Wall clock time and date at job start Tue Mar 31 2020 07:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.47103 * 2 1 4 4 C 1.52997 * 109.46771 * 239.99815 * 2 1 3 5 5 C 1.50703 * 109.47206 * 65.00334 * 4 2 1 6 6 H 1.08002 * 120.00016 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00283 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00183 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00278 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46891 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46903 * 119.99765 * 9 7 5 12 12 H 1.48502 * 109.47247 * 239.99972 * 9 7 5 13 13 C 1.52997 * 109.47129 * 119.99979 * 2 1 3 14 14 N 1.46903 * 109.47062 * 294.99967 * 13 2 1 15 15 C 1.46907 * 110.99617 * 180.02562 * 14 13 2 16 16 H 1.08994 * 110.62916 * 31.89272 * 15 14 13 17 17 C 1.55138 * 110.85516 * 268.68530 * 15 14 13 18 18 C 1.54910 * 101.65178 * 205.89637 * 17 15 14 19 19 N 1.47849 * 104.79558 * 37.07276 * 18 17 15 20 20 C 1.46899 * 110.99671 * 213.63666 * 19 18 17 21 21 C 1.52997 * 109.47254 * 290.83993 * 20 19 18 22 22 F 1.39905 * 109.47157 * 59.99979 * 21 20 19 23 23 F 1.39900 * 109.47010 * 300.00370 * 21 20 19 24 24 F 1.39897 * 109.47422 * 180.02562 * 21 20 19 25 25 C 1.47440 * 108.56495 * 335.90203 * 19 18 17 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46779 * 299.99824 * 1 2 3 28 28 H 1.08991 * 109.46844 * 60.00021 * 1 2 3 29 29 H 1.09007 * 109.46908 * 184.99786 * 4 2 1 30 30 H 1.09001 * 109.47610 * 305.00367 * 4 2 1 31 31 H 0.96993 * 120.00034 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47252 * 174.99850 * 13 2 1 33 33 H 1.09002 * 109.47260 * 54.99687 * 13 2 1 34 34 H 1.00891 * 110.99647 * 303.95233 * 14 13 2 35 35 H 1.09008 * 110.99265 * 323.98683 * 17 15 14 36 36 H 1.08994 * 110.99414 * 87.76719 * 17 15 14 37 37 H 1.08988 * 110.37224 * 278.24000 * 18 17 15 38 38 H 1.09004 * 110.36947 * 155.89653 * 18 17 15 39 39 H 1.09002 * 109.47043 * 170.83922 * 20 19 18 40 40 H 1.09001 * 109.46901 * 50.84143 * 20 19 18 41 41 H 1.09002 * 109.89082 * 120.39781 * 25 19 18 42 42 H 1.09001 * 109.88981 * 241.59012 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6772 -1.5183 -3.8512 9 14 1.4984 0.5627 -5.2497 10 1 0.7412 1.7738 -4.8435 11 1 2.7163 0.9683 -5.9964 12 1 0.6450 -0.2870 -6.1186 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0375 2.4456 15 6 2.1259 -0.6265 3.6672 16 1 3.0631 -1.1506 3.4801 17 6 1.0526 -1.6018 4.2181 18 6 1.4107 -1.6425 5.7247 19 7 1.8283 -0.2623 6.0509 20 6 2.8828 -0.2593 7.0737 21 6 2.2972 -0.7157 8.4114 22 9 1.7811 -2.0092 8.2775 23 9 1.2734 0.1574 8.7945 24 9 3.3012 -0.7123 9.3856 25 6 2.2904 0.3932 4.8137 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.1264 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.9243 -1.8412 -4.7317 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 1.9883 0.9873 2.3966 35 1 0.0490 -1.2045 4.0659 36 1 1.1524 -2.5884 3.7657 37 1 2.2305 -2.3388 5.9011 38 1 0.5385 -1.9245 6.3145 39 1 3.2849 0.7485 7.1780 40 1 3.6804 -0.9396 6.7752 41 1 1.6844 1.2769 4.6137 42 1 3.3389 0.6743 4.9123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602534977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:14 Heat of formation + Delta-G solvation = -164.083918 kcal Electronic energy + Delta-G solvation = -23887.696003 eV Core-core repulsion = 19872.830700 eV Total energy + Delta-G solvation = -4014.865303 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.35408 -47.92032 -47.77857 -39.54436 -36.62783 -34.18371 -32.37047 -31.15599 -29.06971 -27.59718 -26.64243 -24.79286 -23.50989 -22.49437 -21.45957 -20.72796 -19.06892 -18.82500 -18.70765 -17.87025 -16.39581 -16.01924 -15.83874 -15.02719 -14.98188 -14.71526 -14.52588 -14.44683 -14.27544 -14.01032 -13.97679 -13.95789 -13.80335 -13.34309 -13.04593 -12.61968 -12.29370 -12.17551 -11.88003 -11.61933 -11.47702 -11.42380 -11.20110 -10.97244 -10.86310 -10.71616 -10.30431 -10.23021 -9.73340 -9.18281 -8.99394 -8.88597 -8.35075 -8.23709 -5.99639 -4.00752 2.38778 3.17067 3.30770 3.38525 3.42548 3.49814 3.70604 4.06098 4.22563 4.35679 4.47576 4.55670 4.68203 4.81908 4.95274 5.02433 5.21320 5.36310 5.40599 5.62962 5.64590 5.68805 5.81742 5.85279 6.10237 6.13056 6.35504 6.38914 6.41166 6.51830 6.66311 6.98499 7.15423 7.17612 7.30368 7.55410 7.67210 7.82539 8.00545 8.44440 9.05939 9.62926 11.11959 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.050606 B = 0.002304 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.157183 B =12148.087289 C =12200.305488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.064 3.936 14 N -0.674 5.674 15 C 0.065 3.935 16 H 0.051 0.949 17 C -0.116 4.116 18 C 0.033 3.967 19 N -0.520 5.520 20 C 0.003 3.997 21 C 0.458 3.542 22 F -0.183 7.183 23 F -0.173 7.173 24 F -0.186 7.186 25 C 0.044 3.956 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.339 0.661 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 1.371 24.501 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.305 5.305 15 C -0.047 4.047 16 H 0.069 0.931 17 C -0.155 4.155 18 C -0.094 4.094 19 N -0.244 5.244 20 C -0.128 4.128 21 C 0.403 3.597 22 F -0.164 7.164 23 F -0.155 7.155 24 F -0.168 7.168 25 C -0.083 4.083 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.047 1.249 24.637 24.669 hybrid contribution 1.465 0.043 -1.044 1.800 sum 1.418 1.292 23.593 23.671 Atomic orbital electron populations 1.21587 0.95628 1.00579 1.00203 1.21200 0.96080 0.98874 0.93943 0.92818 1.19128 0.95856 0.95605 0.90491 1.21272 1.34463 1.08295 0.90957 0.92490 1.25029 0.95339 0.95107 0.99141 1.69976 1.39169 1.21301 1.23284 0.86572 0.78248 0.80142 0.83269 1.19728 1.21127 1.21065 1.22213 0.97032 0.97802 0.89358 1.60591 1.63498 1.05548 1.00877 1.22742 0.96436 0.94951 0.90554 0.93111 1.22762 1.00664 0.99507 0.92571 1.23358 1.00922 0.87757 0.97356 1.63515 1.33942 1.17901 1.09073 1.23466 0.94623 1.05272 0.89394 1.20437 0.76423 0.75304 0.87504 1.93183 1.87648 1.39711 1.95901 1.93209 1.60797 1.69073 1.92405 1.93186 1.61030 1.96356 1.66201 1.23028 0.99654 0.98359 0.87255 0.94187 0.93880 0.92769 0.96997 0.96565 0.93150 0.95783 0.91505 0.84231 0.89245 0.90746 0.92973 0.89311 0.86306 0.90068 0.88558 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.89 37.16 0.33 -1.99 16 2 C -0.08 -1.61 2.48 -90.62 -0.22 -1.84 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.06 1.05 4.94 -3.82 -0.02 1.03 16 14 N -0.67 -8.78 5.80 -104.80 -0.61 -9.39 16 15 C 0.06 0.70 3.27 -65.89 -0.22 0.48 16 16 H 0.05 0.57 7.82 -51.93 -0.41 0.17 16 17 C -0.12 -1.23 6.77 -24.59 -0.17 -1.39 16 18 C 0.03 0.31 5.08 -2.29 -0.01 0.30 16 19 N -0.52 -4.70 5.09 -231.25 -1.18 -5.87 16 20 C 0.00 0.02 4.69 -3.83 -0.02 0.00 16 21 C 0.46 3.93 3.26 37.16 0.12 4.05 16 22 F -0.18 -1.74 14.70 2.25 0.03 -1.70 16 23 F -0.17 -1.76 17.24 2.25 0.04 -1.72 16 24 F -0.19 -1.62 17.32 2.25 0.04 -1.58 16 25 C 0.04 0.40 6.37 -2.84 -0.02 0.38 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 28 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 29 H 0.01 0.32 8.14 -51.92 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.34 4.12 8.32 -39.30 -0.33 3.79 16 35 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.45 7.36 -51.94 -0.38 0.06 16 38 H 0.09 0.84 7.52 -51.93 -0.39 0.45 16 39 H 0.12 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.08 0.48 7.85 -51.93 -0.41 0.08 16 41 H 0.10 0.90 7.90 -51.93 -0.41 0.49 16 42 H 0.06 0.43 7.55 -51.93 -0.39 0.04 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -29.69 345.84 -8.26 -37.95 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.78 Total: -1.88 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.73 Total: -11.45 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -1.05 Total: -41.36 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.69 -8.26 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602534977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.138 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds