Wall clock time and date at job start Tue Mar 31 2020 07:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35788 * 116.99784 * 179.97438 * 5 4 3 7 7 C 1.38881 * 119.60175 * 180.02562 * 6 5 4 8 8 C 1.38344 * 119.18678 * 180.02562 * 7 6 5 9 9 C 1.39382 * 118.42226 * 0.02562 * 8 7 6 10 10 N 1.39983 * 120.43009 * 180.02562 * 9 8 7 11 11 C 1.46496 * 120.00137 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46676 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47162 * 55.00160 * 12 11 10 14 14 C 1.52999 * 109.47412 * 294.99726 * 12 11 10 15 15 C 1.53006 * 109.46712 * 174.99870 * 12 11 10 16 16 C 1.50696 * 109.47081 * 185.00145 * 15 12 11 17 17 H 1.08000 * 120.00113 * 359.97438 * 16 15 12 18 18 C 1.37879 * 120.00011 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99872 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47652 * 59.99550 * 20 18 16 22 22 H 1.48500 * 109.47145 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47322 * 299.99398 * 20 18 16 24 24 C 1.38673 * 119.14513 * 359.97438 * 9 8 7 25 25 N 1.31966 * 120.73032 * 359.73451 * 24 9 8 26 26 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 27 27 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 28 28 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 30 30 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 31 31 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 32 32 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 33 33 H 1.07994 * 120.40845 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.78875 * 180.02562 * 8 7 6 35 35 H 0.97004 * 119.99592 * 359.97438 * 10 9 8 36 36 H 1.08994 * 109.47091 * 299.99839 * 11 10 9 37 37 H 1.08996 * 109.47140 * 60.00080 * 11 10 9 38 38 H 1.08997 * 109.47247 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47312 * 300.00343 * 14 12 11 40 40 H 1.08994 * 109.46643 * 60.00198 * 14 12 11 41 41 H 1.08997 * 109.47244 * 305.00219 * 15 12 11 42 42 H 1.09005 * 109.46996 * 65.00395 * 15 12 11 43 43 H 0.97002 * 119.99797 * 180.02562 * 19 18 16 44 44 H 1.07997 * 119.63518 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3019 0.3987 -1.3811 7 6 5.7798 -0.1844 -2.5474 8 6 7.1426 -0.3649 -2.7022 9 6 7.9876 0.0483 -1.6735 10 7 9.3734 -0.1137 -1.7861 11 6 10.2528 0.3244 -0.6994 12 6 11.7080 0.0344 -1.0727 13 1 11.9368 0.4998 -2.0315 14 6 11.9162 -1.4777 -1.1771 15 6 12.6338 0.6036 0.0043 16 6 14.0684 0.4272 -0.4221 17 1 14.2970 -0.0442 -1.3665 18 6 15.0892 0.8665 0.3941 19 7 14.8108 1.4400 1.5444 20 14 16.8674 0.6485 -0.1348 21 1 17.0955 1.3682 -1.4136 22 1 17.7660 1.2007 0.9106 23 1 17.1546 -0.7964 -0.3220 24 6 7.4377 0.6229 -0.5376 25 7 6.1325 0.7843 -0.4277 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.9783 2.1768 0.0902 32 1 3.8508 0.5687 0.8427 33 1 5.0958 -0.4940 -3.3238 34 1 7.5424 -0.8153 -3.5987 35 1 9.7514 -0.5161 -2.5837 36 1 10.1251 1.3947 -0.5379 37 1 9.9981 -0.2138 0.2135 38 1 12.9530 -1.6843 -1.4425 39 1 11.6874 -1.9430 -0.2183 40 1 11.2566 -1.8831 -1.9443 41 1 12.4233 1.6643 0.1410 42 1 12.4664 0.0759 0.9433 43 1 15.5290 1.7494 2.1184 44 1 8.0850 0.9463 0.2641 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602575207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:57 Heat of formation + Delta-G solvation = -61.383903 kcal Electronic energy + Delta-G solvation = -22481.465781 eV Core-core repulsion = 19012.910625 eV Total energy + Delta-G solvation = -3468.555156 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49253 -38.67076 -37.69893 -36.54622 -34.06642 -32.39523 -31.94108 -30.77626 -28.47853 -26.88486 -26.60635 -25.89564 -24.12916 -23.16944 -22.20106 -21.80954 -19.37973 -18.50555 -17.16571 -17.05423 -16.63741 -16.25934 -16.00084 -15.50772 -15.27853 -14.77603 -14.61693 -14.49827 -14.18230 -13.59019 -13.42131 -13.29596 -12.86370 -12.66490 -12.55386 -12.27249 -12.08498 -11.84394 -11.64307 -11.50236 -11.11966 -10.94837 -10.84995 -10.45349 -10.42097 -10.18219 -10.04630 -9.87217 -9.53543 -9.35351 -9.23973 -9.09455 -8.39474 -7.11042 -6.04103 -4.06228 1.26189 1.58278 3.07896 3.30233 3.35391 3.36966 3.43656 3.64601 3.95606 4.42429 4.50868 4.68605 4.85344 4.93900 4.97476 5.01315 5.03464 5.07171 5.27971 5.30236 5.31694 5.37737 5.48835 5.57378 5.63723 5.71053 5.87390 5.90904 6.08264 6.16434 6.28861 6.38032 6.43124 6.78708 6.79734 6.96084 7.00121 7.29435 7.47360 7.58695 7.72256 7.81837 7.94098 8.08064 8.36299 8.99162 9.57608 11.07159 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038903 B = 0.002131 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.566486 B =13136.567473 C =13618.385037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.061 3.939 4 C 0.076 3.924 5 O -0.306 6.306 6 C 0.251 3.749 7 C -0.137 4.137 8 C -0.128 4.128 9 C 0.145 3.855 10 N -0.735 5.735 11 C 0.124 3.876 12 C -0.095 4.095 13 H 0.062 0.938 14 C -0.132 4.132 15 C 0.030 3.970 16 C -0.518 4.518 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.059 3.941 25 N -0.500 5.500 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.399 0.601 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.030 0.970 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.328 -1.753 -5.770 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.015 4.015 4 C 0.000 4.000 5 O -0.214 6.214 6 C 0.070 3.930 7 C -0.158 4.158 8 C -0.158 4.158 9 C 0.039 3.961 10 N -0.364 5.364 11 C 0.000 4.000 12 C -0.114 4.114 13 H 0.081 0.919 14 C -0.190 4.190 15 C -0.007 4.007 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.102 4.102 25 N -0.222 5.222 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.234 0.766 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.586 -1.438 -4.844 25.100 hybrid contribution 1.404 -0.245 -1.000 1.741 sum -23.183 -1.683 -5.844 23.967 Atomic orbital electron populations 1.22748 0.81084 1.02880 0.99872 1.87985 1.19608 1.27371 1.95386 1.22659 0.92216 0.85519 1.01140 1.22519 0.92005 0.98844 0.86598 1.86227 1.18081 1.77605 1.39537 1.19463 0.83741 0.98043 0.91714 1.20741 0.95210 1.02624 0.97242 1.20855 0.92023 1.03736 0.99194 1.18799 0.85640 0.96677 0.95032 1.44900 1.01481 1.67945 1.22124 1.21677 0.90455 0.98758 0.89066 1.21437 0.91897 0.96403 1.01696 0.91917 1.21723 1.01493 0.95716 1.00019 1.19081 0.92983 0.95976 0.92707 1.21145 0.91020 1.38917 1.04540 0.92612 1.25014 0.99138 0.95288 0.95010 1.69946 1.32500 1.40165 1.10731 0.86670 0.84756 0.78414 0.78219 1.20294 1.21315 1.20281 1.21935 0.89587 1.01457 0.97215 1.67117 1.04848 1.20217 1.30030 0.94129 0.94025 0.89575 0.91242 0.92329 0.90309 0.90995 0.84583 0.84565 0.76583 0.92393 0.92461 0.91752 0.93436 0.95088 0.96401 0.96260 0.92912 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.09 10.67 -40.09 -0.43 -4.52 16 3 C 0.06 0.53 6.32 37.16 0.23 0.77 16 4 C 0.08 0.84 5.69 37.16 0.21 1.05 16 5 O -0.31 -4.13 10.08 -23.93 -0.24 -4.37 16 6 C 0.25 3.55 7.49 -17.16 -0.13 3.42 16 7 C -0.14 -1.69 10.03 -39.30 -0.39 -2.08 16 8 C -0.13 -1.52 10.04 -39.12 -0.39 -1.91 16 9 C 0.15 1.97 6.68 -83.55 -0.56 1.41 16 10 N -0.73 -9.92 5.48 -58.49 -0.32 -10.24 16 11 C 0.12 1.95 4.32 -4.04 -0.02 1.93 16 12 C -0.10 -1.77 2.37 -90.61 -0.22 -1.99 16 13 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.13 -2.29 8.88 37.16 0.33 -1.96 16 15 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 16 C -0.52 -13.91 8.41 -34.44 -0.29 -14.20 16 17 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.06 0.86 10.49 -17.33 -0.18 0.67 16 25 N -0.50 -7.42 9.20 -13.17 -0.12 -7.54 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.40 4.87 7.68 -40.82 -0.31 4.56 16 36 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 37 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 38 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.03 0.44 7.18 -51.93 -0.37 0.07 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.16 2.17 6.75 -52.49 -0.35 1.82 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -30.94 366.66 -7.61 -38.55 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.23 Total: 1.39 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.51 Total: -9.48 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.29 Total: -43.24 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.67 Total: -8.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.94 -7.61 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602575207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.838 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds