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 5.36 Total: -22.31 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -3.28 Total: -97.72 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.08 Total: -23.20 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -72.70 3.41 -69.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600757213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.875 kcal (2) G-P(sol) polarization free energy of solvation -72.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds