Wall clock time and date at job start Tue Mar 31 2020 07:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35788 * 116.99784 * 179.97438 * 5 4 3 7 7 C 1.38881 * 119.60175 * 180.02562 * 6 5 4 8 8 C 1.38344 * 119.18678 * 180.02562 * 7 6 5 9 9 C 1.39382 * 118.42226 * 0.02562 * 8 7 6 10 10 N 1.39983 * 120.43009 * 180.02562 * 9 8 7 11 11 C 1.46496 * 120.00137 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46676 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47557 * 304.99805 * 12 11 10 14 14 C 1.52997 * 109.46912 * 65.00323 * 12 11 10 15 15 C 1.53006 * 109.46552 * 185.00013 * 12 11 10 16 16 C 1.50702 * 109.46951 * 175.00227 * 15 12 11 17 17 H 1.08003 * 119.99871 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00354 * 179.97438 * 16 15 12 19 19 N 1.31514 * 120.00352 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99792 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47284 * 89.99629 * 20 18 16 22 22 H 1.48497 * 109.47279 * 209.99849 * 20 18 16 23 23 H 1.48501 * 109.46897 * 329.99598 * 20 18 16 24 24 C 1.38673 * 119.14513 * 359.97438 * 9 8 7 25 25 N 1.31966 * 120.73032 * 359.73451 * 24 9 8 26 26 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 27 27 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 29 29 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 30 30 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 31 31 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 32 32 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 33 33 H 1.07994 * 120.40845 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.78875 * 180.02562 * 8 7 6 35 35 H 0.97004 * 119.99592 * 359.97438 * 10 9 8 36 36 H 1.08994 * 109.47091 * 299.99839 * 11 10 9 37 37 H 1.08996 * 109.47140 * 60.00080 * 11 10 9 38 38 H 1.08995 * 109.47131 * 299.99222 * 14 12 11 39 39 H 1.09004 * 109.47217 * 60.00037 * 14 12 11 40 40 H 1.09002 * 109.46847 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.47451 * 294.99847 * 15 12 11 42 42 H 1.08994 * 109.47164 * 55.00486 * 15 12 11 43 43 H 0.97001 * 119.99591 * 179.97438 * 19 18 16 44 44 H 1.07997 * 119.63518 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3019 0.3987 -1.3811 7 6 5.7798 -0.1844 -2.5474 8 6 7.1426 -0.3649 -2.7022 9 6 7.9876 0.0483 -1.6735 10 7 9.3734 -0.1137 -1.7861 11 6 10.2528 0.3244 -0.6994 12 6 11.7080 0.0344 -1.0727 13 1 11.8162 -1.0215 -1.3203 14 6 12.1036 0.8849 -2.2814 15 6 12.6158 0.3764 0.1106 16 6 14.0327 -0.0233 -0.2115 17 1 14.2627 -0.4762 -1.1646 18 6 15.0355 0.1893 0.7106 19 7 16.2719 -0.1599 0.4297 20 14 14.6376 0.9721 2.3594 21 1 14.2991 -0.0885 3.3421 22 1 15.8160 1.7361 2.8419 23 1 13.4814 1.8911 2.2048 24 6 7.4377 0.6229 -0.5376 25 7 6.1325 0.7843 -0.4277 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.9783 2.1768 0.0902 32 1 3.8508 0.5687 0.8427 33 1 5.0958 -0.4940 -3.3238 34 1 7.5424 -0.8153 -3.5987 35 1 9.7514 -0.5161 -2.5837 36 1 10.1251 1.3947 -0.5379 37 1 9.9981 -0.2138 0.2135 38 1 11.4569 0.6413 -3.1243 39 1 11.9955 1.9409 -2.0337 40 1 13.1404 0.6786 -2.5471 41 1 12.5753 1.4487 0.3016 42 1 12.2782 -0.1634 0.9953 43 1 16.9774 -0.0100 1.0784 44 1 8.0850 0.9463 0.2641 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602575208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:00 Heat of formation + Delta-G solvation = -57.709580 kcal Electronic energy + Delta-G solvation = -22543.167897 eV Core-core repulsion = 19074.772071 eV Total energy + Delta-G solvation = -3468.395825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55193 -38.72176 -37.75462 -36.65524 -34.14026 -32.41790 -32.00139 -30.84591 -28.69468 -27.35593 -26.64719 -25.97026 -24.16400 -23.00586 -22.23551 -21.70701 -19.40615 -18.55980 -17.32040 -17.10712 -16.78738 -16.49087 -16.05142 -15.55495 -15.36429 -14.87906 -14.74596 -14.32213 -14.10394 -13.63404 -13.49598 -13.40723 -13.08263 -12.75008 -12.50625 -12.41752 -12.29218 -11.91348 -11.85098 -11.61199 -11.21306 -11.08363 -10.85021 -10.55745 -10.26036 -10.08077 -10.02553 -9.78927 -9.67624 -9.59147 -9.31071 -9.17022 -8.57737 -7.18072 -6.08117 -4.06339 1.20428 1.52243 3.02773 3.28144 3.36216 3.38574 3.40157 3.56742 3.89594 4.41560 4.44256 4.64714 4.81470 4.89001 4.92020 4.97190 5.00292 5.02363 5.23495 5.24916 5.25607 5.33749 5.37634 5.50700 5.52798 5.64230 5.76655 5.84305 5.99787 6.06845 6.20176 6.27161 6.36222 6.63938 6.75991 6.78296 6.95395 7.14607 7.21868 7.33796 7.40754 7.73260 7.75610 8.01601 8.48635 8.95973 9.54024 11.04981 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028676 B = 0.002321 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.195378 B =12060.266961 C =12816.632127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.061 3.939 4 C 0.076 3.924 5 O -0.306 6.306 6 C 0.252 3.748 7 C -0.137 4.137 8 C -0.126 4.126 9 C 0.145 3.855 10 N -0.735 5.735 11 C 0.122 3.878 12 C -0.087 4.087 13 H 0.069 0.931 14 C -0.134 4.134 15 C -0.007 4.007 16 C -0.517 4.517 17 H 0.074 0.926 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.058 3.942 25 N -0.501 5.501 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.400 0.600 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.013 0.987 43 H 0.263 0.737 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.841 2.660 -3.840 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C 0.000 4.000 5 O -0.214 6.214 6 C 0.072 3.928 7 C -0.158 4.158 8 C -0.156 4.156 9 C 0.038 3.962 10 N -0.364 5.364 11 C -0.002 4.002 12 C -0.106 4.106 13 H 0.087 0.913 14 C -0.191 4.191 15 C -0.044 4.044 16 C -0.555 4.555 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.103 4.103 25 N -0.223 5.223 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.236 0.764 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -28.001 2.895 -3.007 28.310 hybrid contribution 0.341 0.193 0.124 0.411 sum -27.660 3.088 -2.884 27.981 Atomic orbital electron populations 1.22751 0.81049 1.02907 0.99879 1.87985 1.19637 1.27336 1.95387 1.22656 0.92185 0.85551 1.01150 1.22520 0.92048 0.98805 0.86582 1.86232 1.18051 1.77577 1.39539 1.19467 0.83746 0.97947 0.91684 1.20757 0.95229 1.02530 0.97253 1.20868 0.92009 1.03559 0.99195 1.18788 0.85577 0.96758 0.95059 1.44843 1.01457 1.68010 1.22140 1.21686 0.90525 0.98827 0.89152 1.21238 0.91134 1.00163 0.98033 0.91292 1.21731 1.01918 0.99281 0.96172 1.19572 0.95419 0.96640 0.92813 1.21074 0.90167 1.40650 1.03620 0.90834 1.25025 0.94963 0.95149 0.98381 1.69908 1.00339 1.48069 1.35838 0.86806 0.78110 0.80014 0.84516 1.20306 1.21427 1.18979 1.21902 0.89609 1.01609 0.97162 1.67111 1.04829 1.20289 1.30054 0.94009 0.89551 0.94127 0.91245 0.92313 0.90337 0.91002 0.84508 0.84469 0.76417 0.92472 0.92440 0.94822 0.93496 0.91215 0.96315 0.96855 0.92725 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.98 10.67 -40.09 -0.43 -4.41 16 3 C 0.06 0.51 6.32 37.16 0.23 0.75 16 4 C 0.08 0.81 5.69 37.16 0.21 1.02 16 5 O -0.31 -4.00 10.08 -23.93 -0.24 -4.24 16 6 C 0.25 3.45 7.49 -17.16 -0.13 3.32 16 7 C -0.14 -1.62 10.03 -39.30 -0.39 -2.02 16 8 C -0.13 -1.44 10.04 -39.12 -0.39 -1.83 16 9 C 0.14 1.87 6.68 -83.55 -0.56 1.32 16 10 N -0.73 -9.43 5.48 -58.49 -0.32 -9.75 16 11 C 0.12 1.79 4.32 -4.04 -0.02 1.77 16 12 C -0.09 -1.54 2.37 -90.61 -0.22 -1.75 16 13 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.13 -2.26 8.88 37.16 0.33 -1.93 16 15 C -0.01 -0.15 3.52 -27.88 -0.10 -0.24 16 16 C -0.52 -14.02 8.96 -34.44 -0.31 -14.32 16 17 H 0.07 2.14 7.30 -52.48 -0.38 1.75 16 18 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 20 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 24 C 0.06 0.80 10.49 -17.33 -0.18 0.62 16 25 N -0.50 -7.14 9.20 -13.17 -0.12 -7.26 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 35 H 0.40 4.68 7.68 -40.82 -0.31 4.37 16 36 H 0.06 0.83 7.96 -51.93 -0.41 0.42 16 37 H 0.06 0.85 7.97 -51.93 -0.41 0.43 16 38 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 41 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 42 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.16 2.01 6.75 -52.49 -0.35 1.66 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -31.55 363.06 -7.23 -38.79 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.19 Total: 1.57 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.50 Total: -10.22 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.33 Total: -43.50 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.67 Total: -8.65 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.55 -7.23 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602575208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.924 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds