Wall clock time and date at job start Tue Mar 31 2020 07:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35674 * 116.99673 * 2 1 4 4 C 1.38801 * 119.64777 * 180.02562 * 3 2 1 5 5 C 1.38536 * 119.23793 * 180.02562 * 4 3 2 6 6 C 1.38577 * 118.54440 * 0.27852 * 5 4 3 7 7 C 1.50700 * 120.37950 * 179.72349 * 6 5 4 8 8 N 1.46902 * 109.46996 * 259.99918 * 7 6 5 9 9 C 1.46902 * 110.99891 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47029 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47210 * 55.00051 * 10 9 8 12 12 C 1.53001 * 109.47400 * 294.99864 * 10 9 8 13 13 C 1.53003 * 109.47074 * 175.00212 * 10 9 8 14 14 C 1.50699 * 109.47069 * 185.00508 * 13 10 9 15 15 H 1.07996 * 119.99941 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00070 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99735 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00325 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46660 * 59.99774 * 18 16 14 20 20 H 1.48495 * 109.47426 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47080 * 300.00277 * 18 16 14 22 22 C 1.38758 * 119.23665 * 359.42768 * 6 5 4 23 23 O 1.35681 * 119.64746 * 180.27800 * 22 6 5 24 24 C 1.42898 * 116.99759 * 180.30287 * 23 22 6 25 25 N 1.32306 * 119.65131 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47451 * 299.99266 * 1 2 3 28 28 H 1.09002 * 109.47157 * 60.00022 * 1 2 3 29 29 H 1.08007 * 120.38058 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.72492 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.46900 * 19.99486 * 7 6 5 32 32 H 1.08999 * 109.47170 * 139.99547 * 7 6 5 33 33 H 1.00907 * 110.99362 * 303.94694 * 8 7 6 34 34 H 1.09000 * 109.47344 * 300.00110 * 9 8 7 35 35 H 1.09003 * 109.46964 * 59.99867 * 9 8 7 36 36 H 1.08999 * 109.47544 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.47092 * 300.00260 * 12 10 9 38 38 H 1.09006 * 109.46904 * 59.99646 * 12 10 9 39 39 H 1.09007 * 109.46805 * 304.99693 * 13 10 9 40 40 H 1.08991 * 109.47497 * 64.99675 * 13 10 9 41 41 H 0.97003 * 119.99696 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.46909 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47208 * 299.99832 * 24 23 22 44 44 H 1.09004 * 109.47036 * 60.00245 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4314 1.2731 -0.0005 5 6 4.0514 2.5120 0.0000 6 6 3.2592 3.6489 0.0070 7 6 3.8902 5.0175 0.0141 8 7 3.8779 5.5552 1.3811 9 6 4.4860 6.8916 1.4266 10 6 4.4544 7.4177 2.8629 11 1 4.9368 6.6980 3.5242 12 6 3.0022 7.6188 3.3006 13 6 5.1978 8.7532 2.9334 14 6 5.2733 9.2109 4.3672 15 1 4.8346 8.6098 5.1498 16 6 5.9025 10.3972 4.6799 17 7 6.4372 11.1290 3.7269 18 14 5.9956 10.9651 6.4571 19 1 6.7210 9.9508 7.2634 20 1 6.7183 12.2605 6.5256 21 1 4.6219 11.1349 6.9950 22 6 1.8783 3.5128 0.0011 23 8 1.0947 4.6205 0.0021 24 6 -0.3194 4.4147 0.0026 25 7 1.3175 2.3141 -0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.0201 0.3676 -0.0014 30 1 5.1286 2.5899 0.0000 31 1 4.9190 4.9450 -0.3385 32 1 3.3269 5.6807 -0.6423 33 1 2.9406 5.5719 1.7546 34 1 5.5189 6.8327 1.0835 35 1 3.9264 7.5676 0.7800 36 1 2.9796 7.9932 4.3241 37 1 2.5198 8.3385 2.6394 38 1 2.4725 6.6674 3.2503 39 1 6.2060 8.6290 2.5381 40 1 4.6648 9.4974 2.3419 41 1 6.8795 11.9639 3.9468 42 1 -0.8269 5.3794 0.0030 43 1 -0.6053 3.8545 -0.8876 44 1 -0.6046 3.8533 0.8924 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:02 Heat of formation + Delta-G solvation = -75.607881 kcal Electronic energy + Delta-G solvation = -23370.232396 eV Core-core repulsion = 19901.060442 eV Total energy + Delta-G solvation = -3469.171954 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99437 -39.95715 -38.56917 -38.00531 -35.82059 -34.24203 -33.03831 -31.57006 -28.97993 -28.77812 -28.00649 -26.98796 -25.73201 -24.11731 -23.80094 -22.77524 -20.64878 -19.89953 -18.95313 -18.51344 -17.41058 -17.21055 -16.87572 -16.60119 -16.51319 -16.06827 -15.96683 -15.62645 -15.05118 -14.75302 -14.49409 -14.39321 -14.24907 -13.95931 -13.63321 -13.30530 -13.06996 -12.95288 -12.87083 -12.73756 -12.60025 -12.53215 -12.38545 -12.21159 -11.91349 -11.64338 -11.47225 -11.07049 -10.99759 -10.87147 -10.74568 -10.50685 -9.39170 -9.05773 -8.15214 -6.24089 0.14046 0.26275 1.41231 1.44015 1.51636 1.98234 2.16170 2.43681 2.64159 3.18003 3.21727 3.45628 3.87194 3.88891 4.21305 4.24946 4.29344 4.34347 4.37483 4.38709 4.40853 4.44277 4.48248 4.64084 4.70703 4.73415 4.77816 4.84028 4.87774 4.92309 5.05915 5.26266 5.30435 5.39550 5.40492 5.48910 5.57669 5.82439 5.83412 5.91938 6.10014 6.33034 6.34792 6.46798 6.67490 6.91567 7.43779 8.96605 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.002661 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.711793 B =10520.584070 C =10722.330027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.314 6.314 3 C 0.339 3.661 4 C -0.225 4.225 5 C 0.011 3.989 6 C -0.194 4.194 7 C 0.118 3.882 8 N -0.683 5.683 9 C 0.077 3.923 10 C -0.075 4.075 11 H 0.056 0.944 12 C -0.125 4.125 13 C 0.034 3.966 14 C -0.529 4.529 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.960 3.040 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.268 1.268 22 C 0.349 3.651 23 O -0.316 6.316 24 C 0.038 3.962 25 N -0.601 5.601 26 H 0.124 0.876 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.165 0.835 30 H 0.174 0.826 31 H 0.092 0.908 32 H 0.035 0.965 33 H 0.339 0.661 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.059 0.941 39 H -0.011 1.011 40 H -0.010 1.010 41 H 0.262 0.738 42 H 0.116 0.884 43 H 0.059 0.941 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 -22.041 -10.608 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.221 6.221 3 C 0.161 3.839 4 C -0.246 4.246 5 C -0.014 4.014 6 C -0.198 4.198 7 C -0.011 4.011 8 N -0.315 5.315 9 C -0.052 4.052 10 C -0.094 4.094 11 H 0.075 0.925 12 C -0.182 4.182 13 C -0.004 4.004 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.785 3.215 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.193 1.193 22 C 0.171 3.829 23 O -0.223 6.223 24 C -0.056 4.056 25 N -0.340 5.340 26 H 0.142 0.858 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.183 0.817 30 H 0.192 0.808 31 H 0.110 0.890 32 H 0.053 0.947 33 H 0.158 0.842 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.681 -22.260 -10.465 27.673 hybrid contribution -0.229 1.323 0.348 1.387 sum -12.909 -20.937 -10.117 26.596 Atomic orbital electron populations 1.23042 0.75963 1.04713 1.02042 1.86255 1.24280 1.23949 1.87611 1.19724 0.89877 0.83465 0.90864 1.21209 0.91284 1.00501 1.11583 1.21474 1.01640 0.89070 0.89247 1.19786 0.90089 0.97730 1.12150 1.20551 1.00540 0.90387 0.89595 1.60667 1.26203 1.23752 1.20844 1.21860 0.98931 0.88109 0.96282 1.21010 0.96477 0.96695 0.95188 0.92510 1.21626 0.95534 1.00076 1.00975 1.18993 0.93782 0.92148 0.95459 1.21612 1.35217 1.05641 0.94263 0.92212 1.25940 0.95287 0.97042 1.01677 1.70095 1.38667 1.14497 1.34308 0.85575 0.78565 0.77460 0.79905 1.19317 1.20999 1.19279 1.19413 0.88681 0.83955 0.90886 1.86283 1.20843 1.27729 1.87444 1.23025 0.76237 1.04146 1.02224 1.66738 1.41879 0.98527 1.26900 0.85809 0.92821 0.92563 0.81702 0.80839 0.88998 0.94655 0.84210 0.91677 0.95988 0.93592 0.94101 0.92219 0.99233 0.99190 0.92954 0.86585 0.92193 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 113.37 1.18 1.68 16 2 O -0.31 -6.14 10.47 -89.92 -0.94 -7.08 16 3 C 0.34 7.45 7.48 84.76 0.63 8.08 16 4 C -0.23 -4.22 10.04 22.48 0.23 -3.99 16 5 C 0.01 0.20 9.80 22.42 0.22 0.42 16 6 C -0.19 -4.56 5.42 -19.66 -0.11 -4.66 16 7 C 0.12 2.96 5.50 85.56 0.47 3.44 16 8 N -0.68 -20.45 6.49 -517.93 -3.36 -23.81 16 9 C 0.08 2.72 5.14 86.30 0.44 3.16 16 10 C -0.07 -3.13 2.55 -10.79 -0.03 -3.16 16 11 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 12 C -0.12 -4.74 8.77 71.98 0.63 -4.11 16 13 C 0.03 1.80 4.45 29.85 0.13 1.93 16 14 C -0.53 -30.28 8.41 25.60 0.22 -30.06 16 15 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 17 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 18 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.35 8.67 7.46 84.74 0.63 9.31 16 23 O -0.32 -7.65 9.70 -89.99 -0.87 -8.53 16 24 C 0.04 0.67 10.38 113.37 1.18 1.84 16 25 N -0.60 -14.22 8.06 -421.97 -3.40 -17.62 16 26 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 28 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 29 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.09 2.06 8.03 -2.39 -0.02 2.04 16 32 H 0.04 0.92 7.85 -2.39 -0.02 0.91 16 33 H 0.34 10.26 6.96 -89.69 -0.62 9.64 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.04 1.87 6.95 -2.39 -0.02 1.86 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.91 6.68 -2.38 -0.02 1.90 16 39 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.06 0.97 8.10 -2.39 -0.02 0.96 16 44 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 Total: -1.00 -68.32 365.62 0.38 -67.95 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.36 Total: 15.25 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 6.29 Total: -15.79 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -6.48 Total: -98.71 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -1.81 Total: -15.60 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.32 0.38 -67.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.661 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds