Wall clock time and date at job start Tue Mar 31 2020 07:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 117.00183 * 2 1 4 4 C 1.38800 * 119.65229 * 179.97438 * 3 2 1 5 5 C 1.38536 * 119.23614 * 179.97438 * 4 3 2 6 6 C 1.38580 * 118.54846 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.37918 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47318 * 259.99949 * 7 6 5 9 9 C 1.46910 * 111.00178 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47127 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47103 * 304.99844 * 10 9 8 12 12 C 1.52997 * 109.47482 * 65.00091 * 10 9 8 13 13 C 1.52999 * 109.46961 * 185.00452 * 10 9 8 14 14 C 1.50704 * 109.47137 * 175.00116 * 13 10 9 15 15 H 1.07991 * 120.00119 * 359.97438 * 14 13 10 16 16 C 1.37875 * 119.99876 * 179.97438 * 14 13 10 17 17 N 1.31519 * 120.00278 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00180 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47044 * 89.99576 * 18 16 14 20 20 H 1.48491 * 109.47429 * 209.99668 * 18 16 14 21 21 H 1.48497 * 109.46794 * 330.00036 * 18 16 14 22 22 C 1.38753 * 119.23675 * 0.25252 * 6 5 4 23 23 O 1.35676 * 119.64910 * 179.72315 * 22 6 5 24 24 C 1.42901 * 117.00349 * 179.97438 * 23 22 6 25 25 N 1.32324 * 119.64573 * 359.96974 * 3 2 1 26 26 H 1.09000 * 109.46347 * 60.00137 * 1 2 3 27 27 H 1.08995 * 109.47214 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47206 * 300.00810 * 1 2 3 29 29 H 1.07998 * 120.37653 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.72304 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47095 * 139.99709 * 7 6 5 32 32 H 1.09006 * 109.47400 * 20.00349 * 7 6 5 33 33 H 1.00899 * 111.00038 * 56.05120 * 8 7 6 34 34 H 1.08996 * 109.46545 * 59.99934 * 9 8 7 35 35 H 1.09001 * 109.46699 * 300.00610 * 9 8 7 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 10 9 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 10 9 38 38 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 39 39 H 1.09006 * 109.47194 * 294.99813 * 13 10 9 40 40 H 1.08997 * 109.47756 * 54.99294 * 13 10 9 41 41 H 0.96996 * 120.00275 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.46917 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47334 * 300.00381 * 24 23 22 44 44 H 1.08998 * 109.46957 * 60.00355 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4315 1.2730 0.0005 5 6 4.0515 2.5119 0.0000 6 6 3.2593 3.6489 -0.0005 7 6 3.8904 5.0174 -0.0006 8 7 3.8765 5.5631 1.3632 9 6 4.4847 6.8998 1.4017 10 6 4.4525 7.4337 2.8351 11 1 3.4287 7.4111 3.2083 12 6 5.3390 6.5599 3.7248 13 6 4.9710 8.8730 2.8549 14 6 4.8249 9.4404 4.2434 15 1 4.4041 8.8352 5.0326 16 6 5.2287 10.7323 4.5061 17 7 5.7417 11.4693 3.5452 18 14 5.0470 11.4360 6.2270 19 1 6.2784 11.1563 7.0087 20 1 4.8373 12.9035 6.1421 21 1 3.8812 10.8073 6.8983 22 6 1.8785 3.5129 0.0048 23 8 1.0949 4.6205 0.0101 24 6 -0.3192 4.4148 0.0149 25 7 1.3175 2.3141 -0.0006 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0202 0.3676 0.0014 30 1 5.1287 2.5898 0.0008 31 1 3.3279 5.6769 -0.6615 32 1 4.9196 4.9430 -0.3517 33 1 4.3364 4.9376 2.0077 34 1 3.9259 7.5720 0.7506 35 1 5.5180 6.8387 1.0601 36 1 6.3629 6.5825 3.3516 37 1 4.9696 5.5345 3.7106 38 1 5.3165 6.9406 4.7460 39 1 6.0221 8.8847 2.5664 40 1 4.3950 9.4764 2.1534 41 1 6.0260 12.3780 3.7301 42 1 -0.8266 5.3795 0.0183 43 1 -0.6081 3.8559 -0.8751 44 1 -0.6015 3.8522 0.9048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:04 Heat of formation + Delta-G solvation = -74.567723 kcal Electronic energy + Delta-G solvation = -23323.647597 eV Core-core repulsion = 19854.520747 eV Total energy + Delta-G solvation = -3469.126849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95336 -39.89976 -38.59208 -37.96028 -35.81707 -34.23923 -33.00680 -31.56180 -28.97688 -28.74823 -27.98107 -26.95926 -25.72346 -24.03968 -23.88311 -22.72137 -20.64064 -19.87281 -18.93040 -18.52470 -17.36813 -17.28070 -16.86165 -16.60219 -16.47437 -15.94275 -15.85110 -15.56967 -14.90979 -14.86085 -14.50196 -14.40469 -14.21431 -14.01947 -13.72228 -13.29314 -13.14042 -12.88012 -12.81426 -12.72285 -12.57612 -12.49127 -12.34905 -12.17318 -11.89500 -11.61679 -11.46536 -11.04976 -11.00248 -10.87302 -10.73103 -10.51460 -9.27707 -9.06029 -8.15699 -6.24523 0.16057 0.27870 1.40810 1.41924 1.52981 2.02608 2.21954 2.43298 2.66194 3.17561 3.23966 3.45553 3.84425 3.97595 4.19797 4.26813 4.28902 4.36132 4.39011 4.40333 4.42196 4.45039 4.51185 4.60827 4.72074 4.73436 4.79198 4.85339 4.90366 4.98752 5.08689 5.24536 5.27478 5.40343 5.41544 5.51526 5.58294 5.83574 5.88430 5.92179 6.12697 6.34017 6.40091 6.57477 6.71382 6.91477 7.43446 8.96333 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.002681 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.182830 B =10442.948130 C =10690.009397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.314 6.314 3 C 0.339 3.661 4 C -0.227 4.227 5 C 0.003 3.997 6 C -0.200 4.200 7 C 0.122 3.878 8 N -0.686 5.686 9 C 0.080 3.920 10 C -0.075 4.075 11 H 0.051 0.949 12 C -0.125 4.125 13 C 0.033 3.967 14 C -0.528 4.528 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.960 3.040 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.362 3.638 23 O -0.307 6.307 24 C 0.039 3.961 25 N -0.606 5.606 26 H 0.055 0.945 27 H 0.124 0.876 28 H 0.052 0.948 29 H 0.166 0.834 30 H 0.177 0.823 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.342 0.658 34 H 0.055 0.945 35 H 0.029 0.971 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.043 0.957 39 H -0.008 1.008 40 H -0.014 1.014 41 H 0.262 0.738 42 H 0.112 0.888 43 H 0.060 0.940 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 -24.116 -9.640 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.221 6.221 3 C 0.161 3.839 4 C -0.247 4.247 5 C -0.021 4.021 6 C -0.203 4.203 7 C -0.007 4.007 8 N -0.318 5.318 9 C -0.049 4.049 10 C -0.094 4.094 11 H 0.069 0.931 12 C -0.183 4.183 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.785 3.215 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.189 1.189 22 C 0.183 3.817 23 O -0.213 6.213 24 C -0.056 4.056 25 N -0.346 5.346 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.071 0.929 29 H 0.184 0.816 30 H 0.194 0.806 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.162 0.838 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.010 0.990 40 H 0.004 0.996 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.079 0.921 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.568 -23.759 -9.737 27.401 hybrid contribution 1.050 0.767 0.598 1.431 sum -8.518 -22.992 -9.139 26.167 Atomic orbital electron populations 1.23033 0.76013 1.04681 1.02009 1.86249 1.24233 1.24021 1.87605 1.19769 0.89962 0.83440 0.90693 1.21173 0.91162 1.00502 1.11899 1.21510 1.01579 0.89094 0.89960 1.19792 0.90419 0.97389 1.12725 1.20485 0.98662 0.90902 0.90689 1.60468 1.60206 1.03586 1.07541 1.21810 0.96242 0.90000 0.96815 1.20999 0.98902 0.95175 0.94286 0.93060 1.21636 0.98589 0.98432 0.99594 1.19002 0.94335 0.91774 0.95331 1.21640 1.40131 0.98187 0.96641 0.92255 1.25945 0.95148 0.97733 1.01167 1.70100 1.43691 1.09558 1.34263 0.85517 0.78852 0.77339 0.79772 1.19776 1.20935 1.18935 1.19412 0.88897 0.83650 0.89697 1.86384 1.20378 1.27589 1.86900 1.22983 0.76770 1.03877 1.01970 1.66781 1.42037 0.98626 1.27153 0.92618 0.85770 0.92913 0.81645 0.80575 0.91250 0.92701 0.83818 0.92688 0.95280 0.93716 0.91725 0.93781 0.98951 0.99591 0.92961 0.86987 0.92143 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 113.37 1.18 1.70 16 2 O -0.31 -6.16 10.47 -89.90 -0.94 -7.10 16 3 C 0.34 7.47 7.49 84.75 0.63 8.10 16 4 C -0.23 -4.05 10.04 22.48 0.23 -3.83 16 5 C 0.00 0.06 9.80 22.42 0.22 0.28 16 6 C -0.20 -4.63 5.42 -19.66 -0.11 -4.74 16 7 C 0.12 3.00 5.49 85.56 0.47 3.47 16 8 N -0.69 -20.12 6.49 -517.93 -3.36 -23.48 16 9 C 0.08 2.80 5.14 86.30 0.44 3.25 16 10 C -0.07 -3.11 2.54 -10.80 -0.03 -3.14 16 11 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 12 C -0.13 -4.58 8.78 71.98 0.63 -3.95 16 13 C 0.03 1.77 4.45 29.85 0.13 1.90 16 14 C -0.53 -30.27 8.41 25.60 0.22 -30.05 16 15 H 0.06 3.29 7.06 -2.92 -0.02 3.27 16 16 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 17 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 18 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.36 9.48 7.46 84.74 0.63 10.11 16 23 O -0.31 -8.38 9.72 -89.93 -0.87 -9.25 16 24 C 0.04 0.79 10.38 113.37 1.18 1.96 16 25 N -0.61 -14.86 8.06 -421.96 -3.40 -18.26 16 26 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 27 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 29 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 30 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.07 1.89 7.87 -2.38 -0.02 1.87 16 32 H 0.05 1.15 8.03 -2.38 -0.02 1.13 16 33 H 0.34 9.24 6.98 -89.69 -0.63 8.61 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.93 6.68 -2.39 -0.02 1.92 16 38 H 0.04 1.76 6.95 -2.38 -0.02 1.74 16 39 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 40 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 44 H 0.05 1.10 8.11 -2.39 -0.02 1.08 16 Total: -1.00 -69.71 365.66 0.37 -69.34 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.35 Total: 13.77 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 6.29 Total: -14.63 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -6.48 Total: -99.14 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -1.82 Total: -16.36 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -69.71 0.37 -69.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.226 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds