Wall clock time and date at job start Tue Mar 31 2020 07:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.52995 * 109.47523 * 240.00122 * 2 1 3 14 14 N 1.46901 * 109.47205 * 65.00112 * 13 2 1 15 15 C 1.46898 * 111.00309 * 180.02562 * 14 13 2 16 16 H 1.09008 * 110.62276 * 325.69949 * 15 14 13 17 17 C 1.55136 * 110.70966 * 88.79918 * 15 14 13 18 18 C 1.55116 * 101.55651 * 153.91037 * 17 15 14 19 19 N 1.47842 * 104.90693 * 323.15701 * 18 17 15 20 20 C 1.46901 * 111.00166 * 146.23982 * 19 18 17 21 21 C 1.53007 * 109.46722 * 49.16392 * 20 19 18 22 22 F 1.39897 * 109.47159 * 59.99715 * 21 20 19 23 23 F 1.39898 * 109.46859 * 180.02562 * 21 20 19 24 24 F 1.39896 * 109.46637 * 299.99571 * 21 20 19 25 25 C 1.47447 * 108.56486 * 23.97468 * 19 18 17 26 26 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 29 29 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 30 30 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47460 * 184.99827 * 13 2 1 33 33 H 1.09001 * 109.46993 * 305.00025 * 13 2 1 34 34 H 1.00900 * 111.00028 * 56.04239 * 14 13 2 35 35 H 1.09000 * 110.99267 * 272.12919 * 17 15 14 36 36 H 1.08999 * 110.99056 * 35.94612 * 17 15 14 37 37 H 1.09001 * 110.42219 * 204.24746 * 18 17 15 38 38 H 1.08994 * 110.31513 * 82.02326 * 18 17 15 39 39 H 1.08997 * 109.47324 * 169.15927 * 20 19 18 40 40 H 1.08992 * 109.47320 * 289.16390 * 20 19 18 41 41 H 1.08997 * 109.88742 * 239.60096 * 25 19 18 42 42 H 1.09008 * 110.02356 * 118.49006 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.0302 0.6771 5.3142 11 1 2.0091 -0.1278 6.4612 12 1 2.1024 1.9297 5.1806 13 6 2.0400 -0.7212 -1.2492 14 7 1.6515 0.0375 -2.4456 15 6 2.1249 -0.6270 -3.6672 16 1 3.0830 -1.1161 -3.4915 17 6 1.0741 -1.6469 -4.1793 18 6 1.3994 -1.6936 -5.6953 19 7 1.7655 -0.3054 -6.0486 20 6 2.7975 -0.2829 -7.0938 21 6 2.3832 -1.2085 -8.2395 22 9 1.1670 -0.7717 -8.7754 23 9 3.3663 -1.1875 -9.2346 24 9 2.2380 -2.5131 -7.7556 25 6 2.2323 0.3815 -4.8302 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7995 1.2056 30 1 1.6053 -1.7198 1.2951 31 1 2.9317 -1.8367 4.7312 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7197 -1.2951 34 1 1.9882 0.9874 -2.3966 35 1 1.2190 -2.6228 -3.7159 36 1 0.0610 -1.2824 -4.0096 37 1 0.5245 -2.0112 -6.2624 38 1 2.2366 -2.3661 -5.8821 39 1 2.9107 0.7336 -7.4707 40 1 3.7450 -0.6232 -6.6762 41 1 1.6026 1.2482 -4.6289 42 1 3.2685 0.6968 -4.9533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602534979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:19 Heat of formation + Delta-G solvation = -175.002684 kcal Electronic energy + Delta-G solvation = -24002.274586 eV Core-core repulsion = 19986.935810 eV Total energy + Delta-G solvation = -4015.338776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.15742 -48.73034 -48.55422 -40.30585 -37.99648 -35.60778 -34.08652 -32.23003 -29.89936 -28.96291 -28.08168 -26.29016 -24.26924 -24.23156 -22.31992 -21.62643 -20.64105 -19.58622 -19.44597 -18.52290 -18.33574 -17.00030 -16.76849 -16.46705 -16.25116 -15.83333 -15.56231 -15.41155 -15.08130 -15.00420 -14.92563 -14.82295 -14.69650 -14.41246 -14.23066 -13.88054 -13.62904 -13.34258 -13.12220 -12.86875 -12.76008 -12.65192 -12.61952 -12.19887 -12.14553 -12.08640 -11.83483 -11.74117 -11.45439 -11.07254 -10.89569 -10.52349 -9.53449 -9.34004 -8.16945 -6.26025 1.40842 1.43428 1.51018 1.71693 2.42418 2.48592 2.78823 3.05036 3.16560 3.20284 3.35013 3.60717 3.80970 4.05642 4.16327 4.21445 4.31922 4.32716 4.37068 4.42600 4.55210 4.65419 4.83818 4.90352 4.92658 4.97302 5.02929 5.05279 5.24422 5.31336 5.48423 5.52907 5.57637 5.65977 5.73749 5.82634 5.90042 6.10235 6.32236 6.52406 6.90240 7.42373 8.94939 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.049830 B = 0.002350 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.780992 B =11914.121921 C =11997.761275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.080 3.920 14 N -0.671 5.671 15 C 0.063 3.937 16 H 0.049 0.951 17 C -0.117 4.117 18 C 0.026 3.974 19 N -0.527 5.527 20 C 0.005 3.995 21 C 0.454 3.546 22 F -0.183 7.183 23 F -0.185 7.185 24 F -0.187 7.187 25 C 0.052 3.948 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.068 0.932 29 H -0.014 1.014 30 H -0.012 1.012 31 H 0.262 0.738 32 H 0.019 0.981 33 H 0.058 0.942 34 H 0.348 0.652 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 2.837 -25.556 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.049 4.049 14 N -0.303 5.303 15 C -0.048 4.048 16 H 0.067 0.933 17 C -0.156 4.156 18 C -0.102 4.102 19 N -0.253 5.253 20 C -0.124 4.124 21 C 0.399 3.601 22 F -0.165 7.165 23 F -0.167 7.167 24 F -0.169 7.169 25 C -0.075 4.075 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.004 0.996 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.159 0.841 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.134 2.694 -25.708 25.849 hybrid contribution 1.504 -0.474 1.290 2.038 sum 1.370 2.220 -24.418 24.557 Atomic orbital electron populations 1.21480 0.94771 1.00227 1.00521 1.21006 0.96623 0.98514 0.93070 0.92508 1.19016 0.94062 0.94636 0.92838 1.21625 1.34312 1.08657 0.92095 0.92021 1.25951 0.95276 0.96115 1.02667 1.70091 1.40284 1.23022 1.24335 0.85574 0.78920 0.78830 0.78183 1.19287 1.21133 1.19140 1.21854 0.96405 0.97276 0.89381 1.60475 1.63677 1.05780 1.00392 1.22784 0.96292 0.95495 0.90199 0.93342 1.22757 1.00049 0.98805 0.93965 1.23631 1.01670 0.88977 0.95896 1.63725 1.36925 1.15709 1.08903 1.23650 0.96161 1.01781 0.90787 1.20705 0.74821 0.80213 0.84332 1.93197 1.46287 1.89285 1.87699 1.93193 1.62471 1.96507 1.64504 1.93145 1.95658 1.40956 1.87115 1.22956 1.01042 0.97099 0.86412 0.94896 0.94484 0.91325 0.99574 0.99384 0.92968 0.96304 0.92363 0.83312 0.91293 0.90639 0.90027 0.91050 0.84075 0.88416 0.88619 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 8.89 71.98 0.64 -3.57 16 2 C -0.07 -2.89 2.48 -10.80 -0.03 -2.91 16 3 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 4 C 0.03 1.67 4.45 29.85 0.13 1.80 16 5 C -0.53 -29.67 8.41 25.60 0.22 -29.45 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 9 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.08 2.59 4.94 86.30 0.43 3.02 16 14 N -0.67 -16.62 5.77 -485.50 -2.80 -19.42 16 15 C 0.06 1.28 3.24 46.09 0.15 1.43 16 16 H 0.05 1.03 7.86 -2.38 -0.02 1.01 16 17 C -0.12 -2.44 6.77 32.05 0.22 -2.22 16 18 C 0.03 0.45 4.87 86.85 0.42 0.88 16 19 N -0.53 -8.39 5.24 -885.11 -4.64 -13.03 16 20 C 0.01 0.06 4.99 86.31 0.43 0.49 16 21 C 0.45 6.82 3.05 71.98 0.22 7.04 16 22 F -0.18 -3.37 17.24 44.97 0.78 -2.60 16 23 F -0.19 -2.85 17.32 44.97 0.78 -2.07 16 24 F -0.19 -3.22 13.38 44.97 0.60 -2.62 16 25 C 0.05 0.80 6.38 86.64 0.55 1.35 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 1.48 6.95 -2.39 -0.02 1.47 16 28 H 0.07 2.20 7.75 -2.38 -0.02 2.18 16 29 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 30 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.02 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.35 7.72 8.38 -89.69 -0.75 6.97 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.53 7.87 -2.39 -0.02 1.51 16 38 H 0.07 1.20 5.98 -2.39 -0.01 1.19 16 39 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 0.83 7.96 -2.39 -0.02 0.81 16 41 H 0.10 1.52 7.94 -2.39 -0.02 1.51 16 42 H 0.08 0.91 7.50 -2.38 -0.02 0.89 16 Total: -1.00 -63.97 343.80 1.13 -62.84 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.26 Total: 9.37 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 3.84 Total: -21.85 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -7.16 Total: -89.36 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 2.16 Total: -7.28 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.97 1.13 -62.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602534979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.163 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds