Wall clock time and date at job start Tue Mar 31 2020 07:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.47103 * 2 1 4 4 C 1.52997 * 109.46771 * 239.99815 * 2 1 3 5 5 C 1.50703 * 109.47206 * 65.00334 * 4 2 1 6 6 H 1.08002 * 120.00016 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00283 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00183 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00278 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46891 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46903 * 119.99765 * 9 7 5 12 12 H 1.48502 * 109.47247 * 239.99972 * 9 7 5 13 13 C 1.52997 * 109.47129 * 119.99979 * 2 1 3 14 14 N 1.46903 * 109.47062 * 294.99967 * 13 2 1 15 15 C 1.46907 * 110.99617 * 180.02562 * 14 13 2 16 16 H 1.08994 * 110.62916 * 31.89272 * 15 14 13 17 17 C 1.55138 * 110.85516 * 268.68530 * 15 14 13 18 18 C 1.54910 * 101.65178 * 205.89637 * 17 15 14 19 19 N 1.47849 * 104.79558 * 37.07276 * 18 17 15 20 20 C 1.46899 * 110.99671 * 213.63666 * 19 18 17 21 21 C 1.52997 * 109.47254 * 290.83993 * 20 19 18 22 22 F 1.39905 * 109.47157 * 59.99979 * 21 20 19 23 23 F 1.39900 * 109.47010 * 300.00370 * 21 20 19 24 24 F 1.39897 * 109.47422 * 180.02562 * 21 20 19 25 25 C 1.47440 * 108.56495 * 335.90203 * 19 18 17 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46779 * 299.99824 * 1 2 3 28 28 H 1.08991 * 109.46844 * 60.00021 * 1 2 3 29 29 H 1.09007 * 109.46908 * 184.99786 * 4 2 1 30 30 H 1.09001 * 109.47610 * 305.00367 * 4 2 1 31 31 H 0.96993 * 120.00034 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47252 * 174.99850 * 13 2 1 33 33 H 1.09002 * 109.47260 * 54.99687 * 13 2 1 34 34 H 1.00891 * 110.99647 * 303.95233 * 14 13 2 35 35 H 1.09008 * 110.99265 * 323.98683 * 17 15 14 36 36 H 1.08994 * 110.99414 * 87.76719 * 17 15 14 37 37 H 1.08988 * 110.37224 * 278.24000 * 18 17 15 38 38 H 1.09004 * 110.36947 * 155.89653 * 18 17 15 39 39 H 1.09002 * 109.47043 * 170.83922 * 20 19 18 40 40 H 1.09001 * 109.46901 * 50.84143 * 20 19 18 41 41 H 1.09002 * 109.89082 * 120.39781 * 25 19 18 42 42 H 1.09001 * 109.88981 * 241.59012 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6772 -1.5183 -3.8512 9 14 1.4984 0.5627 -5.2497 10 1 0.7412 1.7738 -4.8435 11 1 2.7163 0.9683 -5.9964 12 1 0.6450 -0.2870 -6.1186 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0375 2.4456 15 6 2.1259 -0.6265 3.6672 16 1 3.0631 -1.1506 3.4801 17 6 1.0526 -1.6018 4.2181 18 6 1.4107 -1.6425 5.7247 19 7 1.8283 -0.2623 6.0509 20 6 2.8828 -0.2593 7.0737 21 6 2.2972 -0.7157 8.4114 22 9 1.7811 -2.0092 8.2775 23 9 1.2734 0.1574 8.7945 24 9 3.3012 -0.7123 9.3856 25 6 2.2904 0.3932 4.8137 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.1264 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.9243 -1.8412 -4.7317 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 1.9883 0.9873 2.3966 35 1 0.0490 -1.2045 4.0659 36 1 1.1524 -2.5884 3.7657 37 1 2.2305 -2.3388 5.9011 38 1 0.5385 -1.9245 6.3145 39 1 3.2849 0.7485 7.1780 40 1 3.6804 -0.9396 6.7752 41 1 1.6844 1.2769 4.6137 42 1 3.3389 0.6743 4.9123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602534977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:14 Heat of formation + Delta-G solvation = -183.274407 kcal Electronic energy + Delta-G solvation = -23888.528165 eV Core-core repulsion = 19872.830700 eV Total energy + Delta-G solvation = -4015.697465 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.03888 -48.59947 -48.49298 -40.32988 -37.99675 -35.60264 -34.08315 -32.24215 -29.87439 -28.96569 -28.09137 -26.28810 -24.23191 -24.17324 -22.21856 -21.62317 -20.64171 -19.50929 -19.39603 -18.59839 -18.43304 -16.93548 -16.69198 -16.44677 -16.09884 -15.79381 -15.51856 -15.36473 -15.00166 -14.97060 -14.90331 -14.71899 -14.63881 -14.58939 -14.25461 -13.86649 -13.64327 -13.34928 -13.11921 -12.88075 -12.79820 -12.65457 -12.60074 -12.22789 -12.19413 -12.07825 -11.87427 -11.74999 -11.45564 -11.06714 -10.88329 -10.53517 -9.57463 -9.33282 -8.17346 -6.26087 1.40130 1.41036 1.53739 1.75551 2.42261 2.50727 2.87910 3.09444 3.16398 3.21645 3.38854 3.62303 3.80898 4.06249 4.17636 4.21436 4.28958 4.31767 4.36030 4.43289 4.55554 4.64188 4.84446 4.90301 4.93297 4.99116 5.03005 5.05738 5.25465 5.31689 5.48799 5.53163 5.58049 5.68090 5.73256 5.82879 5.90288 6.10960 6.32431 6.52496 6.90591 7.42394 8.94925 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.050606 B = 0.002304 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.157183 B =12148.087289 C =12200.305488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 H 0.056 0.944 4 C 0.031 3.969 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.080 3.920 14 N -0.672 5.672 15 C 0.063 3.937 16 H 0.051 0.949 17 C -0.116 4.116 18 C 0.040 3.960 19 N -0.531 5.531 20 C 0.005 3.995 21 C 0.456 3.544 22 F -0.190 7.190 23 F -0.185 7.185 24 F -0.187 7.187 25 C 0.052 3.948 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.036 0.964 29 H -0.014 1.014 30 H -0.012 1.012 31 H 0.261 0.739 32 H 0.019 0.981 33 H 0.058 0.942 34 H 0.347 0.653 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 2.692 25.341 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.207 1.207 13 C -0.049 4.049 14 N -0.304 5.304 15 C -0.047 4.047 16 H 0.069 0.931 17 C -0.155 4.155 18 C -0.088 4.088 19 N -0.256 5.256 20 C -0.125 4.125 21 C 0.402 3.598 22 F -0.172 7.172 23 F -0.166 7.166 24 F -0.169 7.169 25 C -0.075 4.075 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.005 0.995 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.167 0.833 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.157 0.843 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.017 2.585 25.500 25.631 hybrid contribution 1.446 -0.400 -1.244 1.949 sum 1.464 2.185 24.256 24.399 Atomic orbital electron populations 1.21483 0.94793 1.00241 1.00500 1.21007 0.96609 0.98507 0.93099 0.92544 1.19027 0.94101 0.94656 0.92847 1.21680 1.34135 1.08538 0.92066 0.92059 1.25951 0.95333 0.96110 1.02669 1.70106 1.40444 1.23016 1.24185 0.85469 0.78054 0.78921 0.79049 1.18525 1.20558 1.20661 1.21860 0.96431 0.97265 0.89346 1.60480 1.63677 1.05788 1.00412 1.22780 0.96314 0.95550 0.90106 0.93116 1.22715 0.99888 0.99188 0.93710 1.23269 1.01110 0.88312 0.96064 1.63458 1.35102 1.17607 1.09426 1.23568 0.94222 1.06944 0.87731 1.20695 0.76115 0.74846 0.88159 1.93169 1.87805 1.40273 1.95943 1.93186 1.61434 1.69407 1.92606 1.93183 1.60930 1.96330 1.66409 1.22943 1.00954 0.97390 0.86188 0.94846 0.91349 0.94524 0.99526 0.99329 0.92985 0.96245 0.92317 0.83324 0.90576 0.91148 0.92111 0.89805 0.84257 0.88384 0.88771 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.19 8.89 71.99 0.64 -3.55 16 2 C -0.07 -2.87 2.48 -10.79 -0.03 -2.90 16 3 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.03 1.62 4.45 29.85 0.13 1.75 16 5 C -0.53 -29.43 8.41 25.60 0.22 -29.22 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16 9 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.08 2.56 4.94 86.30 0.43 2.99 16 14 N -0.67 -16.41 5.80 -485.48 -2.82 -19.23 16 15 C 0.06 1.25 3.27 46.09 0.15 1.40 16 16 H 0.05 1.04 7.82 -2.39 -0.02 1.02 16 17 C -0.12 -2.32 6.77 31.98 0.22 -2.11 16 18 C 0.04 0.67 5.08 86.77 0.44 1.11 16 19 N -0.53 -8.35 5.09 -885.54 -4.50 -12.85 16 20 C 0.01 0.06 4.69 86.30 0.40 0.46 16 21 C 0.46 7.02 3.26 71.98 0.23 7.26 16 22 F -0.19 -3.36 14.70 44.97 0.66 -2.70 16 23 F -0.18 -3.51 17.24 44.97 0.78 -2.73 16 24 F -0.19 -2.93 17.32 44.97 0.78 -2.15 16 25 C 0.05 0.79 6.37 86.65 0.55 1.34 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 2.18 7.75 -2.39 -0.02 2.17 16 28 H 0.04 1.46 6.95 -2.39 -0.02 1.45 16 29 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16 32 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.35 7.66 8.32 -89.70 -0.75 6.91 16 35 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 0.92 7.36 -2.39 -0.02 0.90 16 38 H 0.08 1.50 7.52 -2.38 -0.02 1.48 16 39 H 0.14 1.04 8.03 -2.39 -0.02 1.02 16 40 H 0.10 0.84 7.85 -2.39 -0.02 0.82 16 41 H 0.09 1.50 7.90 -2.39 -0.02 1.48 16 42 H 0.08 0.89 7.55 -2.39 -0.02 0.87 16 Total: -1.00 -64.02 345.84 1.32 -62.70 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.26 Total: 8.62 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 3.85 Total: -21.20 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -7.04 Total: -88.81 kcal Atomic # 9 Polarization: -9.79 SS G_CDS: 2.21 Total: -7.58 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.02 1.32 -62.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602534977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.574 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds