Wall clock time and date at job start Tue Mar 31 2020 07:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.52995 * 109.47523 * 240.00122 * 2 1 3 14 14 N 1.46901 * 109.47205 * 65.00112 * 13 2 1 15 15 C 1.46898 * 111.00309 * 180.02562 * 14 13 2 16 16 H 1.09008 * 110.62276 * 325.69949 * 15 14 13 17 17 C 1.55136 * 110.70966 * 88.79918 * 15 14 13 18 18 C 1.55116 * 101.55651 * 153.91037 * 17 15 14 19 19 N 1.47842 * 104.90693 * 323.15701 * 18 17 15 20 20 C 1.46901 * 111.00166 * 146.23982 * 19 18 17 21 21 C 1.53007 * 109.46722 * 49.16392 * 20 19 18 22 22 F 1.39897 * 109.47159 * 59.99715 * 21 20 19 23 23 F 1.39898 * 109.46859 * 180.02562 * 21 20 19 24 24 F 1.39896 * 109.46637 * 299.99571 * 21 20 19 25 25 C 1.47447 * 108.56486 * 23.97468 * 19 18 17 26 26 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 29 29 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 30 30 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47460 * 184.99827 * 13 2 1 33 33 H 1.09001 * 109.46993 * 305.00025 * 13 2 1 34 34 H 1.00900 * 111.00028 * 56.04239 * 14 13 2 35 35 H 1.09000 * 110.99267 * 272.12919 * 17 15 14 36 36 H 1.08999 * 110.99056 * 35.94612 * 17 15 14 37 37 H 1.09001 * 110.42219 * 204.24746 * 18 17 15 38 38 H 1.08994 * 110.31513 * 82.02326 * 18 17 15 39 39 H 1.08997 * 109.47324 * 169.15927 * 20 19 18 40 40 H 1.08992 * 109.47320 * 289.16390 * 20 19 18 41 41 H 1.08997 * 109.88742 * 239.60096 * 25 19 18 42 42 H 1.09008 * 110.02356 * 118.49006 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.0302 0.6771 5.3142 11 1 2.0091 -0.1278 6.4612 12 1 2.1024 1.9297 5.1806 13 6 2.0400 -0.7212 -1.2492 14 7 1.6515 0.0375 -2.4456 15 6 2.1249 -0.6270 -3.6672 16 1 3.0830 -1.1161 -3.4915 17 6 1.0741 -1.6469 -4.1793 18 6 1.3994 -1.6936 -5.6953 19 7 1.7655 -0.3054 -6.0486 20 6 2.7975 -0.2829 -7.0938 21 6 2.3832 -1.2085 -8.2395 22 9 1.1670 -0.7717 -8.7754 23 9 3.3663 -1.1875 -9.2346 24 9 2.2380 -2.5131 -7.7556 25 6 2.2323 0.3815 -4.8302 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7995 1.2056 30 1 1.6053 -1.7198 1.2951 31 1 2.9317 -1.8367 4.7312 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7197 -1.2951 34 1 1.9882 0.9874 -2.3966 35 1 1.2190 -2.6228 -3.7159 36 1 0.0610 -1.2824 -4.0096 37 1 0.5245 -2.0112 -6.2624 38 1 2.2366 -2.3661 -5.8821 39 1 2.9107 0.7336 -7.4707 40 1 3.7450 -0.6232 -6.6762 41 1 1.6026 1.2482 -4.6289 42 1 3.2685 0.6968 -4.9533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602534979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:19 Heat of formation + Delta-G solvation = -155.699450 kcal Electronic energy + Delta-G solvation = -24001.437535 eV Core-core repulsion = 19986.935810 eV Total energy + Delta-G solvation = -4014.501725 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.48436 -48.05808 -47.85985 -39.50139 -36.61816 -34.18014 -32.36132 -31.13256 -29.08164 -27.57456 -26.63354 -24.78744 -23.59660 -22.50384 -21.53253 -20.71100 -19.05454 -18.91336 -18.76928 -17.70176 -16.40821 -16.03286 -15.98458 -15.29461 -14.92148 -14.73125 -14.52495 -14.44265 -14.35434 -14.14883 -14.04920 -13.96840 -13.66210 -13.32632 -12.98645 -12.62516 -12.26486 -12.15541 -11.88835 -11.61286 -11.46604 -11.27366 -11.18701 -10.90802 -10.85183 -10.71270 -10.30097 -10.24420 -9.72253 -9.17232 -8.99991 -8.84010 -8.33897 -8.22774 -5.98751 -4.00063 2.34067 3.15245 3.33640 3.38099 3.40519 3.40766 3.66334 4.00719 4.22647 4.37139 4.48104 4.61299 4.64006 4.84274 4.96274 5.08297 5.22572 5.36980 5.44252 5.63391 5.66834 5.69855 5.83448 5.86242 6.11424 6.14274 6.36271 6.39921 6.42516 6.52598 6.66941 6.99206 7.16059 7.18173 7.31275 7.56404 7.67547 7.83264 8.01198 8.45058 9.06150 9.63428 11.12776 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.049830 B = 0.002350 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.780992 B =11914.121921 C =11997.761275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.674 5.674 15 C 0.064 3.936 16 H 0.049 0.951 17 C -0.116 4.116 18 C 0.018 3.982 19 N -0.517 5.517 20 C 0.003 3.997 21 C 0.455 3.545 22 F -0.173 7.173 23 F -0.184 7.184 24 F -0.180 7.180 25 C 0.044 3.956 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.339 0.661 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 1.302 -24.654 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.305 5.305 15 C -0.047 4.047 16 H 0.067 0.933 17 C -0.155 4.155 18 C -0.109 4.109 19 N -0.242 5.242 20 C -0.127 4.127 21 C 0.400 3.600 22 F -0.154 7.154 23 F -0.166 7.166 24 F -0.162 7.162 25 C -0.083 4.083 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.122 1.142 -24.782 24.809 hybrid contribution 1.495 0.041 1.072 1.840 sum 1.374 1.183 -23.710 23.780 Atomic orbital electron populations 1.21585 0.95629 1.00585 1.00185 1.21200 0.96076 0.98869 0.93956 0.92833 1.19116 0.95836 0.95589 0.90450 1.21197 1.34612 1.08355 0.91004 0.92601 1.25020 0.95314 0.95104 0.99109 1.69951 1.38983 1.21278 1.23521 0.86687 0.78919 0.80099 0.82462 1.20233 1.21379 1.20316 1.22206 0.97032 0.97815 0.89346 1.60586 1.63528 1.05529 1.00898 1.22743 0.96514 0.94896 0.90531 0.93262 1.22799 1.00788 0.99109 0.92813 1.23730 1.01629 0.88345 0.97176 1.63756 1.35741 1.16221 1.08528 1.23531 0.96241 1.00919 0.91962 1.20473 0.75238 0.80269 0.83989 1.93217 1.45518 1.89211 1.87456 1.93195 1.62548 1.96514 1.64336 1.93160 1.95635 1.40307 1.87067 1.23031 0.99705 0.98034 0.87546 0.94186 0.92778 0.93888 0.97012 0.96580 0.93029 0.95797 0.91495 0.84274 0.90756 0.89354 0.89523 0.91541 0.86126 0.90127 0.88539 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.15 0.33 -2.00 16 2 C -0.08 -1.62 2.48 -90.62 -0.22 -1.85 16 3 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.06 4.94 -3.83 -0.02 1.04 16 14 N -0.67 -8.89 5.77 -104.81 -0.61 -9.50 16 15 C 0.06 0.71 3.24 -65.90 -0.21 0.50 16 16 H 0.05 0.57 7.86 -51.92 -0.41 0.16 16 17 C -0.12 -1.27 6.77 -24.48 -0.17 -1.43 16 18 C 0.02 0.18 4.87 -2.19 -0.01 0.17 16 19 N -0.52 -4.72 5.24 -231.11 -1.21 -5.93 16 20 C 0.00 0.02 4.99 -3.82 -0.02 0.00 16 21 C 0.45 3.82 3.05 37.16 0.11 3.94 16 22 F -0.17 -1.70 17.24 2.25 0.04 -1.67 16 23 F -0.18 -1.58 17.32 2.25 0.04 -1.54 16 24 F -0.18 -1.67 13.38 2.25 0.03 -1.64 16 25 C 0.04 0.40 6.38 -2.84 -0.02 0.38 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.11 6.95 -51.93 -0.36 0.74 16 28 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.34 4.15 8.38 -39.29 -0.33 3.83 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 38 H 0.07 0.61 5.98 -51.93 -0.31 0.30 16 39 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.48 7.96 -51.93 -0.41 0.07 16 41 H 0.10 0.91 7.94 -51.93 -0.41 0.50 16 42 H 0.06 0.44 7.50 -51.92 -0.39 0.05 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -29.64 343.80 -8.29 -37.93 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.74 Total: -1.49 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.74 Total: -11.76 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -1.08 Total: -41.59 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.11 Total: -4.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.64 -8.29 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602534979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.772 kcal (2) G-P(sol) polarization free energy of solvation -29.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds