Wall clock time and date at job start Tue Mar 31 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46915 * 2 1 4 4 C 1.53002 * 109.47407 * 239.99784 * 2 1 3 5 5 C 1.50694 * 109.46801 * 64.99758 * 4 2 1 6 6 H 1.07998 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.37886 * 119.99561 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99771 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99770 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.47075 * 90.00272 * 9 7 5 11 11 H 1.48504 * 109.47279 * 209.99841 * 9 7 5 12 12 H 1.48497 * 109.47389 * 330.00376 * 9 7 5 13 13 C 1.52999 * 109.47018 * 119.99479 * 2 1 3 14 14 N 1.46898 * 109.47430 * 298.65708 * 13 2 1 15 15 C 1.46958 * 111.00350 * 184.19099 * 14 13 2 16 16 C 1.53052 * 109.36489 * 183.18693 * 15 14 13 17 17 N 1.46950 * 109.36669 * 301.60008 * 16 15 14 18 18 C 1.46894 * 111.00281 * 183.18945 * 17 16 15 19 19 C 1.53005 * 109.47314 * 76.41825 * 18 17 16 20 20 F 1.39902 * 109.46726 * 53.98845 * 19 18 17 21 21 F 1.39902 * 109.47332 * 173.99129 * 19 18 17 22 22 F 1.39904 * 109.47061 * 293.99111 * 19 18 17 23 23 C 1.46952 * 110.88215 * 59.31638 * 17 16 15 24 24 C 1.46959 * 111.00200 * 307.98872 * 14 13 2 25 25 H 1.08999 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47498 * 300.00080 * 1 2 3 27 27 H 1.08999 * 109.46996 * 60.00206 * 1 2 3 28 28 H 1.09002 * 109.46846 * 184.99870 * 4 2 1 29 29 H 1.09004 * 109.46690 * 304.99964 * 4 2 1 30 30 H 0.97005 * 119.99610 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47286 * 178.65731 * 13 2 1 32 32 H 1.09001 * 109.47493 * 58.65440 * 13 2 1 33 33 H 1.08995 * 109.48731 * 63.21716 * 15 14 13 34 34 H 1.09005 * 109.48587 * 303.15503 * 15 14 13 35 35 H 1.09001 * 109.48684 * 181.63062 * 16 15 14 36 36 H 1.09005 * 109.48937 * 61.56607 * 16 15 14 37 37 H 1.08997 * 109.47714 * 196.42100 * 18 17 16 38 38 H 1.08999 * 109.47270 * 316.42286 * 18 17 16 39 39 H 1.09004 * 109.48613 * 60.65172 * 23 17 16 40 40 H 1.09003 * 109.49196 * 180.71105 * 23 17 16 41 41 H 1.08996 * 109.48852 * 296.78206 * 24 14 13 42 42 H 1.09001 * 109.48280 * 56.83966 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0807 0.9744 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6748 -1.5200 -3.8510 9 14 1.4989 0.5626 -5.2496 10 1 2.5650 1.5414 -5.5825 11 1 1.3111 -0.3713 -6.3889 12 1 0.2283 1.2849 -4.9870 13 6 2.0400 -0.7211 1.2493 14 7 1.5770 -0.0101 2.4485 15 6 2.1302 -0.6171 3.6672 16 6 1.5627 0.1005 4.8941 17 7 1.8985 1.5293 4.8217 18 6 1.4356 2.2404 6.0208 19 6 2.3788 1.9406 7.1876 20 9 3.6934 2.2387 6.8130 21 9 2.0195 2.7225 8.2907 22 9 2.2862 0.5862 7.5260 23 6 1.3455 2.1363 3.6031 24 6 1.9129 1.4187 2.3762 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1264 -0.7994 -1.2055 29 1 1.6054 -1.7199 -1.2950 30 1 2.9221 -1.8429 -4.7317 31 1 3.1297 -0.7421 1.2374 32 1 1.6571 -1.7416 1.2616 33 1 3.2160 -0.5220 3.6601 34 1 1.8574 -1.6718 3.7042 35 1 1.9938 -0.3291 5.7984 36 1 0.4793 -0.0177 4.9158 37 1 1.4273 3.3129 5.8268 38 1 0.4284 1.9091 6.2736 39 1 0.2596 2.0412 3.6101 40 1 1.6182 3.1910 3.5660 41 1 2.9963 1.5370 2.3544 42 1 1.4818 1.8483 1.4718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602432035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:52 Heat of formation + Delta-G solvation = -172.889868 kcal Electronic energy + Delta-G solvation = -24573.314590 eV Core-core repulsion = 20558.067433 eV Total energy + Delta-G solvation = -4015.247158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.02541 -48.59808 -48.46778 -40.50970 -37.94750 -35.70051 -33.97824 -31.95138 -30.97756 -28.84033 -27.69471 -25.85746 -24.70327 -24.14382 -23.38829 -21.06935 -20.28570 -19.48043 -19.40420 -18.54013 -18.35610 -17.13893 -16.52917 -16.15881 -16.10675 -15.84298 -15.62722 -15.50657 -15.29704 -15.08881 -14.92653 -14.74293 -14.67391 -14.62565 -14.33725 -14.02798 -13.49425 -13.20233 -13.12402 -12.97042 -12.80110 -12.74959 -12.51359 -12.25459 -12.19799 -12.08417 -11.80955 -11.76731 -11.35129 -11.03919 -10.82971 -10.52132 -9.60312 -9.24559 -8.16559 -6.25667 1.41195 1.42040 1.53005 1.78020 2.42720 2.50271 2.90787 2.98173 3.11912 3.17180 3.48441 3.83099 3.96992 4.06645 4.17690 4.25774 4.29576 4.42052 4.45055 4.50796 4.52517 4.58997 4.82606 4.87141 4.89796 4.92784 4.96493 5.06187 5.08999 5.29987 5.48217 5.52100 5.55441 5.70975 5.78347 5.82793 5.89442 6.09208 6.19148 6.31957 6.90660 7.42720 8.95645 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.040103 B = 0.002772 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.037813 B =10100.249451 C =10290.573386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 H 0.059 0.941 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.063 0.937 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.073 3.927 14 N -0.533 5.533 15 C 0.055 3.945 16 C 0.049 3.951 17 N -0.550 5.550 18 C 0.014 3.986 19 C 0.456 3.544 20 F -0.187 7.187 21 F -0.186 7.186 22 F -0.190 7.190 23 C 0.071 3.929 24 C 0.049 3.951 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.038 0.962 28 H -0.018 1.018 29 H -0.011 1.011 30 H 0.261 0.739 31 H 0.015 0.985 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.027 0.973 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 8.565 23.418 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.185 1.185 13 C -0.055 4.055 14 N -0.258 5.258 15 C -0.073 4.073 16 C -0.078 4.078 17 N -0.276 5.276 18 C -0.115 4.115 19 C 0.401 3.599 20 F -0.168 7.168 21 F -0.168 7.168 22 F -0.172 7.172 23 C -0.056 4.056 24 C -0.080 4.080 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.001 0.999 29 H 0.008 0.992 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.045 0.955 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.275 8.442 23.321 25.168 hybrid contribution 0.538 -0.217 -0.961 1.123 sum -3.737 8.226 22.360 24.116 Atomic orbital electron populations 1.21465 0.94340 1.00502 1.00476 1.21107 0.96911 0.98549 0.92828 0.92294 1.19005 0.93907 0.94737 0.92830 1.21635 1.34343 1.08537 0.91957 0.91893 1.25965 0.95311 0.96074 1.02710 1.70109 1.40433 1.22971 1.24252 0.85509 0.79070 0.78352 0.78506 1.19975 1.21090 1.18532 1.22021 0.96170 0.97869 0.89433 1.62262 1.58947 1.02839 1.01723 1.22174 0.96879 0.99059 0.89178 1.22498 0.99893 0.87003 0.98413 1.61895 1.60363 1.03427 1.01876 1.23271 0.96232 1.04114 0.87897 1.20837 0.81139 0.73608 0.84327 1.93184 1.39446 1.92895 1.91294 1.93182 1.91653 1.74908 1.57036 1.93101 1.96188 1.34558 1.93329 1.22187 0.98074 0.98798 0.86577 1.22286 0.98392 0.88444 0.98839 0.94620 0.91371 0.94302 0.99934 0.99213 0.92995 0.96634 0.91429 0.95365 0.89581 0.88657 0.92556 0.84220 0.87855 0.92411 0.87950 0.95515 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 8.75 71.98 0.63 -3.41 16 2 C -0.08 -3.00 1.84 -10.79 -0.02 -3.02 16 3 H 0.06 2.33 6.17 -2.38 -0.01 2.32 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.50 8.41 25.60 0.22 -29.28 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -57.42 13.29 21.45 0.28 -57.14 16 9 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 C 0.07 2.50 4.57 86.30 0.39 2.89 16 14 N -0.53 -14.59 4.12 -895.72 -3.69 -18.28 16 15 C 0.06 1.31 5.62 86.31 0.48 1.79 16 16 C 0.05 0.93 5.34 86.31 0.46 1.39 16 17 N -0.55 -9.73 4.46 -895.75 -3.99 -13.72 16 18 C 0.01 0.17 5.11 86.31 0.44 0.62 16 19 C 0.46 7.35 3.27 71.98 0.24 7.58 16 20 F -0.19 -3.87 17.13 44.97 0.77 -3.10 16 21 F -0.19 -2.98 17.32 44.97 0.78 -2.20 16 22 F -0.19 -3.44 14.68 44.97 0.66 -2.78 16 23 C 0.07 1.24 5.56 86.31 0.48 1.72 16 24 C 0.05 1.21 4.98 86.31 0.43 1.64 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 2.10 7.36 -2.39 -0.02 2.09 16 27 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 28 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 30 H 0.26 15.10 8.31 -92.70 -0.77 14.32 16 31 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.10 1.72 5.57 -2.39 -0.01 1.70 16 36 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.14 1.09 7.83 -2.39 -0.02 1.07 16 38 H 0.10 0.89 7.98 -2.39 -0.02 0.87 16 39 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.10 1.41 8.00 -2.39 -0.02 1.39 16 41 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 2.31 5.73 -2.39 -0.01 2.30 16 Total: -1.00 -64.90 337.58 2.19 -62.71 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.00 Total: 4.23 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 4.35 Total: -15.96 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -7.40 Total: -89.14 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.21 Total: -8.08 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.90 2.19 -62.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.182 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds