Wall clock time and date at job start Tue Mar 31 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46915 * 2 1 4 4 C 1.53002 * 109.47407 * 239.99784 * 2 1 3 5 5 C 1.50694 * 109.46801 * 64.99758 * 4 2 1 6 6 H 1.07998 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.37886 * 119.99561 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99771 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99770 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.47075 * 90.00272 * 9 7 5 11 11 H 1.48504 * 109.47279 * 209.99841 * 9 7 5 12 12 H 1.48497 * 109.47389 * 330.00376 * 9 7 5 13 13 C 1.52999 * 109.47018 * 119.99479 * 2 1 3 14 14 N 1.46898 * 109.47430 * 298.65708 * 13 2 1 15 15 C 1.46958 * 111.00350 * 184.19099 * 14 13 2 16 16 C 1.53052 * 109.36489 * 183.18693 * 15 14 13 17 17 N 1.46950 * 109.36669 * 301.60008 * 16 15 14 18 18 C 1.46894 * 111.00281 * 183.18945 * 17 16 15 19 19 C 1.53005 * 109.47314 * 76.41825 * 18 17 16 20 20 F 1.39902 * 109.46726 * 53.98845 * 19 18 17 21 21 F 1.39902 * 109.47332 * 173.99129 * 19 18 17 22 22 F 1.39904 * 109.47061 * 293.99111 * 19 18 17 23 23 C 1.46952 * 110.88215 * 59.31638 * 17 16 15 24 24 C 1.46959 * 111.00200 * 307.98872 * 14 13 2 25 25 H 1.08999 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47498 * 300.00080 * 1 2 3 27 27 H 1.08999 * 109.46996 * 60.00206 * 1 2 3 28 28 H 1.09002 * 109.46846 * 184.99870 * 4 2 1 29 29 H 1.09004 * 109.46690 * 304.99964 * 4 2 1 30 30 H 0.97005 * 119.99610 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47286 * 178.65731 * 13 2 1 32 32 H 1.09001 * 109.47493 * 58.65440 * 13 2 1 33 33 H 1.08995 * 109.48731 * 63.21716 * 15 14 13 34 34 H 1.09005 * 109.48587 * 303.15503 * 15 14 13 35 35 H 1.09001 * 109.48684 * 181.63062 * 16 15 14 36 36 H 1.09005 * 109.48937 * 61.56607 * 16 15 14 37 37 H 1.08997 * 109.47714 * 196.42100 * 18 17 16 38 38 H 1.08999 * 109.47270 * 316.42286 * 18 17 16 39 39 H 1.09004 * 109.48613 * 60.65172 * 23 17 16 40 40 H 1.09003 * 109.49196 * 180.71105 * 23 17 16 41 41 H 1.08996 * 109.48852 * 296.78206 * 24 14 13 42 42 H 1.09001 * 109.48280 * 56.83966 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0807 0.9744 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6748 -1.5200 -3.8510 9 14 1.4989 0.5626 -5.2496 10 1 2.5650 1.5414 -5.5825 11 1 1.3111 -0.3713 -6.3889 12 1 0.2283 1.2849 -4.9870 13 6 2.0400 -0.7211 1.2493 14 7 1.5770 -0.0101 2.4485 15 6 2.1302 -0.6171 3.6672 16 6 1.5627 0.1005 4.8941 17 7 1.8985 1.5293 4.8217 18 6 1.4356 2.2404 6.0208 19 6 2.3788 1.9406 7.1876 20 9 3.6934 2.2387 6.8130 21 9 2.0195 2.7225 8.2907 22 9 2.2862 0.5862 7.5260 23 6 1.3455 2.1363 3.6031 24 6 1.9129 1.4187 2.3762 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1264 -0.7994 -1.2055 29 1 1.6054 -1.7199 -1.2950 30 1 2.9221 -1.8429 -4.7317 31 1 3.1297 -0.7421 1.2374 32 1 1.6571 -1.7416 1.2616 33 1 3.2160 -0.5220 3.6601 34 1 1.8574 -1.6718 3.7042 35 1 1.9938 -0.3291 5.7984 36 1 0.4793 -0.0177 4.9158 37 1 1.4273 3.3129 5.8268 38 1 0.4284 1.9091 6.2736 39 1 0.2596 2.0412 3.6101 40 1 1.6182 3.1910 3.5660 41 1 2.9963 1.5370 2.3544 42 1 1.4818 1.8483 1.4718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602432035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:52 Heat of formation + Delta-G solvation = -154.168886 kcal Electronic energy + Delta-G solvation = -24572.502788 eV Core-core repulsion = 20558.067433 eV Total energy + Delta-G solvation = -4014.435355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.30127 -47.88499 -47.70552 -39.51424 -36.70382 -34.14832 -32.10762 -31.03061 -29.99969 -27.01731 -26.45313 -24.42212 -23.72546 -22.96463 -22.16698 -20.01162 -18.86249 -18.75095 -18.59491 -17.64020 -16.55019 -15.99989 -15.36924 -15.03220 -14.86202 -14.68911 -14.56254 -14.49179 -14.35586 -14.18668 -14.02676 -13.93317 -13.87035 -13.50051 -12.74722 -12.51569 -12.24663 -12.19281 -11.97864 -11.57090 -11.37933 -11.26966 -10.97609 -10.87912 -10.82657 -10.75128 -10.30459 -10.17649 -9.61885 -9.16827 -8.95366 -8.84581 -8.33443 -8.06043 -5.98354 -3.99605 2.45634 3.22914 3.32159 3.38722 3.41577 3.58283 3.76830 4.09738 4.19036 4.47477 4.64519 4.71236 4.86977 4.99872 5.20348 5.25712 5.32247 5.37587 5.45235 5.65463 5.70249 5.82753 5.88029 6.00089 6.02787 6.13166 6.38390 6.45193 6.51384 6.58997 6.63875 6.98634 7.09776 7.17625 7.33474 7.38746 7.68335 7.83999 8.01608 8.45250 9.06698 9.63802 11.13180 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.040103 B = 0.002772 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.037813 B =10100.249451 C =10290.573386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.537 5.537 15 C 0.057 3.943 16 C 0.042 3.958 17 N -0.535 5.535 18 C 0.009 3.991 19 C 0.457 3.543 20 F -0.172 7.172 21 F -0.187 7.187 22 F -0.184 7.184 23 C 0.062 3.938 24 C 0.052 3.948 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 6.815 22.388 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.262 5.262 15 C -0.072 4.072 16 C -0.086 4.086 17 N -0.260 5.260 18 C -0.121 4.121 19 C 0.402 3.598 20 F -0.154 7.154 21 F -0.169 7.169 22 F -0.165 7.165 23 C -0.065 4.065 24 C -0.077 4.077 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.786 6.677 22.267 23.413 hybrid contribution 0.027 0.352 -0.702 0.785 sum -2.759 7.029 21.565 22.849 Atomic orbital electron populations 1.21589 0.95676 1.00746 0.99958 1.21315 0.96002 0.99069 0.94086 0.92465 1.19112 0.95933 0.95576 0.90356 1.21220 1.34662 1.08243 0.90980 0.92611 1.25022 0.95350 0.95073 0.99099 1.69967 1.39097 1.21160 1.23393 0.86636 0.78903 0.79815 0.82887 1.20760 1.21308 1.19899 1.22304 0.97167 0.98051 0.89036 1.62264 1.59223 1.02309 1.02365 1.22103 0.97539 0.98340 0.89175 1.22590 0.99661 0.86698 0.99613 1.61996 1.59580 1.03511 1.00928 1.23186 0.96061 1.03064 0.89794 1.20564 0.81462 0.73940 0.83790 1.93210 1.38195 1.92812 1.91157 1.93181 1.91752 1.74985 1.56934 1.93115 1.96208 1.33977 1.93218 1.22263 0.97903 0.98288 0.88050 1.22244 0.99118 0.88995 0.97309 0.94018 0.94142 0.92760 0.96928 0.96541 0.93086 0.95254 0.91059 0.94096 0.90141 0.89177 0.93312 0.86439 0.89904 0.93277 0.90018 0.94017 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.75 37.16 0.33 -1.96 16 2 C -0.09 -1.70 1.84 -90.62 -0.17 -1.87 16 3 H 0.06 1.13 6.17 -51.93 -0.32 0.81 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.17 8.41 -34.44 -0.29 -14.45 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.06 1.04 4.57 -3.83 -0.02 1.02 16 14 N -0.54 -7.63 4.12 -234.47 -0.97 -8.60 16 15 C 0.06 0.70 5.62 -3.77 -0.02 0.68 16 16 C 0.04 0.44 5.34 -3.77 -0.02 0.42 16 17 N -0.54 -5.45 4.46 -234.48 -1.05 -6.49 16 18 C 0.01 0.07 5.11 -3.82 -0.02 0.05 16 19 C 0.46 4.19 3.27 37.16 0.12 4.31 16 20 F -0.17 -1.91 17.13 2.25 0.04 -1.87 16 21 F -0.19 -1.70 17.32 2.25 0.04 -1.66 16 22 F -0.18 -1.83 14.68 2.25 0.03 -1.80 16 23 C 0.06 0.64 5.56 -3.77 -0.02 0.62 16 24 C 0.05 0.68 4.98 -3.77 -0.02 0.66 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 27 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.90 5.57 -51.93 -0.29 0.61 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.12 0.70 7.83 -51.93 -0.41 0.29 16 38 H 0.08 0.53 7.98 -51.93 -0.41 0.11 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.71 8.00 -51.93 -0.42 0.29 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 1.34 5.73 -51.93 -0.30 1.04 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -29.78 337.58 -8.07 -37.85 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.62 Total: -4.45 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.35 Total: -8.46 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -1.27 Total: -41.20 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.11 Total: -5.33 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.78 -8.07 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.320 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds