Wall clock time and date at job start Tue Mar 31 2020 07:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 117.00183 * 2 1 4 4 C 1.38800 * 119.65229 * 179.97438 * 3 2 1 5 5 C 1.38536 * 119.23614 * 179.97438 * 4 3 2 6 6 C 1.38580 * 118.54846 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.37918 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47318 * 259.99949 * 7 6 5 9 9 C 1.46910 * 111.00178 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47127 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47103 * 304.99844 * 10 9 8 12 12 C 1.52997 * 109.47482 * 65.00091 * 10 9 8 13 13 C 1.52999 * 109.46961 * 185.00452 * 10 9 8 14 14 C 1.50704 * 109.47137 * 175.00116 * 13 10 9 15 15 H 1.07991 * 120.00119 * 359.97438 * 14 13 10 16 16 C 1.37875 * 119.99876 * 179.97438 * 14 13 10 17 17 N 1.31519 * 120.00278 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00180 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47044 * 89.99576 * 18 16 14 20 20 H 1.48491 * 109.47429 * 209.99668 * 18 16 14 21 21 H 1.48497 * 109.46794 * 330.00036 * 18 16 14 22 22 C 1.38753 * 119.23675 * 0.25252 * 6 5 4 23 23 O 1.35676 * 119.64910 * 179.72315 * 22 6 5 24 24 C 1.42901 * 117.00349 * 179.97438 * 23 22 6 25 25 N 1.32324 * 119.64573 * 359.96974 * 3 2 1 26 26 H 1.09000 * 109.46347 * 60.00137 * 1 2 3 27 27 H 1.08995 * 109.47214 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47206 * 300.00810 * 1 2 3 29 29 H 1.07998 * 120.37653 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.72304 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47095 * 139.99709 * 7 6 5 32 32 H 1.09006 * 109.47400 * 20.00349 * 7 6 5 33 33 H 1.00899 * 111.00038 * 56.05120 * 8 7 6 34 34 H 1.08996 * 109.46545 * 59.99934 * 9 8 7 35 35 H 1.09001 * 109.46699 * 300.00610 * 9 8 7 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 10 9 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 10 9 38 38 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 39 39 H 1.09006 * 109.47194 * 294.99813 * 13 10 9 40 40 H 1.08997 * 109.47756 * 54.99294 * 13 10 9 41 41 H 0.96996 * 120.00275 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.46917 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47334 * 300.00381 * 24 23 22 44 44 H 1.08998 * 109.46957 * 60.00355 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4315 1.2730 0.0005 5 6 4.0515 2.5119 0.0000 6 6 3.2593 3.6489 -0.0005 7 6 3.8904 5.0174 -0.0006 8 7 3.8765 5.5631 1.3632 9 6 4.4847 6.8998 1.4017 10 6 4.4525 7.4337 2.8351 11 1 3.4287 7.4111 3.2083 12 6 5.3390 6.5599 3.7248 13 6 4.9710 8.8730 2.8549 14 6 4.8249 9.4404 4.2434 15 1 4.4041 8.8352 5.0326 16 6 5.2287 10.7323 4.5061 17 7 5.7417 11.4693 3.5452 18 14 5.0470 11.4360 6.2270 19 1 6.2784 11.1563 7.0087 20 1 4.8373 12.9035 6.1421 21 1 3.8812 10.8073 6.8983 22 6 1.8785 3.5129 0.0048 23 8 1.0949 4.6205 0.0101 24 6 -0.3192 4.4148 0.0149 25 7 1.3175 2.3141 -0.0006 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0202 0.3676 0.0014 30 1 5.1287 2.5898 0.0008 31 1 3.3279 5.6769 -0.6615 32 1 4.9196 4.9430 -0.3517 33 1 4.3364 4.9376 2.0077 34 1 3.9259 7.5720 0.7506 35 1 5.5180 6.8387 1.0601 36 1 6.3629 6.5825 3.3516 37 1 4.9696 5.5345 3.7106 38 1 5.3165 6.9406 4.7460 39 1 6.0221 8.8847 2.5664 40 1 4.3950 9.4764 2.1534 41 1 6.0260 12.3780 3.7301 42 1 -0.8266 5.3795 0.0183 43 1 -0.6081 3.8559 -0.8751 44 1 -0.6015 3.8522 0.9048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602667588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:05 Heat of formation + Delta-G solvation = -51.002413 kcal Electronic energy + Delta-G solvation = -23322.625728 eV Core-core repulsion = 19854.520747 eV Total energy + Delta-G solvation = -3468.104981 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10244 -39.07027 -37.49498 -36.73764 -34.29945 -32.57525 -31.79713 -30.48865 -28.05979 -27.32239 -26.72328 -25.76000 -24.31432 -23.13436 -22.32508 -21.66558 -19.06410 -18.92578 -18.08040 -16.56509 -16.48870 -16.23558 -15.74132 -15.67227 -15.17032 -14.68847 -14.64447 -14.15058 -13.93678 -13.65472 -13.47993 -13.27618 -13.13546 -12.34995 -12.25762 -12.19626 -11.95479 -11.72458 -11.67666 -11.39179 -11.29527 -10.83528 -10.81669 -10.72990 -10.29839 -10.17739 -10.04572 -9.91760 -9.65883 -9.11319 -8.92596 -8.29434 -8.24398 -8.00304 -5.94231 -3.95057 1.03250 1.10587 2.78570 3.02767 3.35186 3.41471 3.45188 3.54394 4.06106 4.48895 4.59210 4.73090 4.85969 4.94484 5.00723 5.05681 5.15568 5.17076 5.20557 5.31191 5.41506 5.42375 5.50301 5.68542 5.81675 5.85330 5.91863 6.09475 6.13775 6.19474 6.31749 6.52661 6.62513 6.68976 6.99980 7.15630 7.22696 7.23832 7.43852 7.58812 7.72786 7.75596 7.91442 8.06627 8.50722 9.11424 9.68082 11.17319 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.002681 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.182830 B =10442.948130 C =10690.009397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.354 3.646 4 C -0.230 4.230 5 C -0.006 4.006 6 C -0.186 4.186 7 C 0.116 3.884 8 N -0.682 5.682 9 C 0.066 3.934 10 C -0.084 4.084 11 H 0.065 0.935 12 C -0.134 4.134 13 C 0.028 3.972 14 C -0.511 4.511 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.382 3.618 23 O -0.283 6.283 24 C 0.040 3.960 25 N -0.598 5.598 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.336 0.664 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.040 0.960 37 H 0.031 0.969 38 H 0.061 0.939 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 -22.178 -10.244 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.176 3.824 4 C -0.251 4.251 5 C -0.032 4.032 6 C -0.189 4.189 7 C -0.013 4.013 8 N -0.314 5.314 9 C -0.062 4.062 10 C -0.102 4.102 11 H 0.083 0.917 12 C -0.191 4.191 13 C -0.010 4.010 14 C -0.550 4.550 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.203 3.797 23 O -0.188 6.188 24 C -0.055 4.055 25 N -0.337 5.337 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.823 -21.790 -10.338 26.042 hybrid contribution 1.185 0.243 0.842 1.474 sum -8.638 -21.547 -9.496 25.081 Atomic orbital electron populations 1.22839 0.77313 1.02872 1.02423 1.86250 1.22878 1.24547 1.87750 1.19374 0.89080 0.83335 0.90567 1.20829 0.91552 0.99476 1.13273 1.21173 1.00285 0.90032 0.91663 1.19745 0.90555 0.97197 1.11447 1.20547 0.97684 0.90700 0.92405 1.60580 1.60408 1.04595 1.05793 1.22134 0.95890 0.88769 0.99452 1.21209 0.99709 0.97727 0.91599 0.91675 1.21738 0.98729 0.97219 1.01405 1.19112 0.96061 0.88794 0.96998 1.21246 1.40395 0.97721 0.95604 0.92599 1.25021 0.95541 0.97233 0.96795 1.69966 1.42699 1.09133 1.31926 0.86637 0.78401 0.78196 0.85027 1.20789 1.21326 1.19903 1.19165 0.88342 0.83479 0.88675 1.86422 1.19030 1.26794 1.86589 1.22855 0.77931 1.02921 1.01820 1.66821 1.41561 0.98528 1.26787 0.92414 0.88655 0.92302 0.84046 0.83586 0.89975 0.94684 0.84546 0.91383 0.95892 0.94050 0.95010 0.91950 0.96774 0.96637 0.93138 0.88420 0.92794 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.26 10.47 -18.72 -0.20 -3.45 16 3 C 0.35 4.16 7.49 -17.13 -0.13 4.03 16 4 C -0.23 -2.36 10.04 -39.26 -0.39 -2.75 16 5 C -0.01 -0.06 9.80 -39.35 -0.39 -0.45 16 6 C -0.19 -2.30 5.42 -104.31 -0.57 -2.86 16 7 C 0.12 1.51 5.49 -4.98 -0.03 1.49 16 8 N -0.68 -10.44 6.49 -115.06 -0.75 -11.18 16 9 C 0.07 1.16 5.14 -3.82 -0.02 1.14 16 10 C -0.08 -1.74 2.54 -90.63 -0.23 -1.97 16 11 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 12 C -0.13 -2.53 8.78 37.16 0.33 -2.20 16 13 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 14 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 15 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.38 5.11 7.46 -17.14 -0.13 4.98 16 23 O -0.28 -3.85 9.72 -18.73 -0.18 -4.03 16 24 C 0.04 0.41 10.38 101.05 1.05 1.45 16 25 N -0.60 -7.52 8.06 -13.40 -0.11 -7.63 16 26 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 32 H 0.04 0.41 8.03 -51.93 -0.42 -0.01 16 33 H 0.34 4.92 6.98 -39.29 -0.27 4.65 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 38 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -31.97 365.66 -7.20 -39.17 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.22 Total: -0.35 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 0.03 Total: -8.44 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.12 Total: -45.27 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.38 Total: -7.49 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.97 -7.20 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.834 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds