Wall clock time and date at job start Tue Mar 31 2020 07:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35788 * 116.99784 * 179.97438 * 5 4 3 7 7 C 1.38881 * 119.60175 * 180.02562 * 6 5 4 8 8 C 1.38344 * 119.18678 * 180.02562 * 7 6 5 9 9 C 1.39382 * 118.42226 * 0.02562 * 8 7 6 10 10 N 1.39983 * 120.43009 * 180.02562 * 9 8 7 11 11 C 1.46496 * 120.00137 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46676 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47162 * 55.00160 * 12 11 10 14 14 C 1.52999 * 109.47412 * 294.99726 * 12 11 10 15 15 C 1.53006 * 109.46712 * 174.99870 * 12 11 10 16 16 C 1.50696 * 109.47081 * 185.00145 * 15 12 11 17 17 H 1.08000 * 120.00113 * 359.97438 * 16 15 12 18 18 C 1.37879 * 120.00011 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99872 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47652 * 59.99550 * 20 18 16 22 22 H 1.48500 * 109.47145 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47322 * 299.99398 * 20 18 16 24 24 C 1.38673 * 119.14513 * 359.97438 * 9 8 7 25 25 N 1.31966 * 120.73032 * 359.73451 * 24 9 8 26 26 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 27 27 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 28 28 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 30 30 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 31 31 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 32 32 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 33 33 H 1.07994 * 120.40845 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.78875 * 180.02562 * 8 7 6 35 35 H 0.97004 * 119.99592 * 359.97438 * 10 9 8 36 36 H 1.08994 * 109.47091 * 299.99839 * 11 10 9 37 37 H 1.08996 * 109.47140 * 60.00080 * 11 10 9 38 38 H 1.08997 * 109.47247 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47312 * 300.00343 * 14 12 11 40 40 H 1.08994 * 109.46643 * 60.00198 * 14 12 11 41 41 H 1.08997 * 109.47244 * 305.00219 * 15 12 11 42 42 H 1.09005 * 109.46996 * 65.00395 * 15 12 11 43 43 H 0.97002 * 119.99797 * 180.02562 * 19 18 16 44 44 H 1.07997 * 119.63518 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3019 0.3987 -1.3811 7 6 5.7798 -0.1844 -2.5474 8 6 7.1426 -0.3649 -2.7022 9 6 7.9876 0.0483 -1.6735 10 7 9.3734 -0.1137 -1.7861 11 6 10.2528 0.3244 -0.6994 12 6 11.7080 0.0344 -1.0727 13 1 11.9368 0.4998 -2.0315 14 6 11.9162 -1.4777 -1.1771 15 6 12.6338 0.6036 0.0043 16 6 14.0684 0.4272 -0.4221 17 1 14.2970 -0.0442 -1.3665 18 6 15.0892 0.8665 0.3941 19 7 14.8108 1.4400 1.5444 20 14 16.8674 0.6485 -0.1348 21 1 17.0955 1.3682 -1.4136 22 1 17.7660 1.2007 0.9106 23 1 17.1546 -0.7964 -0.3220 24 6 7.4377 0.6229 -0.5376 25 7 6.1325 0.7843 -0.4277 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.9783 2.1768 0.0902 32 1 3.8508 0.5687 0.8427 33 1 5.0958 -0.4940 -3.3238 34 1 7.5424 -0.8153 -3.5987 35 1 9.7514 -0.5161 -2.5837 36 1 10.1251 1.3947 -0.5379 37 1 9.9981 -0.2138 0.2135 38 1 12.9530 -1.6843 -1.4425 39 1 11.6874 -1.9430 -0.2183 40 1 11.2566 -1.8831 -1.9443 41 1 12.4233 1.6643 0.1410 42 1 12.4664 0.0759 0.9433 43 1 15.5290 1.7494 2.1184 44 1 8.0850 0.9463 0.2641 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602575207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:57 Heat of formation + Delta-G solvation = -82.324882 kcal Electronic energy + Delta-G solvation = -22482.373850 eV Core-core repulsion = 19012.910625 eV Total energy + Delta-G solvation = -3469.463225 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50961 -39.58095 -38.59622 -37.81540 -35.58357 -34.04319 -33.12249 -31.64051 -29.73317 -28.56390 -27.23986 -27.19079 -25.28653 -24.64235 -23.10295 -23.02604 -20.89841 -19.46360 -18.57870 -18.16397 -17.81487 -17.49824 -16.72721 -16.51303 -16.39921 -16.13679 -15.95087 -15.72773 -15.26457 -14.74341 -14.44583 -14.33085 -14.20470 -14.13022 -13.71453 -13.46696 -13.26882 -13.15860 -12.76223 -12.72820 -12.49499 -12.37671 -12.24804 -12.06522 -11.93738 -11.60362 -11.18703 -11.13050 -11.02913 -10.70301 -10.53852 -10.51884 -10.27394 -8.19179 -8.16531 -6.25451 0.26378 0.54493 1.42007 1.43836 1.51456 2.16097 2.41283 2.54580 2.81459 2.91890 3.17533 3.49355 3.95776 3.99144 4.01530 4.14519 4.15065 4.20939 4.24309 4.40766 4.45326 4.51001 4.55125 4.58487 4.72705 4.76728 4.78750 4.84135 4.87478 4.94530 4.96533 5.10674 5.24251 5.33680 5.44124 5.48644 5.54138 5.79232 5.88346 6.15488 6.20422 6.30305 6.42979 6.80551 6.90589 7.04498 7.42841 8.95078 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038903 B = 0.002131 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.566486 B =13136.567473 C =13618.385037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.064 3.936 4 C 0.072 3.928 5 O -0.316 6.316 6 C 0.236 3.764 7 C -0.136 4.136 8 C -0.114 4.114 9 C 0.138 3.862 10 N -0.728 5.728 11 C 0.139 3.861 12 C -0.084 4.084 13 H 0.066 0.934 14 C -0.126 4.126 15 C 0.033 3.967 16 C -0.530 4.530 17 H 0.064 0.936 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.960 3.040 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.039 3.961 25 N -0.518 5.518 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.409 0.591 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.067 0.933 41 H -0.009 1.009 42 H -0.006 1.006 43 H 0.261 0.739 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.141 -2.583 -7.842 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.012 4.012 4 C -0.003 4.003 5 O -0.224 6.224 6 C 0.055 3.945 7 C -0.157 4.157 8 C -0.144 4.144 9 C 0.032 3.968 10 N -0.359 5.359 11 C 0.015 3.985 12 C -0.103 4.103 13 H 0.084 0.916 14 C -0.183 4.183 15 C -0.005 4.005 16 C -0.568 4.568 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.785 3.215 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.193 1.193 24 C -0.122 4.122 25 N -0.241 5.241 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.179 0.821 34 H 0.187 0.813 35 H 0.246 0.754 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.010 0.990 42 H 0.012 0.988 43 H 0.070 0.930 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -25.417 -2.278 -6.939 26.445 hybrid contribution 1.539 0.022 -0.346 1.578 sum -23.878 -2.256 -7.285 25.066 Atomic orbital electron populations 1.22930 0.79253 1.03786 1.01087 1.87928 1.21729 1.28447 1.95668 1.22721 0.90397 0.85282 1.02783 1.22672 0.93805 0.98483 0.85349 1.86222 1.17813 1.77852 1.40547 1.19863 0.84009 0.98355 0.92321 1.21085 0.95884 1.01633 0.97078 1.21198 0.91518 1.02243 0.99460 1.18853 0.85564 0.97046 0.95352 1.44594 1.01247 1.68308 1.21769 1.21289 0.89184 0.98365 0.89693 1.21193 0.92351 0.97151 0.99584 0.91589 1.21643 1.01301 0.94490 1.00850 1.18973 0.93639 0.94356 0.93537 1.21604 0.92348 1.38151 1.04671 0.91809 1.25933 1.03847 0.95138 0.95067 1.70089 1.33785 1.41531 1.12035 0.85581 0.79234 0.78774 0.77937 1.19293 1.21333 1.19254 1.21965 0.89667 1.02596 0.97923 1.67062 1.05104 1.21045 1.30887 0.92637 0.93037 0.88944 0.88756 0.91368 0.89902 0.92515 0.82137 0.81323 0.75426 0.93179 0.92880 0.93399 0.94141 0.91463 0.99036 0.98800 0.92992 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.51 10.67 -144.34 -1.54 -10.05 16 3 C 0.06 1.05 6.32 71.98 0.45 1.50 16 4 C 0.07 1.58 5.69 71.98 0.41 1.99 16 5 O -0.32 -8.35 10.08 -86.53 -0.87 -9.23 16 6 C 0.24 6.49 7.49 84.79 0.63 7.12 16 7 C -0.14 -3.04 10.03 22.45 0.23 -2.81 16 8 C -0.11 -2.39 10.04 22.57 0.23 -2.16 16 9 C 0.14 3.52 6.68 38.22 0.26 3.78 16 10 N -0.73 -18.32 5.48 -338.95 -1.86 -20.17 16 11 C 0.14 4.34 4.32 86.38 0.37 4.71 16 12 C -0.08 -3.08 2.37 -10.79 -0.03 -3.11 16 13 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.13 -4.17 8.88 71.98 0.64 -3.53 16 15 C 0.03 1.62 4.45 29.85 0.13 1.75 16 16 C -0.53 -28.69 8.41 25.60 0.22 -28.47 16 17 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 19 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 20 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.04 1.12 10.49 84.78 0.89 2.01 16 25 N -0.52 -15.45 9.20 -308.41 -2.84 -18.29 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.06 1.38 8.11 -2.39 -0.02 1.36 16 33 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.41 8.73 7.68 -92.71 -0.71 8.02 16 36 H 0.05 1.64 7.96 -2.39 -0.02 1.62 16 37 H 0.05 1.71 7.97 -2.39 -0.02 1.69 16 38 H 0.05 1.74 6.95 -2.39 -0.02 1.72 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.74 7.18 -2.39 -0.02 1.72 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 43 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.15 4.36 6.75 -2.91 -0.02 4.34 16 Total: -1.00 -67.69 366.66 1.61 -66.08 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.27 Total: 17.23 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 6.14 Total: -15.33 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -4.41 Total: -94.17 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -2.41 Total: -19.28 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.69 1.61 -66.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602575207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.249 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds