Wall clock time and date at job start Tue Mar 31 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35788 * 116.99784 * 179.97438 * 5 4 3 7 7 C 1.38881 * 119.60175 * 180.02562 * 6 5 4 8 8 C 1.38344 * 119.18678 * 180.02562 * 7 6 5 9 9 C 1.39382 * 118.42226 * 0.02562 * 8 7 6 10 10 N 1.39983 * 120.43009 * 180.02562 * 9 8 7 11 11 C 1.46496 * 120.00137 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46676 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47557 * 304.99805 * 12 11 10 14 14 C 1.52997 * 109.46912 * 65.00323 * 12 11 10 15 15 C 1.53006 * 109.46552 * 185.00013 * 12 11 10 16 16 C 1.50702 * 109.46951 * 175.00227 * 15 12 11 17 17 H 1.08003 * 119.99871 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00354 * 179.97438 * 16 15 12 19 19 N 1.31514 * 120.00352 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99792 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47284 * 89.99629 * 20 18 16 22 22 H 1.48497 * 109.47279 * 209.99849 * 20 18 16 23 23 H 1.48501 * 109.46897 * 329.99598 * 20 18 16 24 24 C 1.38673 * 119.14513 * 359.97438 * 9 8 7 25 25 N 1.31966 * 120.73032 * 359.73451 * 24 9 8 26 26 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 27 27 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 29 29 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 30 30 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 31 31 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 32 32 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 33 33 H 1.07994 * 120.40845 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.78875 * 180.02562 * 8 7 6 35 35 H 0.97004 * 119.99592 * 359.97438 * 10 9 8 36 36 H 1.08994 * 109.47091 * 299.99839 * 11 10 9 37 37 H 1.08996 * 109.47140 * 60.00080 * 11 10 9 38 38 H 1.08995 * 109.47131 * 299.99222 * 14 12 11 39 39 H 1.09004 * 109.47217 * 60.00037 * 14 12 11 40 40 H 1.09002 * 109.46847 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.47451 * 294.99847 * 15 12 11 42 42 H 1.08994 * 109.47164 * 55.00486 * 15 12 11 43 43 H 0.97001 * 119.99591 * 179.97438 * 19 18 16 44 44 H 1.07997 * 119.63518 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3019 0.3987 -1.3811 7 6 5.7798 -0.1844 -2.5474 8 6 7.1426 -0.3649 -2.7022 9 6 7.9876 0.0483 -1.6735 10 7 9.3734 -0.1137 -1.7861 11 6 10.2528 0.3244 -0.6994 12 6 11.7080 0.0344 -1.0727 13 1 11.8162 -1.0215 -1.3203 14 6 12.1036 0.8849 -2.2814 15 6 12.6158 0.3764 0.1106 16 6 14.0327 -0.0233 -0.2115 17 1 14.2627 -0.4762 -1.1646 18 6 15.0355 0.1893 0.7106 19 7 16.2719 -0.1599 0.4297 20 14 14.6376 0.9721 2.3594 21 1 14.2991 -0.0885 3.3421 22 1 15.8160 1.7361 2.8419 23 1 13.4814 1.8911 2.2048 24 6 7.4377 0.6229 -0.5376 25 7 6.1325 0.7843 -0.4277 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.9783 2.1768 0.0902 32 1 3.8508 0.5687 0.8427 33 1 5.0958 -0.4940 -3.3238 34 1 7.5424 -0.8153 -3.5987 35 1 9.7514 -0.5161 -2.5837 36 1 10.1251 1.3947 -0.5379 37 1 9.9981 -0.2138 0.2135 38 1 11.4569 0.6413 -3.1243 39 1 11.9955 1.9409 -2.0337 40 1 13.1404 0.6786 -2.5471 41 1 12.5753 1.4487 0.3016 42 1 12.2782 -0.1634 0.9953 43 1 16.9774 -0.0100 1.0784 44 1 8.0850 0.9463 0.2641 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602575208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:59 Heat of formation + Delta-G solvation = -79.912434 kcal Electronic energy + Delta-G solvation = -22544.130685 eV Core-core repulsion = 19074.772071 eV Total energy + Delta-G solvation = -3469.358613 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50395 -39.58190 -38.60744 -37.84324 -35.56303 -34.10942 -33.14305 -31.66903 -30.01788 -28.83012 -27.22920 -27.18052 -25.16819 -24.41737 -23.08901 -22.93820 -20.87552 -19.46276 -19.00370 -18.14729 -17.81268 -17.53488 -16.74709 -16.43155 -16.38493 -16.02941 -15.94875 -15.70237 -15.28547 -14.95253 -14.66335 -14.28790 -14.27623 -14.04207 -13.79969 -13.63058 -13.30664 -13.20888 -12.86147 -12.66109 -12.48719 -12.34337 -12.14408 -11.96346 -11.79081 -11.55162 -11.35202 -11.15871 -11.09899 -10.72717 -10.70316 -10.53534 -10.26799 -8.25296 -8.18122 -6.27735 0.27071 0.54733 1.38136 1.39706 1.50670 2.16619 2.38553 2.52982 2.81574 2.92628 3.10571 3.50014 3.95032 3.99377 3.99907 4.13563 4.14956 4.18098 4.24150 4.35309 4.45288 4.50819 4.55025 4.58256 4.72517 4.76153 4.77326 4.81905 4.87286 4.91779 4.96025 5.06931 5.12132 5.26084 5.37029 5.43771 5.51849 5.67781 5.71524 6.17275 6.21873 6.33789 6.44013 6.79086 6.80352 7.04279 7.36029 8.91057 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028676 B = 0.002321 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.195378 B =12060.266961 C =12816.632127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.064 3.936 4 C 0.073 3.927 5 O -0.317 6.317 6 C 0.236 3.764 7 C -0.138 4.138 8 C -0.116 4.116 9 C 0.138 3.862 10 N -0.730 5.730 11 C 0.136 3.864 12 C -0.080 4.080 13 H 0.061 0.939 14 C -0.128 4.128 15 C -0.007 4.007 16 C -0.518 4.518 17 H 0.037 0.963 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.945 3.055 21 H -0.270 1.270 22 H -0.289 1.289 23 H -0.243 1.243 24 C 0.042 3.958 25 N -0.518 5.518 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.407 0.593 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.023 0.977 42 H 0.019 0.981 43 H 0.264 0.736 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.421 3.373 -3.762 30.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.013 4.013 4 C -0.003 4.003 5 O -0.225 6.225 6 C 0.055 3.945 7 C -0.159 4.159 8 C -0.146 4.146 9 C 0.032 3.968 10 N -0.362 5.362 11 C 0.011 3.989 12 C -0.099 4.099 13 H 0.079 0.921 14 C -0.185 4.185 15 C -0.045 4.045 16 C -0.556 4.556 17 H 0.055 0.945 18 C -0.195 4.195 19 N -0.595 5.595 20 Si 0.769 3.231 21 H -0.195 1.195 22 H -0.215 1.215 23 H -0.167 1.167 24 C -0.119 4.119 25 N -0.240 5.240 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.176 0.824 34 H 0.184 0.816 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -30.615 3.608 -2.943 30.967 hybrid contribution 1.095 -0.081 0.008 1.098 sum -29.521 3.528 -2.936 29.875 Atomic orbital electron populations 1.22926 0.79277 1.03765 1.01081 1.87929 1.21704 1.28486 1.95667 1.22730 0.90496 0.85265 1.02767 1.22673 0.93731 0.98529 0.85328 1.86225 1.17880 1.77854 1.40584 1.19837 0.84006 0.98362 0.92301 1.21068 0.95880 1.01757 0.97152 1.21186 0.91583 1.02313 0.99558 1.18840 0.85491 0.97076 0.95368 1.44615 1.01288 1.68339 1.21916 1.21373 0.88523 0.99269 0.89696 1.21060 0.92476 0.99827 0.96535 0.92060 1.21652 1.00555 0.99270 0.97043 1.19539 0.93352 0.96676 0.94920 1.21437 0.92863 1.39310 1.02007 0.94461 1.25986 0.94727 0.96099 1.02734 1.70069 1.01641 1.50275 1.37466 0.85734 0.78472 0.79488 0.79412 1.19485 1.21519 1.16653 1.22022 0.89642 1.02386 0.97830 1.67075 1.05163 1.21037 1.30738 0.93064 0.88989 0.92616 0.88735 0.91428 0.89772 0.92460 0.82398 0.81649 0.75594 0.91887 0.92312 0.91617 0.93219 0.94499 0.95905 0.96255 0.92754 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -8.20 10.67 -144.34 -1.54 -9.74 16 3 C 0.06 0.97 6.32 71.98 0.45 1.43 16 4 C 0.07 1.49 5.69 71.98 0.41 1.90 16 5 O -0.32 -8.03 10.08 -86.53 -0.87 -8.90 16 6 C 0.24 6.17 7.49 84.79 0.63 6.80 16 7 C -0.14 -2.96 10.03 22.45 0.23 -2.73 16 8 C -0.12 -2.32 10.04 22.57 0.23 -2.09 16 9 C 0.14 3.26 6.68 38.22 0.26 3.51 16 10 N -0.73 -16.88 5.48 -338.95 -1.86 -18.73 16 11 C 0.14 3.68 4.32 86.38 0.37 4.06 16 12 C -0.08 -2.74 2.37 -10.79 -0.03 -2.77 16 13 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 14 C -0.13 -4.18 8.88 71.98 0.64 -3.54 16 15 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 16 C -0.52 -28.56 8.96 25.60 0.23 -28.33 16 17 H 0.04 2.26 7.30 -2.91 -0.02 2.24 16 18 C 0.00 0.04 5.47 84.65 0.46 0.51 16 19 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 20 Si 0.94 43.47 27.47 68.60 1.88 45.35 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 24 C 0.04 1.08 10.49 84.78 0.89 1.97 16 25 N -0.52 -14.30 9.20 -308.41 -2.84 -17.14 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 32 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 33 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.41 8.32 7.68 -92.71 -0.71 7.61 16 36 H 0.06 1.67 7.96 -2.39 -0.02 1.65 16 37 H 0.06 1.60 7.97 -2.39 -0.02 1.58 16 38 H 0.06 1.70 7.18 -2.39 -0.02 1.68 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.04 1.43 6.95 -2.39 -0.02 1.41 16 41 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 42 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 43 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.16 3.87 6.75 -2.91 -0.02 3.85 16 Total: -1.00 -69.40 363.06 1.42 -67.98 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.21 Total: 18.00 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 6.13 Total: -17.94 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -4.40 Total: -94.76 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -2.41 Total: -18.64 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -69.40 1.42 -67.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602575208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.929 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds